| /dports/biology/jalview/jalview/src/jalview/analysis/ |
| H A D | TreeModel.java | 53 SequenceNode top;
136 SequenceNode j; in associateLeavesToSequences()
296 public Vector<SequenceNode> findLeaves(SequenceNode nd) in findLeaves()
298 Vector<SequenceNode> leaves = new Vector<SequenceNode>(); in findLeaves()
313 Vector<SequenceNode> findLeaves(SequenceNode nd, in findLeaves()
392 List<SequenceNode> groups = new ArrayList<SequenceNode>(); in groupNodes()
531 SequenceNode l = (SequenceNode) nd.left(); in _reCount()
532 SequenceNode r = (SequenceNode) nd.right(); in _reCount()
558 SequenceNode tmp = (SequenceNode) nd.left(); in swapNodes()
572 void changeDirection(SequenceNode nd, SequenceNode dir) in changeDirection()
[all …]
|
| H A D | TreeBuilder.java | 29 import jalview.datamodel.SequenceNode;
64 SequenceNode maxdist;
66 SequenceNode top;
74 Vector<SequenceNode> node;
169 void reCount(SequenceNode nd) in reCount()
183 void _reCount(SequenceNode nd) in _reCount()
202 SequenceNode l = (SequenceNode) nd.left(); in _reCount()
203 SequenceNode r = (SequenceNode) nd.right(); in _reCount()
221 public SequenceNode getTopNode() in getTopNode()
415 SequenceNode sn = new SequenceNode(); in joinClusters()
[all …]
|
| H A D | AverageDistanceTree.java | 25 import jalview.datamodel.SequenceNode;
116 protected void findNewDistances(SequenceNode nodei, SequenceNode nodej, in findNewDistances()
122 SequenceNode sni = nodei; in findNewDistances()
123 SequenceNode snj = nodej; in findNewDistances()
128 sni = (SequenceNode) sni.left(); in findNewDistances()
134 snj = (SequenceNode) snj.left(); in findNewDistances()
|
| /dports/biology/jalview/jalview/src/jalview/io/ |
| H A D | NewickFile.java | 29 import jalview.datamodel.SequenceNode;
77 SequenceNode root;
272 root = new SequenceNode(); in parse()
274 SequenceNode realroot = null; in parse()
275 SequenceNode c = root; in parse()
325 c = (SequenceNode) c.right(); in parse()
332 SequenceNode tmpn = new SequenceNode(null, c, null, 0, 0, true); in parse()
339 c = (SequenceNode) c.left(); in parse()
528 SequenceNode newnode = new SequenceNode(null, c, nodename, in parse()
548 SequenceNode newdummy = new SequenceNode(null, c, null, in parse()
[all …]
|
| /dports/biology/jalview/jalview/src/jalview/datamodel/ |
| H A D | SequenceNode.java | 31 public class SequenceNode extends BinaryNode class
56 public SequenceNode() in SequenceNode() method in SequenceNode
73 public SequenceNode(Object val, SequenceNode parent, float dist, in SequenceNode() method in SequenceNode
96 public SequenceNode(Object val, SequenceNode parent, String name, in SequenceNode() method in SequenceNode
155 public SequenceNode AscendTree() in AscendTree()
157 SequenceNode c = this; in AscendTree()
161 c = (SequenceNode) c.parent(); in AscendTree()
|
| /dports/devel/llvm90/llvm-9.0.1.src/unittests/Support/ |
| H A D | YAMLParserTest.cpp | 192 yaml::SequenceNode *ParsedSequence in ExpectCanParseString()
193 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in ExpectCanParseString()
229 yaml::SequenceNode *Array in TEST()
230 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in TEST()
266 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
281 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
297 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
299 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
318 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
320 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
|
| /dports/devel/llvm80/llvm-8.0.1.src/unittests/Support/ |
| H A D | YAMLParserTest.cpp | 193 yaml::SequenceNode *ParsedSequence in ExpectCanParseString()
194 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in ExpectCanParseString()
230 yaml::SequenceNode *Array in TEST()
231 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in TEST()
267 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
282 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
298 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
300 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
319 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
321 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
|
| /dports/devel/llvm70/llvm-7.0.1.src/unittests/Support/ |
| H A D | YAMLParserTest.cpp | 193 yaml::SequenceNode *ParsedSequence in ExpectCanParseString()
194 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in ExpectCanParseString()
230 yaml::SequenceNode *Array in TEST()
231 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in TEST()
267 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
282 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
298 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
300 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
319 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
321 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
|
| /dports/devel/llvm-cheri/llvm-project-37c49ff00e3eadce5d8703fdc4497f28458c64a8/llvm/unittests/Support/ |
| H A D | YAMLParserTest.cpp | 192 yaml::SequenceNode *ParsedSequence in ExpectCanParseString()
193 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in ExpectCanParseString()
229 yaml::SequenceNode *Array in TEST()
230 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in TEST()
266 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
281 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
297 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
299 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
318 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
