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Searched refs:SetDelta (Results 1 – 25 of 226) sorted by relevance

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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/hgvs/
H A Dvariation_ref_utils.cpp29 inst.SetDelta().clear(); in g_CreateSNV()
55 inst.SetDelta().clear(); in g_CreateMNP()
79 inst.SetDelta().clear(); in g_CreateMissense()
98 inst.SetDelta().clear(); in g_CreateDeletion()
127 inst.SetDelta().clear(); in g_CreateDuplication()
159 inst.SetDelta().clear(); in g_CreateIdentity()
194 inst.SetDelta().clear(); in g_CreateVarref()
224 inst.SetDelta().clear(); in g_CreateDelins()
252 inst.SetDelta().clear(); in g_CreateInsertion()
280 inst.SetDelta().clear(); in g_CreateInversion()
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H A Dspecial_irep_to_seqfeat.cpp50 var_inst.SetDelta().push_back(delta_item); in g_CreateSpecialSeqfeat()
61 var_inst.SetDelta().push_back(delta_item); in g_CreateSpecialSeqfeat()
71 var_inst.SetDelta().push_back(delta_item); in g_CreateSpecialSeqfeat()
82 var_inst.SetDelta().push_back(delta_item); in g_CreateSpecialSeqfeat()
/dports/math/gecode/gecode-0916a1a/gecode/set/var-imp/
H A Ddelta.hpp39 SetDelta::SetDelta(void) : _glbMin(1), _glbMax(0), _lubMin(1), _lubMax(0) {} in SetDelta() function in Gecode::Set::SetDelta
42 SetDelta::SetDelta(int glbMin, int glbMax, in SetDelta() function in Gecode::Set::SetDelta
48 SetDelta::glbMin(void) const { in glbMin()
52 SetDelta::glbMax(void) const { in glbMax()
56 SetDelta::lubMin(void) const { in lubMin()
60 SetDelta::lubMax(void) const { in lubMax()
64 SetDelta::glbAny(void) const { in glbAny()
68 SetDelta::lubAny(void) const { in lubAny()
H A Dset.hpp137 return static_cast<const SetDelta&>(d).glbMin(); in glbMin()
141 return static_cast<const SetDelta&>(d).glbMax(); in glbMax()
145 return static_cast<const SetDelta&>(d).glbAny(); in glbAny()
149 return static_cast<const SetDelta&>(d).lubMin(); in lubMin()
192 SetDelta d; in intersect()
224 SetDelta d(1, 0, lub.min(), lub.max()); in intersectI()
265 SetDelta d; in intersectI_full()
280 SetDelta d; in include()
339 SetDelta d; in includeI_full()
354 SetDelta d; in exclude()
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H A Dset.cpp52 SetDelta d; in cardMin_full()
63 SetDelta d; in cardMax_full()
68 SetVarImp::processLubChange(Space& home, SetDelta& d) { in processLubChange()
90 SetVarImp::processGlbChange(Space& home, SetDelta& d) { in processGlbChange()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seqfeat/
H A DVariation_ref.cpp653 inst.SetDelta().clear(); in SetSNV()
673 inst.SetDelta().clear(); in SetMNP()
691 inst.SetDelta().clear(); in SetMissense()
705 inst.SetDelta().clear(); in SetDuplication()
729 inst.SetDelta().clear(); in SetIdentity()
945 inst.SetDelta().clear(); in SetSNV()
978 inst.SetDelta().clear(); in SetMNP()
998 inst.SetDelta().clear(); in SetDeletion()
1015 inst.SetDelta().clear(); in SetInsertion()
1088 inst.SetDelta().front() in SetMicrosatellite()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seqfeat/
H A DVariation_ref.cpp653 inst.SetDelta().clear(); in SetSNV()
673 inst.SetDelta().clear(); in SetMNP()
691 inst.SetDelta().clear(); in SetMissense()
705 inst.SetDelta().clear(); in SetDuplication()
729 inst.SetDelta().clear(); in SetIdentity()
945 inst.SetDelta().clear(); in SetSNV()
