/dports/biology/ncbi-toolkit/ncbi/tools/ |
H A D | ncbisam.h | 181 Uint4 field_mask, Uint4Ptr PNTR uid, 260 Uint4Ptr Data, 261 Uint4Ptr Index 275 Uint4Ptr Keys, 276 Uint4Ptr Data, 277 Uint4Ptr index 286 Uint4Ptr index); 303 Uint4Ptr Key, 304 Uint4Ptr Data 320 Uint4Ptr Keys, [all …]
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H A D | ncbisam.c | 983 Uint4Ptr KeyInfo, KeySamples; in ISAMMakeNumericIndex() 1612 Uint4Ptr Data, in NISAMSearch() 1613 Uint4Ptr Index in NISAMSearch() 1623 Uint4Ptr KeySamples; in NISAMSearch() 1854 Uint4Ptr data; in ISAMDecompressCA() 1910 Uint4Ptr fields; in ISAMDecompressFA() 1957 Uint4Ptr field, uid; in ISAMSearchTerm() 2139 Uint4Ptr SamplePos; in SISAMFindAllData() 2283 Uint4Ptr SamplePos; in SISAMSearch() 2462 Uint4Ptr Key, in NISAMFindKey() [all …]
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H A D | readdb.h | 995 Uint4Ptr list; /* array of OID's */ 996 Uint4Ptr memory; /* memory to keep the OID's (element list). 1142 Uint4Ptr header_index, sequence_index, ambchar_index; 1143 Uint4Ptr header_index_start, sequence_index_start, ambchar_index_start; 1390 readdb_get_header PROTO((ReadDBFILEPtr rdfp, Int4 sequence_number, Uint4Ptr header_index , SeqIdPtr… 1401 Uint4Ptr header_index, SeqIdPtr PNTR id, 1408 Boolean LIBCALL readdb_get_ambchar PROTO((ReadDBFILEPtr rdfp, Int4 sequence_number, Uint4Ptr PNTR … 1730 Uint4Ptr AmbCharPtr; /* ambiguity characters while 1818 Uint4Ptr AmbCharPtr,
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H A D | ncbisami.h | 156 Uint4Ptr KeySamples; /* Pointer to first sample offset
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H A D | readdb.c | 3752 rdfp->header_index = (Uint4Ptr) rdfp->indexfp->mmp; in readdb_new_internalEx() 3984 oidlist->list = (Uint4Ptr) mmfile->mmp_begin + 1; in ReadOIDList() 5721 Uint4Ptr ambchar = NULL; in readdb_get_bioseq_ex() 6263 Uint4Ptr ambchar; in readdb_get_ambchar() 9285 const Uint4Ptr ambiguities) in FDBCreateNewVolume() 9604 Uint4Ptr AmbCharPtr = NULL; in FDBAddSequence() 9729 Uint4Ptr AmbCharPtr, in FDBAddSequence2() 9926 Uint4Ptr AmbCharPtr = NULL; in process_sep() 12463 Uint4 gi1 = *(Uint4Ptr) v1; in compare_gis() 12464 Uint4 gi2 = *(Uint4Ptr) v2; in compare_gis() [all …]
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/dports/biology/ncbi-toolkit/ncbi/demo/ |
H A D | setsts.c | 156 Uint4Ptr int_ptr, tmp_ptr; in CheckHashTable() 165 int_ptr = (Uint4Ptr) MMAddress; in CheckHashTable() 185 tmp_ptr = (Uint4Ptr)(RealAddress(int_ptr[7733])); in CheckHashTable() 198 tmp_ptr = (Uint4Ptr)(RealAddress(sts->next)); in CheckHashTable()
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/dports/biology/ncbi-toolkit/ncbi/biostruc/ |