320 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
|
| /dports/devel/llvm11/llvm-11.0.1.src/unittests/Support/ |
| H A D | YAMLParserTest.cpp | 192 yaml::SequenceNode *ParsedSequence in ExpectCanParseString()
193 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in ExpectCanParseString()
229 yaml::SequenceNode *Array in TEST()
230 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in TEST()
266 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
281 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
297 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
299 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
318 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
320 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
|
| /dports/devel/llvm-devel/llvm-project-f05c95f10fc1d8171071735af8ad3a9e87633120/llvm/unittests/Support/ |
| H A D | YAMLParserTest.cpp | 192 yaml::SequenceNode *ParsedSequence in ExpectCanParseString()
193 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in ExpectCanParseString()
229 yaml::SequenceNode *Array in TEST()
230 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in TEST()
266 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
281 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
297 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
299 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
318 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
320 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
|
| /dports/devel/llvm12/llvm-project-12.0.1.src/llvm/unittests/Support/ |
| H A D | YAMLParserTest.cpp | 192 yaml::SequenceNode *ParsedSequence in ExpectCanParseString()
193 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in ExpectCanParseString()
229 yaml::SequenceNode *Array in TEST()
230 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in TEST()
266 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
281 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
297 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
299 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
318 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
320 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
|
| /dports/devel/llvm10/llvm-10.0.1.src/unittests/Support/ |
| H A D | YAMLParserTest.cpp | 192 yaml::SequenceNode *ParsedSequence in ExpectCanParseString()
193 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in ExpectCanParseString()
229 yaml::SequenceNode *Array in TEST()
230 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in TEST()
266 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
281 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
297 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
299 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
318 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
320 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
|
| /dports/lang/rust/rustc-1.58.1-src/src/llvm-project/llvm/unittests/Support/ |
| H A D | YAMLParserTest.cpp | 192 yaml::SequenceNode *ParsedSequence in ExpectCanParseString()
193 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in ExpectCanParseString()
229 yaml::SequenceNode *Array in TEST()
230 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in TEST()
266 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
281 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
297 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
299 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
318 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
320 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
|
| /dports/devel/wasi-compiler-rt12/llvm-project-12.0.1.src/llvm/unittests/Support/ |
| H A D | YAMLParserTest.cpp | 192 yaml::SequenceNode *ParsedSequence in ExpectCanParseString()
193 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in ExpectCanParseString()
229 yaml::SequenceNode *Array in TEST()
230 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in TEST()
266 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
281 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
297 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
299 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
318 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
320 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
|
| /dports/devel/wasi-compiler-rt13/llvm-project-13.0.1.src/llvm/unittests/Support/ |
| H A D | YAMLParserTest.cpp | 192 yaml::SequenceNode *ParsedSequence in ExpectCanParseString()
193 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in ExpectCanParseString()
229 yaml::SequenceNode *Array in TEST()
230 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in TEST()
266 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
281 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
297 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
299 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
318 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
320 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
|
| /dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/llvm/llvm/unittests/Support/ |
| H A D | YAMLParserTest.cpp | 192 yaml::SequenceNode *ParsedSequence in ExpectCanParseString()
193 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in ExpectCanParseString()
229 yaml::SequenceNode *Array in TEST()
230 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in TEST()
266 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