978 inst.SetDelta().clear(); in SetMNP()
998 inst.SetDelta().clear(); in SetDeletion()
1015 inst.SetDelta().clear(); in SetInsertion()
1088 inst.SetDelta().front() in SetMicrosatellite()
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/dports/math/gecode/gecode-0916a1a/gecode/set/channel/
H A Dbool.hpp86 SetDelta d; in ChannelBool()
90 SetDelta d; in ChannelBool()
103 new (&delta) SetDelta(2,0,2,0); in ChannelBool()
197 new (&delta) SetDelta(); in propagate()
206 const SetDelta& d = static_cast<const SetDelta&>(_d); in advise()
217 SetDelta dummy; in advise()
221 SetDelta dummy; in advise()
230 SetDelta(2,0, delta.lubMin(), delta.lubMax()); in advise()
234 SetDelta(d.glbMin(), d.glbMax(), in advise()
257 SetDelta(delta.glbMin(), delta.glbMax(), 2,0); in advise()
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/dports/math/gecode/gecode-0916a1a/gecode/set/
H A Dvar-imp.hpp52 class SetDelta : public Delta { class
63 SetDelta(void);
65 SetDelta(int glbMin, int glbMax, int lubMin, int lubMax);
208 GECODE_SET_EXPORT bool include_full(Space& home,int,int,SetDelta&);
227 bool include(Space& home,int i,int j,SetDelta& d);
245 GECODE_SET_EXPORT bool exclude_full(Space& home, int, int, SetDelta&);
265 bool exclude(Space& home, int i, int j, SetDelta& d);
533 GECODE_SET_EXPORT ModEvent processLubChange(Space& home, SetDelta& d);
534 GECODE_SET_EXPORT ModEvent processGlbChange(Space& home, SetDelta& d);
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/
H A Dgaps_edit.cpp146 CDelta_ext& ext = inst.SetExt().SetDelta(); in MakeGap()
195 CDelta_ext& ext = inst.SetExt().SetDelta(); in MakeGap()
303 CDelta_ext& ext = inst.SetExt().SetDelta(); in ConvertNs2Gaps()
334 CDelta_ext& dst_data = inst.SetExt().SetDelta(); in ConvertNs2Gaps()
429 CDelta_ext& delta_ext = bioseq.SetInst().SetExt().SetDelta(); in ConvertBioseqToDelta()
446 bioseq.SetInst().SetExt().SetDelta().Set().push_back(delta_seq); in AppendGap()
452 auto& delta_set = parent.SetInst().SetExt().SetDelta().Set(); in AddBioseqAsLiteral()
459 delta_set.splice(delta_set.end(), bioseq.SetInst().SetExt().SetDelta().Set()); in AddBioseqAsLiteral()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/
H A Dgaps_edit.cpp146 CDelta_ext& ext = inst.SetExt().SetDelta(); in MakeGap()
195 CDelta_ext& ext = inst.SetExt().SetDelta(); in MakeGap()
303 CDelta_ext& ext = inst.SetExt().SetDelta(); in ConvertNs2Gaps()
334 CDelta_ext& dst_data = inst.SetExt().SetDelta(); in ConvertNs2Gaps()
429 CDelta_ext& delta_ext = bioseq.SetInst().SetExt().SetDelta(); in ConvertBioseqToDelta()
446 bioseq.SetInst().SetExt().SetDelta().Set().push_back(delta_seq); in AppendGap()
452 auto& delta_set = parent.SetInst().SetExt().SetDelta().Set(); in AddBioseqAsLiteral()
459 delta_set.splice(delta_set.end(), bioseq.SetInst().SetExt().SetDelta().Set()); in AddBioseqAsLiteral()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/variation/test/shift/
H A Dtest-shift.cpp265 …var2)->SetData().SetInstance().IsSetDelta() && !(*var2)->SetData().SetInstance().SetDelta().empty() in GetAlleles()
266 …&& (*var2)->SetData().SetInstance().SetDelta().front()->IsSetSeq() && (*var2)->SetData().SetInstan… in GetAlleles()
267 … && (*var2)->SetData().SetInstance().SetDelta().front()->SetSeq().SetLiteral().IsSetSeq_data() in GetAlleles()
268 …&& (*var2)->SetData().SetInstance().SetDelta().front()->SetSeq().SetLiteral().SetSeq_data().IsIupa… in GetAlleles()
