/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/hgvs/ |
H A D | variation_ref_utils.cpp | 29 inst.SetDelta().clear(); in g_CreateSNV() 55 inst.SetDelta().clear(); in g_CreateMNP() 79 inst.SetDelta().clear(); in g_CreateMissense() 98 inst.SetDelta().clear(); in g_CreateDeletion() 127 inst.SetDelta().clear(); in g_CreateDuplication() 159 inst.SetDelta().clear(); in g_CreateIdentity() 194 inst.SetDelta().clear(); in g_CreateVarref() 224 inst.SetDelta().clear(); in g_CreateDelins() 252 inst.SetDelta().clear(); in g_CreateInsertion() 280 inst.SetDelta().clear(); in g_CreateInversion() [all …]
|
H A D | special_irep_to_seqfeat.cpp | 50 var_inst.SetDelta().push_back(delta_item); in g_CreateSpecialSeqfeat() 61 var_inst.SetDelta().push_back(delta_item); in g_CreateSpecialSeqfeat() 71 var_inst.SetDelta().push_back(delta_item); in g_CreateSpecialSeqfeat() 82 var_inst.SetDelta().push_back(delta_item); in g_CreateSpecialSeqfeat()
|
/dports/math/gecode/gecode-0916a1a/gecode/set/var-imp/ |
H A D | delta.hpp | 39 SetDelta::SetDelta(void) : _glbMin(1), _glbMax(0), _lubMin(1), _lubMax(0) {} in SetDelta() function in Gecode::Set::SetDelta 42 SetDelta::SetDelta(int glbMin, int glbMax, in SetDelta() function in Gecode::Set::SetDelta 48 SetDelta::glbMin(void) const { in glbMin() 52 SetDelta::glbMax(void) const { in glbMax() 56 SetDelta::lubMin(void) const { in lubMin() 60 SetDelta::lubMax(void) const { in lubMax() 64 SetDelta::glbAny(void) const { in glbAny() 68 SetDelta::lubAny(void) const { in lubAny()
|
H A D | set.hpp | 137 return static_cast<const SetDelta&>(d).glbMin(); in glbMin() 141 return static_cast<const SetDelta&>(d).glbMax(); in glbMax() 145 return static_cast<const SetDelta&>(d).glbAny(); in glbAny() 149 return static_cast<const SetDelta&>(d).lubMin(); in lubMin() 192 SetDelta d; in intersect() 224 SetDelta d(1, 0, lub.min(), lub.max()); in intersectI() 265 SetDelta d; in intersectI_full() 280 SetDelta d; in include() 339 SetDelta d; in includeI_full() 354 SetDelta d; in exclude() [all …]
|
H A D | set.cpp | 52 SetDelta d; in cardMin_full() 63 SetDelta d; in cardMax_full() 68 SetVarImp::processLubChange(Space& home, SetDelta& d) { in processLubChange() 90 SetVarImp::processGlbChange(Space& home, SetDelta& d) { in processGlbChange()
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seqfeat/ |
H A D | Variation_ref.cpp | 653 inst.SetDelta().clear(); in SetSNV() 673 inst.SetDelta().clear(); in SetMNP() 691 inst.SetDelta().clear(); in SetMissense() 705 inst.SetDelta().clear(); in SetDuplication() 729 inst.SetDelta().clear(); in SetIdentity() 945 inst.SetDelta().clear(); in SetSNV() 978 inst.SetDelta().clear(); in SetMNP() 998 inst.SetDelta().clear(); in SetDeletion() 1015 inst.SetDelta().clear(); in SetInsertion() 1088 inst.SetDelta().front() in SetMicrosatellite() [all …]
|
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seqfeat/ |
H A D | Variation_ref.cpp | 653 inst.SetDelta().clear(); in SetSNV() 673 inst.SetDelta().clear(); in SetMNP() 691 inst.SetDelta().clear(); in SetMissense() 705 inst.SetDelta().clear(); in SetDuplication() 729 inst.SetDelta().clear(); in SetIdentity() 945 inst.SetDelta().clear(); in SetSNV() 978 inst.SetDelta().clear(); in SetMNP() 998 inst.SetDelta().clear(); in SetDeletion() 1015 inst.SetDelta().clear(); in SetInsertion() 1088 inst.SetDelta().front() in SetMicrosatellite() [all …]
