| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | ncbisrti.h | 136 UcharPtr text; /* Text of the line. */
138 UcharPtr keybeg; /* Start of first key. */
139 UcharPtr keylim; /* Limit of first key. */
153 UcharPtr buf; /* Dynamically allocated buffer. */
191 static UcharPtr SORTBegField(SORTLinePtr line, SORTKeyFieldPtr key,
193 static UcharPtr SORTLimField(SORTLinePtr line, SORTKeyFieldPtr key,
197 static Int4 SORTFracCompare (UcharPtr a, UcharPtr b);
198 static Int4 SORTNumCompare (UcharPtr a, UcharPtr b);
199 static Int4 SORTGetMonth (UcharPtr s, Int4 len);
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| H A D | mbalign.h | 64 MegaBlastGreedyAlign PROTO((const UcharPtr s1, Int4 len1,
65 const UcharPtr s2, Int4 len2,
71 MegaBlastAffineGreedyAlign PROTO((const UcharPtr s1, Int4 len1,
72 const UcharPtr s2, Int4 len2,
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| H A D | ncbisort.c | 497 if((buf->buf = (UcharPtr)MemNew(buf->alloc)) == NULL) in SORTInitBuf()
517 if((buf->buf = (UcharPtr) in SORTFillBuf()
532 UcharPtr ptr; in SORTFillBuf()
642 register UcharPtr beg, lim, ptr; in SORTFindLines()
697 static Int4 SORTFracCompare(register UcharPtr a, register UcharPtr b) in SORTFracCompare()
743 static Int4 SORTNumCompare(register UcharPtr a, register UcharPtr b) in SORTNumCompare()
828 static Int4 SORTGetMonth(UcharPtr s, Int4 len) in SORTGetMonth()
854 register UcharPtr texta, textb, lima, limb, translate; in SORTKeyCompare()
974 UcharPtr ap = a->text; in SORTCompare()
975 UcharPtr bp = b->text; in SORTCompare()
[all …]
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| H A D | dust.c | 129 static Int4 wo PROTO ((Int4, SeqPortPtr, Int4, DCURLOC PNTR, Int4 PNTR, UcharPtr seq));
130 static void wo1 PROTO ((Int4, UcharPtr, Int4, DCURLOC PNTR));
131 static Int4 dusttripfind PROTO ((SeqPortPtr, UcharPtr, Int4, Int4,
339 UcharPtr seq; in dust_segs()
429 Int4 PNTR invrescount, UcharPtr seq) in wo()
454 static void wo1 (Int4 len, UcharPtr seq, Int4 iwo, DCURLOC PNTR cloc) in wo1()
491 static Int4 dusttripfind (SeqPortPtr spp, UcharPtr s1, Int4 icur, Int4 max, in dusttripfind()
496 UcharPtr s2, s3; in dusttripfind()
677 UcharPtr seq; in DustGraph()
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| H A D | ncbisort.h | 99 UcharPtr translate; /* Translation applied to characters. */
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| H A D | rpsutil.h | 167 UcharPtr sequence; /* Pointer to the mem-mapped file */
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| H A D | mbalign.c | 634 Int4 MegaBlastGreedyAlign(const UcharPtr s1, Int4 len1, in MegaBlastGreedyAlign()
635 const UcharPtr s2, Int4 len2, in MegaBlastGreedyAlign()
851 Int4 MegaBlastAffineGreedyAlign (const UcharPtr s1, Int4 len1, in MegaBlastAffineGreedyAlign()
852 const UcharPtr s2, Int4 len2, in MegaBlastAffineGreedyAlign()
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| H A D | readdb.c | 3802 rdfp->buffer = (UcharPtr)Nlm_Malloc((2+rdfp->maxlen)*sizeof(Uint1)); in readdb_new_internalEx()
4628 new_t->buffer = (UcharPtr) MemNew((new_t->allocated_length)*sizeof(Uint1)); in readdb_attach()
4725 rdfp->buffer = (UcharPtr)MemFree(rdfp->buffer); in readdb_destruct_element()
5995 rdfp->buffer = (UcharPtr)MemFree(rdfp->buffer); in readdb_get_sequence()
5997 rdfp->buffer = (UcharPtr)MemNew((rdfp->allocated_length)*sizeof(Uint1)); in readdb_get_sequence()