270 …string a = (*var2)->SetData().SetInstance().SetDelta().front()->SetSeq().SetLiteral().SetSeq_data(… in GetAlleles()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/unit_test/
H A Dunit_test_gap_trim.cpp263 …nuc->SetSeq().SetInst().SetExt().SetDelta().AddLiteral("ATGATGATGCCC", objects::CSeq_inst::eMol_dn… in TryOneCDSCase()
267 nuc->SetSeq().SetInst().SetExt().SetDelta().Set().push_back(gap_seg); in TryOneCDSCase()
268 …nuc->SetSeq().SetInst().SetExt().SetDelta().AddLiteral("CCCAAATTTTAA", objects::CSeq_inst::eMol_dn… in TryOneCDSCase()
362 seq.SetInst().SetExt().SetDelta().AddLiteral(nuc_before, objects::CSeq_inst::eMol_dna); in SetUpDelta()
366 seq.SetInst().SetExt().SetDelta().Set().push_back(gap_seg); in SetUpDelta()
577 nuc->SetSeq().SetInst().SetExt().SetDelta().Set().push_back(gap_seg); in BOOST_AUTO_TEST_CASE()
629 nuc->SetSeq().SetInst().SetExt().SetDelta().Set().push_back(gap_seg); in BOOST_AUTO_TEST_CASE()
674 seq.SetInst().SetExt().SetDelta().Set().push_back(gap_seg1); in AddNsToGoodDelta()
675 …seq.SetInst().SetExt().SetDelta().AddLiteral("NNNCCCATGNNNATGATGNNN", objects::CSeq_inst::eMol_dna… in AddNsToGoodDelta()
680 seq.SetInst().SetExt().SetDelta().Set().push_back(gap_seg2); in AddNsToGoodDelta()
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/misc/hgvs/
H A Dhgvs_parser.cpp946 var_inst.SetDelta().push_back(di_del); in x_delins()
949 var_inst.SetDelta().push_back(di_ins); in x_delins()
967 var_inst.SetDelta().push_back(di); in x_deletion()
978 var_inst.SetDelta(); in x_deletion()
1031 var_inst.SetDelta().push_back(delta); in x_duplication()
1079 var_inst.SetDelta().push_back(delta); in x_nuc_subst()
1101 var_inst.SetDelta().push_back(delta); in x_nuc_inv()
1206 var_inst.SetDelta().push_back(delta); in x_translocation()
1230 var_inst.SetDelta().push_back(delta); in x_conversion()
1343 var_inst.SetDelta().push_back(delta); in x_prot_missense()
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H A Dvariation_util.cpp286 v.SetData().SetInstance().SetDelta().pop_front(); in s_ResolveIntronicOffsets()
300 v.SetData().SetInstance().SetDelta().pop_front(); in s_ResolveIntronicOffsets()
315 v.SetData().SetInstance().SetDelta().pop_back(); in s_ResolveIntronicOffsets()
388 v.SetData().SetInstance().SetDelta().push_back(delta); in s_AddIntronicOffsets()
390 v.SetData().SetInstance().SetDelta().push_front(delta); in s_AddIntronicOffsets()
406 v.SetData().SetInstance().SetDelta().push_back(delta); in s_AddIntronicOffsets()
765 inst2.SetDelta().push_back(delta2); in x_ProtToPrecursor()
854 inst.SetDelta().push_back(di); in ChangeToDelins()
858 CDelta_item& di = *inst.SetDelta().front(); in ChangeToDelins()
946 CDelta_item& delta = *inst.SetDelta().front(); in AdjustDelinsToInterval()
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H A Dhgvs_parser2.cpp1304 del_vr->SetData().SetInstance().SetDelta() = ins_vr->SetData().SetInstance().SetDelta(); in x_delins()
1331 var_inst.SetDelta().push_back(di); in x_deletion()
1348 var_inst.SetDelta(); in x_deletion()
1394 var_inst.SetDelta().push_back(delta); in x_duplication()
1453 var_inst.SetDelta().push_back(delta); in x_no_change()
1479 var_inst.SetDelta().push_back(delta); in x_nuc_subst()
1505 var_inst.SetDelta().push_back(delta); in x_nuc_inv()
1508 var_inst.SetDelta(); in x_nuc_inv()
1628 var_inst.SetDelta(); //no delta contents in x_translocation()
