Searched refs:access_s1 (Results 1 – 11 of 11) sorted by relevance
/dports/biology/viennarna/ViennaRNA-2.4.18/src/bin/ |
H A D | RNAsnoop.c | 435 int **access_s1; in main() local 466 free(access_s1[i]); in main() 467 free(access_s1); in main() 469 int **access_s1; in main() local 499 k = access_s1[0][0]; in main() 501 free(access_s1[k]); in main() 502 free(access_s1); in main() 1059 int **access_s1; in redraw_output() local 1074 relative_access[i - 1] = access_s1[i + 1][i + 5] - access_s1[i][i + 4]; in redraw_output() 1077 free(access_s1[l]); in redraw_output() [all …]
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H A D | RNAplex.c | 617 int **access_s1; in main() local 736 i = access_s1[0][0]; in main() 738 free(access_s1[i]); in main() 739 free(access_s1); in main() 948 int **access_s1; in main() local 1079 i = access_s1[0][0]; in main() 1082 free(access_s1); in main() 1415 free(access_s1); in main() 1436 i = access_s1[0][0]; in main() 1438 free(access_s1[i]); in main() [all …]
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/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/ |
H A D | plex.c | 724 (access_s1[5][idiff + 4] - access_s1[4][idiff + 4] + access_s1[5][idiff] - in fduplexfold_XS() 727 (access_s1[5][idiff + 3] - access_s1[4][idiff + 3] + access_s1[5][idiff - 1] - in fduplexfold_XS() 730 (access_s1[5][idiff + 2] - access_s1[4][idiff + 2] + access_s1[5][idiff - 2] - in fduplexfold_XS() 733 (access_s1[5][idiff + 1] - access_s1[4][idiff + 1] + access_s1[5][idiff - 3] - in fduplexfold_XS() 1119 (access_s1[5][idiff + 4] - access_s1[4][idiff + 4] + access_s1[5][idiff] - in fbacktrack_XS() 1122 (access_s1[5][idiff + 3] - access_s1[4][idiff + 3] + access_s1[5][idiff - 1] - in fbacktrack_XS() 1125 (access_s1[5][idiff + 2] - access_s1[4][idiff + 2] + access_s1[5][idiff - 2] - in fbacktrack_XS() 2053 di1 = 0.5 * (access_s1[5][i + 4] - access_s1[4][i + 4] + access_s1[5][i] - access_s1[4][i - 1]); in Lduplexfold_XS() 2055 (access_s1[5][i + 3] - access_s1[4][i + 3] + access_s1[5][i - 1] - access_s1[4][i - 2]) + in Lduplexfold_XS() 2058 (access_s1[5][i + 2] - access_s1[4][i + 2] + access_s1[5][i - 2] - access_s1[4][i - 3]) + in Lduplexfold_XS() [all …]
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H A D | plex.h | 30 const int **access_s1, 63 const int **access_s1,
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H A D | snoop.h | 129 const int **access_s1, 161 const int **access_s1, 271 const int **access_s1,
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H A D | c_plex.c | 122 const int **access_s1, 137 const int **access_s1, 150 const int **access_s1, 166 const int **access_s1, 211 const int **access_s1, in duplexfold_CXS() argument 592 di1 = access_s1[5][i] - access_s1[4][i - 1]; in Lduplexfold_CXS() 593 di2 = access_s1[5][i - 1] - access_s1[4][i - 2] + di1; in Lduplexfold_CXS() 594 di3 = access_s1[5][i - 2] - access_s1[4][i - 3] + di2; in Lduplexfold_CXS() 595 di4 = access_s1[5][i - 3] - access_s1[4][i - 4] + di3; in Lduplexfold_CXS() 798 access_s1, in Lduplexfold_CXS() [all …]
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H A D | plex_functions.c | 85 const int **access_s1, 522 const int **access_s1, in duplexfold_XS() argument 643 access_s1[i - k + 1][i] + in duplexfold_XS() 644 access_s1[l - j + 1][l]; in duplexfold_XS() 666 dGx = access_s1[i - k_min + 1][i]; in duplexfold_XS() 667 dGy = access_s1[l_min - j_min + 1][l_min]; in duplexfold_XS() 821 const int **access_s1, in PKLduplexfold_XS() argument 836 (access_s1)) { in PKLduplexfold_XS() 844 access_s1, in PKLduplexfold_XS()
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H A D | ali_plex.c | 113 const int **access_s1, 129 const int **access_s1, 143 const int **access_s1, 155 const int **access_s1, 1122 access_s1, in aliduplexfold_XS() 1368 di1 = access_s1[5][i] - access_s1[4][i - 1]; in aliLduplexfold_XS() 1369 di2 = access_s1[5][i - 1] - access_s1[4][i - 2] + di1; in aliLduplexfold_XS() 1370 di3 = access_s1[5][i - 2] - access_s1[4][i - 3] + di2; in aliLduplexfold_XS() 1371 di4 = access_s1[5][i - 3] - access_s1[4][i - 4] + di3; in aliLduplexfold_XS() 1642 access_s1, in aliLduplexfold_XS() [all …]
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H A D | snoop.c | 79 const int **access_s1, 1950 di[1] = access_s1[5][i] - access_s1[4][i - 1]; in snoopfold_XS_fill() 1951 di[2] = access_s1[5][i - 1] - access_s1[4][i - 2] + di[1]; in snoopfold_XS_fill() 1952 di[3] = access_s1[5][i - 2] - access_s1[4][i - 3] + di[2]; in snoopfold_XS_fill() 1953 di[4] = access_s1[5][i - 3] - access_s1[4][i - 4] + di[3]; in snoopfold_XS_fill() 2804 di1 = access_s1[5][i] - access_s1[4][i - 1]; in Lsnoop_subopt_list_XS() 2805 di2 = access_s1[5][i - 1] - access_s1[4][i - 2] + di1; in Lsnoop_subopt_list_XS() 2806 di3 = access_s1[5][i - 2] - access_s1[4][i - 3] + di2; in Lsnoop_subopt_list_XS() 2807 di4 = access_s1[5][i - 3] - access_s1[4][i - 4] + di3; in Lsnoop_subopt_list_XS() 2923 access_s1, in Lsnoop_subopt_list_XS() [all …]
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H A D | ali_plex.h | 29 const int **access_s1,
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H A D | PKplex.h | 32 const int **access_s1,
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