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| H A D | actutils.c | 265 readCount += SeqPortRead(spp, (UcharPtr) buf+readCount, 25000); in LoadSequence()
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| /dports/biology/ncbi-toolkit/ncbi/biostruc/ |
| H A D | corematx.h | 87 UcharPtr LIBCALL UCVector (Int4 nl, Int4 nh);
94 void LIBCALL UCVectorFree (UcharPtr v, Int4 nl);
137 UcharPtr cvector (Int4 nl, Int4 nh);
144 void free_cvector (UcharPtr v, Int4 nl, Int4 nh);
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| H A D | corematx.c | 196 UcharPtr LIBCALL UCVector(Int4 nl, Int4 nh) in UCVector()
198 UcharPtr v = NULL; in UCVector()
199 v=(UcharPtr)MemNew((size_t)((nh-nl+1+NR_END)*sizeof(Uchar))); in UCVector()
206 return (UcharPtr)(v-nl+NR_END); in UCVector()
397 void LIBCALL UCVectorFree(UcharPtr v, Int4 nl) in UCVectorFree()
639 UcharPtr cvector(Int4 nl, Int4 nh) in cvector()
674 void free_cvector(UcharPtr v, Int4 nl, Int4 nh) in free_cvector()
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| H A D | mmdbapi1.h | 893 UcharPtr pucSwap; /* same length as coord list */
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| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | sortcmd.c | 70 static UcharPtr fold_tolower(void);
389 static UcharPtr fold_tolower(void) in fold_tolower()
391 UcharPtr buffer; in fold_tolower()
394 buffer = (UcharPtr)MemNew(UCHAR_LIM); in fold_tolower()
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| /dports/devel/swig/swig-4.0.2/Examples/test-suite/ruby/ |
| H A D | apply_strings_runme.rb | 16 x = UcharPtr.new
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| /dports/biology/ncbi-toolkit/ncbi/corelib/ |
| H A D | ncbiwin.h | 119 #undef UcharPtr
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| H A D | ncbistd.h | 130 #define UcharPtr Nlm_UcharPtr macro
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/ctools/ctransition/ |
| H A D | ct_nlmzip_streamprocs.cpp | 335 compressor_header(compressor_t *db,UcharPtr header,int read) in compressor_header()
337 UcharPtr dbuf; in compressor_header()
341 dbuf = (UcharPtr) header; in compressor_header()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/ctools/ctransition/ |
| H A D | ncbistd.hpp | 131 #define UcharPtr Nlm_UcharPtr macro
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| /dports/biology/ncbi-toolkit/ncbi/api/ |
| H A D | txalign.c | 3954 MD5Update(&context, (UcharPtr)passwd, (Uint4)length); in make_dumpgnl_links()
3956 MD5Update(&context, (UcharPtr)gnl, (Uint4)StringLen(gnl)); in make_dumpgnl_links()
3957 MD5Update(&context, (UcharPtr)segs, (Uint4)StringLen(segs)); in make_dumpgnl_links()
3958 MD5Update(&context, (UcharPtr)passwd, (Uint4)length); in make_dumpgnl_links()
3959 MD5Final(&context, (UcharPtr)buf); in make_dumpgnl_links()
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| /dports/biology/ncbi-toolkit/ncbi/sequin/ |
| H A D | sequin1.c | 12931 (UcharPtr) buffer+headlen, length - headlen); in SMReadBioseqObj()
12934 aimp = AsnIoMemOpen("r", (UcharPtr) buffer+headlen, length - headlen); in SMReadBioseqObj()
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| H A D | sequin2.c | 24078 ctr = SeqPortRead (spp, (UcharPtr)(seqbuf + read_len), INT2_MAX); in GetSequenceString()
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