1649 var_inst.SetDelta().push_back(delta); in x_conversion()
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/dports/cad/opencascade/opencascade-7.6.0/src/TDataStd/
H A DTDataStd_IntPackedMap.cxx55 anAtt->SetDelta(isDelta); in Handle()
200 anInto->SetDelta(myIsDelta); in Paste()
H A DTDataStd_ByteArray.cxx63 A->SetDelta(isDelta); in SetAttr()
281 anAtt->SetDelta(myIsDelta); in Paste()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/ngalign/
H A Dunordered_spliter.cpp223 CurrBioseq->SetInst().SetExt().SetDelta().Set(); in x_SplitDeltaExt()
273 CurrBioseq->SetInst().SetExt().SetDelta().Set(); in x_SplitDeltaExt()
311 CurrBioseq->SetInst().SetExt().SetDelta().Set().push_back(InsertSeq); in x_SplitDeltaExt()
412 CurrBioseq->SetInst().SetExt().SetDelta().Set(); in x_SplitSeqData()
414 CurrBioseq->SetInst().SetExt().SetDelta().Set().push_back(DeltaSeq); in x_SplitSeqData()
460 CurrBioseq->SetInst().SetExt().SetDelta().Set(); in x_SplitSeqData()
462 CurrBioseq->SetInst().SetExt().SetDelta().Set().push_back(DeltaSeq); in x_SplitSeqData()
/dports/graphics/dcp2icc/dcp2icc-0.1/dng_sdk_1_2/dng_sdk/source/
H A Ddng_hue_sat_map.cpp166 void dng_hue_sat_map::SetDelta (uint32 hueDiv, in SetDelta() function in dng_hue_sat_map
231 SetDelta (hueDiv, 0, valDiv, zeroSatModify); in SetDelta()
/dports/graphics/sharpconstruct/sharpconstruct-0.11/include/
H A DGrabBrush.hh43 static void SetDelta( float x, float y );
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/variation/
H A Dvariation_utils.cpp200 NON_CONST_ITERATE(CVariation_inst::TDelta, delta_it, inst.SetDelta()) { in CorrectRefAllele()
311 NON_CONST_ITERATE(CVariation_inst::TDelta, delta_it, inst.SetDelta()) in x_SetReference()
363 NON_CONST_ITERATE(CVariation_inst::TDelta, delta_it, inst.SetDelta()) in x_FixAlleles()
404 inst->SetDelta().push_back(item); in x_FixAlleles()
480 NON_CONST_ITERATE(CVariation_inst::TDelta, delta_it, inst.SetDelta()) in x_FixAlleles()
521 inst->SetDelta().push_back(item); in x_FixAlleles()
1029 … inst.SetDelta().front()->SetSeq().SetLiteral().SetSeq_data().SetIupacna().Set(allele); in x_Shift()
1086 NON_CONST_ITERATE(CVariation_inst::TDelta, delta_it, inst.SetDelta()) in x_Shift()
1252 … inst.SetDelta().front()->SetSeq().SetLiteral().SetSeq_data().SetIupacna().Set(allele); in x_Shift()
1309 NON_CONST_ITERATE(CVariation_inst::TDelta, delta_it, inst.SetDelta()) in x_Shift()
[all …]
/dports/devel/awless/awless-0.1.11/vendor/gopkg.in/src-d/go-git.v4/plumbing/format/packfile/
H A Ddelta_selector.go133 otp.SetDelta(base, otp.Object)
246 target.SetDelta(base, delta)
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/ms/omssa/
H A Dmsladder.hpp201 TDelta& SetDelta(void);
402 TDelta& CLadder::SetDelta(void) in SetDelta() function in CLadder
/dports/devel/upp/upp/uppsrc/Geom/Ctrl/
H A DPlotterCtrl.cpp111 SetDelta(pos); in Layout()
217 SetDelta(d); in SetExtent()
250 SetDelta(new_pos); in ScrollInto()
266 void PlotterCtrl::SetDelta(Pointf d) in SetDelta() function in Upp::PlotterCtrl
290 SetDelta(mid - (mid - d) * (scale / s)); in SetZoom()
301 SetDelta(d); in SetZoom()
404 SetDelta(Sizef(GetSize() >> 1) - Sizef(center) * scale); in SetSc()
799 SetDelta(push_delta + Sizef(end - start)); in Drop()
1261 owner.SetDelta(owner.GetDelta() + (end - start) * owner.GetPushScale()); in Drop()

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