H A D | mmdbFF.c | 67 static Uint4Ptr pU4Pdbidx = NULL; 105 Uint4Ptr pU4Pdb; in LoadMMDBIdx() 124 pU4Pdbidx = (Uint4Ptr) MemNew((size_t) ((iMMDBSize)*sizeof(Uint4))); in LoadMMDBIdx() 169 register Uint4Ptr pU4Pdb = NULL; in MMDBEvalPDB()
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H A D | mmdblocl.c | 141 static Uint4Ptr pU4Pdbidx = NULL; 176 Uint4Ptr pU4Pdb; in LoadMMDBIdx() 209 pU4Pdbidx = (Uint4Ptr) MemNew((size_t) ((iMMDBSize)*sizeof(Uint4))); in LoadMMDBIdx() 292 register Uint4Ptr pU4Pdb = NULL; in MMDBEvalPDB_fb()
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H A D | corematx.h | 88 Uint4Ptr LIBCALL UI4Vector (Int4 nl, Int4 nh); 95 void LIBCALL UI4VectorFree (Uint4Ptr v, Int4 nl); 138 Uint4Ptr lvector (Int4 nl, Int4 nh); 145 void free_lvector (Uint4Ptr v, Int4 nl, Int4 nh);
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H A D | corematx.c | 210 Uint4Ptr LIBCALL UI4Vector(Int4 nl, Int4 nh) in UI4Vector() 212 Uint4Ptr v = NULL; in UI4Vector() 213 v=(Uint4Ptr)MemNew((size_t)((nh-nl+1+NR_END)*sizeof(Uint4))); in UI4Vector() 220 return (Uint4Ptr)(v-nl+NR_END); in UI4Vector() 402 void LIBCALL UI4VectorFree(Uint4Ptr v, Int4 nl) in UI4VectorFree() 644 Uint4Ptr lvector(Int4 nl, Int4 nh) in lvector() 679 void free_lvector(Uint4Ptr v, Int4 nl, Int4 nh) in free_lvector()
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/dports/biology/ncbi-toolkit/ncbi/api/ |
H A D | alignmgr.h | 337 Uint4Ptr aligncoords; 365 Uint4Ptr which_saps; 366 Uint4Ptr num_in_sap; 387 Uint4Ptr aligncoords; 745 NLM_EXTERN Uint4 binary_search_on_uint4_list(Uint4Ptr list, Uint4 pos, Uint4 listlen); 941 NLM_EXTERN Boolean AlnMgrMergeIntoMSMultByMaster(AMAlignIndexPtr amaip, Int4Ptr lens, Uint4Ptr nums… 943 …nPtr PNTR saparray, Int4Ptr starts, Int4 numseg, Int4Ptr lens, Int4 numsaps, Uint4Ptr aligncoords); 945 NLM_EXTERN Uint4 AlnMgrGetMasterGapStartForSeg(SeqAlignPtr sap, Int4 which_gap, Uint4Ptr aligncoord… 946 NLM_EXTERN Boolean AlnMgrReconcileGaps(Int4Ptr lens, Uint4Ptr aligncoords, Int4 num);
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H A D | sequtil.h | 255 Uint4Ptr PNTR lbytes); 257 Uint4Ptr PNTR lbytes); 260 Uint4Ptr PNTR lbytes); 285 Uint4Ptr PNTR lbytes); 292 Uint4Ptr PNTR lbytes, 307 Uint4Ptr PNTR lbytes); 308 NLM_EXTERN Boolean RebuildDNA_4na (Uint1Ptr buffer, Int4 length, Uint4Ptr lbytes); 320 NLM_EXTERN ByteStorePtr BSRebuildDNA_4na (ByteStorePtr from, Uint4Ptr lbytes);
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H A D | seqport.h | 154 Uint4Ptr lbytes; /* Ambiguity information */ 281 NLM_EXTERN Uint4Ptr LIBCALL MapNa2ByteToIUPACString PROTO((Uint1Ptr bytep, Uint4Ptr buf, Int4 total… 285 NLM_EXTERN Uint4Ptr LIBCALL MapNa2ByteTo4BitString PROTO((Uint1Ptr bytep, Uint4Ptr buf, Int4 total)…
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H A D | udvseq.h | 269 Uint4Ptr val2); 270 NLM_EXTERN void UDV_BigDecodeIdxFeat (Uint8 index_g, Uint4Ptr val1, Uint2Ptr val2,