|
/dports/math/gecode/gecode-0916a1a/gecode/set/channel/ |
H A D | bool.hpp | 86 SetDelta d; in ChannelBool() 90 SetDelta d; in ChannelBool() 103 new (&delta) SetDelta(2,0,2,0); in ChannelBool() 197 new (&delta) SetDelta(); in propagate() 206 const SetDelta& d = static_cast<const SetDelta&>(_d); in advise() 217 SetDelta dummy; in advise() 221 SetDelta dummy; in advise() 230 SetDelta(2,0, delta.lubMin(), delta.lubMax()); in advise() 234 SetDelta(d.glbMin(), d.glbMax(), in advise() 257 SetDelta(delta.glbMin(), delta.glbMax(), 2,0); in advise() [all …]
|
/dports/math/gecode/gecode-0916a1a/gecode/set/ |
H A D | var-imp.hpp | 52 class SetDelta : public Delta { class 63 SetDelta(void); 65 SetDelta(int glbMin, int glbMax, int lubMin, int lubMax); 208 GECODE_SET_EXPORT bool include_full(Space& home,int,int,SetDelta&); 227 bool include(Space& home,int i,int j,SetDelta& d); 245 GECODE_SET_EXPORT bool exclude_full(Space& home, int, int, SetDelta&); 265 bool exclude(Space& home, int i, int j, SetDelta& d); 533 GECODE_SET_EXPORT ModEvent processLubChange(Space& home, SetDelta& d); 534 GECODE_SET_EXPORT ModEvent processGlbChange(Space& home, SetDelta& d);
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/ |
H A D | gaps_edit.cpp | 146 CDelta_ext& ext = inst.SetExt().SetDelta(); in MakeGap() 195 CDelta_ext& ext = inst.SetExt().SetDelta(); in MakeGap() 303 CDelta_ext& ext = inst.SetExt().SetDelta(); in ConvertNs2Gaps() 334 CDelta_ext& dst_data = inst.SetExt().SetDelta(); in ConvertNs2Gaps() 429 CDelta_ext& delta_ext = bioseq.SetInst().SetExt().SetDelta(); in ConvertBioseqToDelta() 446 bioseq.SetInst().SetExt().SetDelta().Set().push_back(delta_seq); in AppendGap() 452 auto& delta_set = parent.SetInst().SetExt().SetDelta().Set(); in AddBioseqAsLiteral() 459 delta_set.splice(delta_set.end(), bioseq.SetInst().SetExt().SetDelta().Set()); in AddBioseqAsLiteral()
|
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/ |
H A D | gaps_edit.cpp | 146 CDelta_ext& ext = inst.SetExt().SetDelta(); in MakeGap() 195 CDelta_ext& ext = inst.SetExt().SetDelta(); in MakeGap() 303 CDelta_ext& ext = inst.SetExt().SetDelta(); in ConvertNs2Gaps() 334 CDelta_ext& dst_data = inst.SetExt().SetDelta(); in ConvertNs2Gaps() 429 CDelta_ext& delta_ext = bioseq.SetInst().SetExt().SetDelta(); in ConvertBioseqToDelta() 446 bioseq.SetInst().SetExt().SetDelta().Set().push_back(delta_seq); in AppendGap() 452 auto& delta_set = parent.SetInst().SetExt().SetDelta().Set(); in AddBioseqAsLiteral() 459 delta_set.splice(delta_set.end(), bioseq.SetInst().SetExt().SetDelta().Set()); in AddBioseqAsLiteral()
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/variation/test/shift/ |
H A D | test-shift.cpp | 265 …var2)->SetData().SetInstance().IsSetDelta() && !(*var2)->SetData().SetInstance().SetDelta().empty() in GetAlleles() 266 …&& (*var2)->SetData().SetInstance().SetDelta().front()->IsSetSeq() && (*var2)->SetData().SetInstan… in GetAlleles() 267 … && (*var2)->SetData().SetInstance().SetDelta().front()->SetSeq().SetLiteral().IsSetSeq_data() in GetAlleles() 268 …&& (*var2)->SetData().SetInstance().SetDelta().front()->SetSeq().SetLiteral().SetSeq_data().IsIupa… in GetAlleles() 270 …string a = (*var2)->SetData().SetInstance().SetDelta().front()->SetSeq().SetLiteral().SetSeq_data(… in GetAlleles()