281 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
297 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
299 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
318 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
320 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
|
| /dports/devel/tinygo/tinygo-0.14.1/llvm-project/llvm/unittests/Support/ |
| H A D | YAMLParserTest.cpp | 192 yaml::SequenceNode *ParsedSequence in ExpectCanParseString()
193 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in ExpectCanParseString()
229 yaml::SequenceNode *Array in TEST()
230 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in TEST()
266 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
281 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
297 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
299 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
318 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
320 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
|
| /dports/devel/wasi-libcxx/llvm-project-13.0.1.src/llvm/unittests/Support/ |
| H A D | YAMLParserTest.cpp | 192 yaml::SequenceNode *ParsedSequence in ExpectCanParseString()
193 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in ExpectCanParseString()
229 yaml::SequenceNode *Array in TEST()
230 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in TEST()
266 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
281 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
297 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
299 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
318 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
320 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
|
| /dports/graphics/llvm-mesa/llvm-13.0.1.src/unittests/Support/ |
| H A D | YAMLParserTest.cpp | 192 yaml::SequenceNode *ParsedSequence in ExpectCanParseString()
193 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in ExpectCanParseString()
229 yaml::SequenceNode *Array in TEST()
230 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in TEST()
266 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
281 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
297 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
299 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
318 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
320 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
|
| /dports/devel/llvm13/llvm-project-13.0.1.src/llvm/unittests/Support/ |
| H A D | YAMLParserTest.cpp | 192 yaml::SequenceNode *ParsedSequence in TEST()
193 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in TEST()
229 yaml::SequenceNode *Array in TEST()
230 = dyn_cast<yaml::SequenceNode>(Stream.begin()->getRoot()); in TEST()
266 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
281 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
297 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
299 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
318 yaml::SequenceNode *Node = dyn_cast<yaml::SequenceNode>( in TEST()
320 yaml::SequenceNode *AnotherNode = dyn_cast<yaml::SequenceNode>( in TEST()
|
| /dports/biology/jalview/jalview/src/jalview/appletgui/ |
| H A D | TreeCanvas.java | 29 import jalview.datamodel.SequenceNode;
89 SequenceNode highlightNode;
131 SequenceNode lf = leaves.elementAt(i); in setTree()
341 SequenceNode top = tree.getTopNode(); in pickNodes()
413 setColor((SequenceNode) node.left(), c); in setColor()
414 setColor((SequenceNode) node.right(), c); in setColor()
472 SequenceNode top = tree.getTopNode(); in draw()
557 if (ob instanceof SequenceNode) in mouseMoved()
559 highlightNode = (SequenceNode) ob; in mouseMoved()
590 else if (!(ob instanceof SequenceNode)) in mousePressed()
[all …]
|
| /dports/biology/jalview/jalview/src/jalview/gui/ |
| H A D | TreeCanvas.java | 29 import jalview.datamodel.SequenceNode;
110 SequenceNode highlightNode;
181 SequenceNode lf = leaves.elementAt(i); in setTree()
423 SequenceNode top = tree.getTopNode(); in pickNodes()
525 setColor((SequenceNode) node.left(), c); in setColor()
526 setColor((SequenceNode) node.right(), c); in setColor()
721 SequenceNode top = tree.getTopNode(); in draw()
851 if (ob instanceof SequenceNode) in mouseMoved()
853 highlightNode = (SequenceNode) ob; in mouseMoved()
925 else if (!(ob instanceof SequenceNode)) in mousePressed()
[all …]
|
| /dports/security/py-angr/angr-9.0.5405/angr/analyses/decompiler/ |
| H A D | utils.py | 5 from .structurer_nodes import MultiNode, BaseNode, CodeNode, SequenceNode, ConditionNode, SwitchCas…
21 elif type(node) is SequenceNode:
46 if type(node) is SequenceNode:
69 if type(node) is SequenceNode:
162 if isinstance(parent, SequenceNode):
166 seq = SequenceNode(nodes=[parent.node, node])
173 parent.true_node = SequenceNode(nodes=[parent.true_node])
177 parent.false_node = SequenceNode(nodes=[parent.false_node])
192 seq = SequenceNode(nodes=new_nodes)
201 seq = SequenceNode(nodes=new_nodes)
|
| /dports/devel/py-types-PyYAML/types-PyYAML-6.0.1/yaml-stubs/ |
| H A D | representer.pyi | 8 …rt MappingNode as MappingNode, Node as Node, ScalarNode as ScalarNode, SequenceNode as SequenceNode
32 …quence(self, tag: str, sequence: Iterable[Any], flow_style: bool | None = ...) -> SequenceNode: ...
47 def represent_list(self, data: Iterable[Any]) -> SequenceNode: ...
57 def represent_tuple(self, data: Iterable[Any]) -> SequenceNode: ...
60 def represent_object(self, data) -> SequenceNode | MappingNode: ...
61 def represent_ordered_dict(self, data: Mapping[Any, Any]) -> SequenceNode: ...
|