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H A D | salsa.h | 266 Uint4Ptr item_id; /* array of itemID / line */ 270 Uint4Ptr alignline; /* array of alignment line index*/
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H A D | alignmgr.c | 6700 rsp_head->which_saps = (Uint4Ptr)MemNew(numblocks*sizeof(Uint4)); in AlnMgrJaggedIndex() 6701 rsp_head->num_in_sap = (Uint4Ptr)MemNew(numblocks*sizeof(Uint4)); in AlnMgrJaggedIndex() 7956 rsp->which_saps = (Uint4Ptr)MemNew(sizeof(Uint4)); in AlnMgrGetRowsForMasterSlave() 7957 rsp->num_in_sap = (Uint4Ptr)MemNew(sizeof(Uint4)); in AlnMgrGetRowsForMasterSlave() 8254 amaip->aligncoords = (Uint4Ptr)MemNew((c+1)*sizeof(Uint4)); in AlnMgrMakeSegmentedMasterSlave() 8268 rsp->which_saps = (Uint4Ptr)MemNew(c*sizeof(Uint4)); in AlnMgrMakeSegmentedMasterSlave() 8269 rsp->num_in_sap = (Uint4Ptr)MemNew(c*sizeof(Uint4)); in AlnMgrMakeSegmentedMasterSlave() 8287 rsp->which_saps = (Uint4Ptr)MemNew(c*sizeof(Uint4)); in AlnMgrMakeSegmentedMasterSlave() 8288 rsp->num_in_sap = (Uint4Ptr)MemNew(c*sizeof(Uint4)); in AlnMgrMakeSegmentedMasterSlave() 8479 rsp->which_saps = (Uint4Ptr)MemNew(c*sizeof(Uint4)); in AlnMgrMakeSegmentedMasterSlave() [all …]
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H A D | alignmgr2.h | 190 Uint4Ptr aligncoords; 196 Uint4Ptr unaln;
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/dports/biology/ncbi-toolkit/ncbi/corelib/ |
H A D | ncbiwin.h | 135 #undef Uint4Ptr
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H A D | ncbistd.h | 187 #define Uint4Ptr Nlm_Uint4Ptr macro
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H A D | matrix.c | 158 Uint4Ptr indx, in lu_back_subst() 364 Nlm_Uint4Ptr indx = (Uint4Ptr)Nlm_MemNew(sizeof(Nlm_Uint4) * mat->n_row); in Nlm_MatrixSolve()
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/dports/biology/ncbi-toolkit/ncbi/desktop/ |
H A D | ingengraph.h | 348 extern void Ing_BigDecodeIdxFeat (Uint8 index_g, Uint4Ptr val1, Uint4Ptr val2);
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H A D | udviewer.h | 352 Uint4Ptr pClr; /*Color table for Features*/ 584 NLM_EXTERN Uint4Ptr UDV_BuildFeatColorTable(void); 605 ParaGPtr pgp,RecT PNTR rc,Uint4Ptr pClr,
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H A D | apparam.h | 94 extern Boolean APArchiveUint4 (Boolean writep, APSectPtr sp, CharPtr key, Uint4Ptr pu4);
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/ctools/ctransition/ |
H A D | ncbistd.hpp | 188 #define Uint4Ptr Nlm_Uint4Ptr macro
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/dports/biology/ncbi-toolkit/ncbi/ddv/ |
H A D | ddvcreate.h | 257 NLM_EXTERN Uint4Ptr DDV_BuildBspEntitiesTbl(ValNodePtr PNTR TableHead,Int4 nBsp);
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