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/unit_test/ |
H A D | unit_test_gap_trim.cpp | 263 …nuc->SetSeq().SetInst().SetExt().SetDelta().AddLiteral("ATGATGATGCCC", objects::CSeq_inst::eMol_dn… in TryOneCDSCase() 267 nuc->SetSeq().SetInst().SetExt().SetDelta().Set().push_back(gap_seg); in TryOneCDSCase() 268 …nuc->SetSeq().SetInst().SetExt().SetDelta().AddLiteral("CCCAAATTTTAA", objects::CSeq_inst::eMol_dn… in TryOneCDSCase() 362 seq.SetInst().SetExt().SetDelta().AddLiteral(nuc_before, objects::CSeq_inst::eMol_dna); in SetUpDelta() 366 seq.SetInst().SetExt().SetDelta().Set().push_back(gap_seg); in SetUpDelta() 577 nuc->SetSeq().SetInst().SetExt().SetDelta().Set().push_back(gap_seg); in BOOST_AUTO_TEST_CASE() 629 nuc->SetSeq().SetInst().SetExt().SetDelta().Set().push_back(gap_seg); in BOOST_AUTO_TEST_CASE() 674 seq.SetInst().SetExt().SetDelta().Set().push_back(gap_seg1); in AddNsToGoodDelta() 675 …seq.SetInst().SetExt().SetDelta().AddLiteral("NNNCCCATGNNNATGATGNNN", objects::CSeq_inst::eMol_dna… in AddNsToGoodDelta() 680 seq.SetInst().SetExt().SetDelta().Set().push_back(gap_seg2); in AddNsToGoodDelta() [all …]
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/misc/hgvs/ |
H A D | hgvs_parser.cpp | 946 var_inst.SetDelta().push_back(di_del); in x_delins() 949 var_inst.SetDelta().push_back(di_ins); in x_delins() 967 var_inst.SetDelta().push_back(di); in x_deletion() 978 var_inst.SetDelta(); in x_deletion() 1031 var_inst.SetDelta().push_back(delta); in x_duplication() 1079 var_inst.SetDelta().push_back(delta); in x_nuc_subst() 1101 var_inst.SetDelta().push_back(delta); in x_nuc_inv() 1206 var_inst.SetDelta().push_back(delta); in x_translocation() 1230 var_inst.SetDelta().push_back(delta); in x_conversion() 1343 var_inst.SetDelta().push_back(delta); in x_prot_missense() [all …]
|
H A D | variation_util.cpp | 286 v.SetData().SetInstance().SetDelta().pop_front(); in s_ResolveIntronicOffsets() 300 v.SetData().SetInstance().SetDelta().pop_front(); in s_ResolveIntronicOffsets() 315 v.SetData().SetInstance().SetDelta().pop_back(); in s_ResolveIntronicOffsets() 388 v.SetData().SetInstance().SetDelta().push_back(delta); in s_AddIntronicOffsets() 390 v.SetData().SetInstance().SetDelta().push_front(delta); in s_AddIntronicOffsets() 406 v.SetData().SetInstance().SetDelta().push_back(delta); in s_AddIntronicOffsets() 765 inst2.SetDelta().push_back(delta2); in x_ProtToPrecursor() 854 inst.SetDelta().push_back(di); in ChangeToDelins() 858 CDelta_item& di = *inst.SetDelta().front(); in ChangeToDelins() 946 CDelta_item& delta = *inst.SetDelta().front(); in AdjustDelinsToInterval() [all …]
|
H A D | hgvs_parser2.cpp | 1304 del_vr->SetData().SetInstance().SetDelta() = ins_vr->SetData().SetInstance().SetDelta(); in x_delins() 1331 var_inst.SetDelta().push_back(di); in x_deletion() 1348 var_inst.SetDelta(); in x_deletion() 1394 var_inst.SetDelta().push_back(delta); in x_duplication() 1453 var_inst.SetDelta().push_back(delta); in x_no_change() 1479 var_inst.SetDelta().push_back(delta); in x_nuc_subst() 1505 var_inst.SetDelta().push_back(delta); in x_nuc_inv() 1508 var_inst.SetDelta(); in x_nuc_inv() 1628 var_inst.SetDelta(); //no delta contents in x_translocation() 1649 var_inst.SetDelta().push_back(delta); in x_conversion() [all …]
