Home
last modified time | relevance | path

Searched refs:S_cons (Results 1 – 12 of 12) sorted by relevance

/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/
H A Dgquad.h557 if (S_cons[k] == 3) { in backtrack_GQuad_IntLoop_comparative()
592 if (S_cons[k] != 3) in backtrack_GQuad_IntLoop_comparative()
622 if (S_cons[l] == 3) in backtrack_GQuad_IntLoop_comparative()
805 if (S_cons[k] != 3) in backtrack_GQuad_IntLoop_L_comparative()
842 if (S_cons[k] == 3) { in backtrack_GQuad_IntLoop_L_comparative()
871 if (S_cons[l] == 3) { in backtrack_GQuad_IntLoop_L_comparative()
1090 if (S_cons[p] == 3) { in E_GQuad_IntLoop_comparative()
1124 if (S_cons[p] != 3) in E_GQuad_IntLoop_comparative()
1153 if (S_cons[q] == 3) in E_GQuad_IntLoop_comparative()
1276 if (S_cons[q] == 3) in E_GQuad_IntLoop_L_comparative()
[all …]
H A Dgquad.c336 short *S_cons,
582 short *S_cons, in get_gquad_pf_matrix_comparative() argument
596 gg = get_g_islands(S_cons); in get_gquad_pf_matrix_comparative()
621 short *S_cons, in get_gquad_ali_matrix() argument
633 gg = get_g_islands(S_cons); in get_gquad_ali_matrix()
682 vc->S_cons, in vrna_gquad_mx_local_update()
771 short *S_cons, in create_aliL_matrix() argument
782 gg = get_g_islands_sub(S_cons, p, q); in create_aliL_matrix()
921 short *S_cons, in get_gquad_pattern_mfe_ali() argument
932 gg = get_g_islands_sub(S_cons, i, j); in get_gquad_pattern_mfe_ali()
[all …]
H A Dfold_compound.h273 short *S_cons; /**< @brief Numerical encoding of the consensus sequence member
H A Dcentroid.c158 S = (vc->type == VRNA_FC_TYPE_SINGLE) ? vc->sequence_encoding2 : vc->S_cons; in vrna_centroid()
H A Dfold_compound.c147 free(fc->S_cons); in vrna_fold_compound_free()
670 fc->S_cons = vrna_seq_encode_simple(fc->cons_seq, md_p); in set_fold_compound()
926 fc->S_cons = NULL; in nullify()
H A DMEA.c133 (fc->type == VRNA_FC_TYPE_SINGLE) ? fc->sequence_encoding : fc->S_cons, in vrna_MEA()
H A Dpart_func.c393 fc->S_cons, in fill_arrays()
H A Ddp_matrices.c549 vc->S_cons, in add_mfe_matrices()
/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/loops/
H A Dinternal_bt.c340 if (backtrack_GQuad_IntLoop_L_comparative(en, *i, *j, tt, fc->S_cons, fc->S5, fc->S3, in BT_int_loop()
350 if (backtrack_GQuad_IntLoop_comparative(en, *i, *j, tt, fc->S_cons, fc->S5, fc->S3, in BT_int_loop()
H A Dinternal.c782 fc->S_cons, in E_internal_loop()
793 fc->S_cons, in E_internal_loop()
H A Dinternal_pf.c537 fc->S_cons, in exp_E_int_loop()
/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/utils/
H A Dstructure_utils.c1578 S = (vc->type == VRNA_FC_TYPE_SINGLE) ? vc->sequence_encoding2 : vc->S_cons; in wrap_plist()