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Searched refs:access_s1 (Results 1 – 11 of 11) sorted by relevance

/dports/biology/viennarna/ViennaRNA-2.4.18/src/bin/
H A DRNAsnoop.c435 int **access_s1; in main() local
466 free(access_s1[i]); in main()
467 free(access_s1); in main()
469 int **access_s1; in main() local
499 k = access_s1[0][0]; in main()
501 free(access_s1[k]); in main()
502 free(access_s1); in main()
1059 int **access_s1; in redraw_output() local
1074 relative_access[i - 1] = access_s1[i + 1][i + 5] - access_s1[i][i + 4]; in redraw_output()
1077 free(access_s1[l]); in redraw_output()
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H A DRNAplex.c617 int **access_s1; in main() local
736 i = access_s1[0][0]; in main()
738 free(access_s1[i]); in main()
739 free(access_s1); in main()
948 int **access_s1; in main() local
1079 i = access_s1[0][0]; in main()
1082 free(access_s1); in main()
1415 free(access_s1); in main()
1436 i = access_s1[0][0]; in main()
1438 free(access_s1[i]); in main()
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/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/
H A Dplex.c724 (access_s1[5][idiff + 4] - access_s1[4][idiff + 4] + access_s1[5][idiff] - in fduplexfold_XS()
727 (access_s1[5][idiff + 3] - access_s1[4][idiff + 3] + access_s1[5][idiff - 1] - in fduplexfold_XS()
730 (access_s1[5][idiff + 2] - access_s1[4][idiff + 2] + access_s1[5][idiff - 2] - in fduplexfold_XS()
733 (access_s1[5][idiff + 1] - access_s1[4][idiff + 1] + access_s1[5][idiff - 3] - in fduplexfold_XS()
1119 (access_s1[5][idiff + 4] - access_s1[4][idiff + 4] + access_s1[5][idiff] - in fbacktrack_XS()
1122 (access_s1[5][idiff + 3] - access_s1[4][idiff + 3] + access_s1[5][idiff - 1] - in fbacktrack_XS()
1125 (access_s1[5][idiff + 2] - access_s1[4][idiff + 2] + access_s1[5][idiff - 2] - in fbacktrack_XS()
2053 di1 = 0.5 * (access_s1[5][i + 4] - access_s1[4][i + 4] + access_s1[5][i] - access_s1[4][i - 1]); in Lduplexfold_XS()
2055 (access_s1[5][i + 3] - access_s1[4][i + 3] + access_s1[5][i - 1] - access_s1[4][i - 2]) + in Lduplexfold_XS()
2058 (access_s1[5][i + 2] - access_s1[4][i + 2] + access_s1[5][i - 2] - access_s1[4][i - 3]) + in Lduplexfold_XS()
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H A Dplex.h30 const int **access_s1,
63 const int **access_s1,
H A Dsnoop.h129 const int **access_s1,
161 const int **access_s1,
271 const int **access_s1,
H A Dc_plex.c122 const int **access_s1,
137 const int **access_s1,
150 const int **access_s1,
166 const int **access_s1,
211 const int **access_s1, in duplexfold_CXS() argument
592 di1 = access_s1[5][i] - access_s1[4][i - 1]; in Lduplexfold_CXS()
593 di2 = access_s1[5][i - 1] - access_s1[4][i - 2] + di1; in Lduplexfold_CXS()
594 di3 = access_s1[5][i - 2] - access_s1[4][i - 3] + di2; in Lduplexfold_CXS()
595 di4 = access_s1[5][i - 3] - access_s1[4][i - 4] + di3; in Lduplexfold_CXS()
798 access_s1, in Lduplexfold_CXS()
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H A Dplex_functions.c85 const int **access_s1,
522 const int **access_s1, in duplexfold_XS() argument
643 access_s1[i - k + 1][i] + in duplexfold_XS()
644 access_s1[l - j + 1][l]; in duplexfold_XS()
666 dGx = access_s1[i - k_min + 1][i]; in duplexfold_XS()
667 dGy = access_s1[l_min - j_min + 1][l_min]; in duplexfold_XS()
821 const int **access_s1, in PKLduplexfold_XS() argument
836 (access_s1)) { in PKLduplexfold_XS()
844 access_s1, in PKLduplexfold_XS()
H A Dali_plex.c113 const int **access_s1,
129 const int **access_s1,
143 const int **access_s1,
155 const int **access_s1,
1122 access_s1, in aliduplexfold_XS()
1368 di1 = access_s1[5][i] - access_s1[4][i - 1]; in aliLduplexfold_XS()
1369 di2 = access_s1[5][i - 1] - access_s1[4][i - 2] + di1; in aliLduplexfold_XS()
1370 di3 = access_s1[5][i - 2] - access_s1[4][i - 3] + di2; in aliLduplexfold_XS()
1371 di4 = access_s1[5][i - 3] - access_s1[4][i - 4] + di3; in aliLduplexfold_XS()
1642 access_s1, in aliLduplexfold_XS()
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H A Dsnoop.c79 const int **access_s1,
1950 di[1] = access_s1[5][i] - access_s1[4][i - 1]; in snoopfold_XS_fill()
1951 di[2] = access_s1[5][i - 1] - access_s1[4][i - 2] + di[1]; in snoopfold_XS_fill()
1952 di[3] = access_s1[5][i - 2] - access_s1[4][i - 3] + di[2]; in snoopfold_XS_fill()
1953 di[4] = access_s1[5][i - 3] - access_s1[4][i - 4] + di[3]; in snoopfold_XS_fill()
2804 di1 = access_s1[5][i] - access_s1[4][i - 1]; in Lsnoop_subopt_list_XS()
2805 di2 = access_s1[5][i - 1] - access_s1[4][i - 2] + di1; in Lsnoop_subopt_list_XS()
2806 di3 = access_s1[5][i - 2] - access_s1[4][i - 3] + di2; in Lsnoop_subopt_list_XS()
2807 di4 = access_s1[5][i - 3] - access_s1[4][i - 4] + di3; in Lsnoop_subopt_list_XS()
2923 access_s1, in Lsnoop_subopt_list_XS()
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H A Dali_plex.h29 const int **access_s1,
H A DPKplex.h32 const int **access_s1,