|
/dports/cad/opencascade/opencascade-7.6.0/src/TDataStd/ |
H A D | TDataStd_IntPackedMap.cxx | 55 anAtt->SetDelta(isDelta); in Handle() 200 anInto->SetDelta(myIsDelta); in Paste()
|
H A D | TDataStd_ByteArray.cxx | 63 A->SetDelta(isDelta); in SetAttr() 281 anAtt->SetDelta(myIsDelta); in Paste()
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/ngalign/ |
H A D | unordered_spliter.cpp | 223 CurrBioseq->SetInst().SetExt().SetDelta().Set(); in x_SplitDeltaExt() 273 CurrBioseq->SetInst().SetExt().SetDelta().Set(); in x_SplitDeltaExt() 311 CurrBioseq->SetInst().SetExt().SetDelta().Set().push_back(InsertSeq); in x_SplitDeltaExt() 412 CurrBioseq->SetInst().SetExt().SetDelta().Set(); in x_SplitSeqData() 414 CurrBioseq->SetInst().SetExt().SetDelta().Set().push_back(DeltaSeq); in x_SplitSeqData() 460 CurrBioseq->SetInst().SetExt().SetDelta().Set(); in x_SplitSeqData() 462 CurrBioseq->SetInst().SetExt().SetDelta().Set().push_back(DeltaSeq); in x_SplitSeqData()
|
/dports/graphics/dcp2icc/dcp2icc-0.1/dng_sdk_1_2/dng_sdk/source/ |
H A D | dng_hue_sat_map.cpp | 166 void dng_hue_sat_map::SetDelta (uint32 hueDiv, in SetDelta() function in dng_hue_sat_map 231 SetDelta (hueDiv, 0, valDiv, zeroSatModify); in SetDelta()
|
/dports/graphics/sharpconstruct/sharpconstruct-0.11/include/ |
H A D | GrabBrush.hh | 43 static void SetDelta( float x, float y );
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/variation/ |
H A D | variation_utils.cpp | 200 NON_CONST_ITERATE(CVariation_inst::TDelta, delta_it, inst.SetDelta()) { in CorrectRefAllele() 311 NON_CONST_ITERATE(CVariation_inst::TDelta, delta_it, inst.SetDelta()) in x_SetReference() 363 NON_CONST_ITERATE(CVariation_inst::TDelta, delta_it, inst.SetDelta()) in x_FixAlleles() 404 inst->SetDelta().push_back(item); in x_FixAlleles() 480 NON_CONST_ITERATE(CVariation_inst::TDelta, delta_it, inst.SetDelta()) in x_FixAlleles() 521 inst->SetDelta().push_back(item); in x_FixAlleles() 1029 … inst.SetDelta().front()->SetSeq().SetLiteral().SetSeq_data().SetIupacna().Set(allele); in x_Shift() 1086 NON_CONST_ITERATE(CVariation_inst::TDelta, delta_it, inst.SetDelta()) in x_Shift() 1252 … inst.SetDelta().front()->SetSeq().SetLiteral().SetSeq_data().SetIupacna().Set(allele); in x_Shift() 1309 NON_CONST_ITERATE(CVariation_inst::TDelta, delta_it, inst.SetDelta()) in x_Shift() [all …]
|
/dports/devel/awless/awless-0.1.11/vendor/gopkg.in/src-d/go-git.v4/plumbing/format/packfile/ |
H A D | delta_selector.go | 133 otp.SetDelta(base, otp.Object) 246 target.SetDelta(base, delta)
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/ms/omssa/ |
H A D | msladder.hpp | 201 TDelta& SetDelta(void); 402 TDelta& CLadder::SetDelta(void) in SetDelta() function in CLadder
|
/dports/devel/upp/upp/uppsrc/Geom/Ctrl/ |
H A D | PlotterCtrl.cpp | 111 SetDelta(pos); in Layout() 217 SetDelta(d); in SetExtent() 250 SetDelta(new_pos); in ScrollInto() 266 void PlotterCtrl::SetDelta(Pointf d) in SetDelta() function in Upp::PlotterCtrl 290 SetDelta(mid - (mid - d) * (scale / s)); in SetZoom() 301 SetDelta(d); in SetZoom() 404 SetDelta(Sizef(GetSize() >> 1) - Sizef(center) * scale); in SetSc() 799 SetDelta(push_delta + Sizef(end - start)); in Drop() 1261 owner.SetDelta(owner.GetDelta() + (end - start) * owner.GetPushScale()); in Drop()
|