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Searched refs:ajFmtPrintAppS (Results 1 – 25 of 99) sorted by relevance

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/dports/biology/emboss/EMBOSS-6.6.0/emboss/
H A Dmerger.c256 ajFmtPrintAppS(&tmpstr, "WARNING: *************************" in merger_Merge()
273 ajFmtPrintAppS(&tmpstr, "WARNING: **************************" in merger_Merge()
286 ajFmtPrintAppS(&tmpstr, in merger_Merge()
288 ajFmtPrintAppS(&tmpstr, "There is an equal amount of unaligned " in merger_Merge()
291 ajFmtPrintAppS(&tmpstr, "Sequence %s is being arbitrarily chosen " in merger_Merge()
302 ajFmtPrintAppS(&tmpstr, in merger_Merge()
397 ajFmtPrintAppS(&tmpstr, "WARNING: ***************************" in merger_Merge()
399 ajFmtPrintAppS(&tmpstr, "The region of alignment ends at " in merger_Merge()
417 ajFmtPrintAppS(&tmpstr, "The region of alignment ends at " in merger_Merge()
428 ajFmtPrintAppS(&tmpstr, "WARNING: ************************" in merger_Merge()
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H A Dpatmatmotifs.c103 ajFmtPrintAppS(&tmpstr, "Full: %B\n", full); in main()
104 ajFmtPrintAppS(&tmpstr, "Prune: %B\n", prune); in main()
105 ajFmtPrintAppS(&tmpstr, "Data_file: %F\n", inf); in main()
184 ajFmtPrintAppS(&tailstr, "Motif: %S\n", name); in main()
185 ajFmtPrintAppS(&tailstr, "Count: %d\n\n", number); in main()
187 ajFmtPrintAppS(&tailstr, "%S\n", text); in main()
189 ajFmtPrintAppS(&tailstr, "\n***************\n\n"); in main()
H A Drestrict.c329 ajFmtPrintAppS(&tmpStr,"DNA is circular\n"); in restrict_reportHits()
331 ajFmtPrintAppS(&tmpStr,"DNA is linear\n"); in restrict_reportHits()
505 ajFmtPrintAppS(&fragStr," %d\n",fx[i]); in restrict_reportHits()
568 ajFmtPrintAppS(&fragStr,"\n%S:\n[%S]", in restrict_reportHits()
646 ajFmtPrintAppS(&fragStr,"\n"); in restrict_reportHits()
647 ajFmtPrintAppS(&fragStr,"\t%d",fx[j]); in restrict_reportHits()
649 ajFmtPrintAppS(&fragStr,"\n"); in restrict_reportHits()
679 ajFmtPrintAppS(&fragStr,"\n%S:\n[%S]", in restrict_reportHits()
748 ajFmtPrintAppS(&fragStr,"\n"); in restrict_reportHits()
749 ajFmtPrintAppS(&fragStr,"\t%d",fx[j]); in restrict_reportHits()
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H A Drecoder.c724 ajFmtPrintAppS(tailstr,"%s:\n",title); in recoder_fmt_seq()
728 ajFmtPrintAppS(tailstr,"%-7d",start); in recoder_fmt_seq()
732 ajFmtPrintAppS(tailstr,"%c",p[i]); in recoder_fmt_seq()
735 ajFmtPrintAppS(tailstr," "); in recoder_fmt_seq()
737 ajFmtPrintAppS(tailstr,"\n%-7d",(start+m)); in recoder_fmt_seq()
746 ajFmtPrintAppS(tailstr,"%c",p[i]); in recoder_fmt_seq()
749 ajFmtPrintAppS(tailstr," "); in recoder_fmt_seq()
751 ajFmtPrintAppS(tailstr,"\n"); in recoder_fmt_seq()
755 ajFmtPrintAppS(tailstr,"\n\n"); in recoder_fmt_seq()
H A Dsilent.c630 ajFmtPrintAppS(tailstr,"%s:\n",title); in silent_fmt_sequence()
634 ajFmtPrintAppS(tailstr,"%-7d",start); in silent_fmt_sequence()
638 ajFmtPrintAppS(tailstr,"%c",p[i]); in silent_fmt_sequence()
641 ajFmtPrintAppS(tailstr," "); in silent_fmt_sequence()
643 ajFmtPrintAppS(tailstr,"\n%-7d",(start+m+1)); in silent_fmt_sequence()
652 ajFmtPrintAppS(tailstr,"%c",p[i]); in silent_fmt_sequence()
655 ajFmtPrintAppS(tailstr," "); in silent_fmt_sequence()
657 ajFmtPrintAppS(tailstr,"\n"); in silent_fmt_sequence()
661 ajFmtPrintAppS(tailstr,"\n\n"); in silent_fmt_sequence()
H A Dwater.c161 ajFmtPrintAppS(&tmpstr,"Longest_Similarity = %5.2f%%\n", in main()
163 ajFmtPrintAppS(&tmpstr,"Shortest_Identity = %5.2f%%\n", in main()
165 ajFmtPrintAppS(&tmpstr,"Shortest_Similarity = %5.2f%%", in main()
H A Dneedle.c169 ajFmtPrintAppS(&tmpstr,"Longest_Similarity = %5.2f%%\n", in main()
171 ajFmtPrintAppS(&tmpstr,"Shortest_Identity = %5.2f%%\n", in main()
173 ajFmtPrintAppS(&tmpstr,"Shortest_Similarity = %5.2f%%", in main()
H A Dneedleall.c190 ajFmtPrintAppS(&tmpstr,"Longest_Similarity = %5.2f%%\n", in main()
192 ajFmtPrintAppS(&tmpstr,"Shortest_Identity = %5.2f%%\n", in main()
194 ajFmtPrintAppS(&tmpstr,"Shortest_Similarity = %5.2f%%", in main()
H A Ddiffseq.c327 ajFmtPrintAppS(&tmpstr, "%S overlap starts at %d\n", in diffseq_Diff()
330 ajFmtPrintAppS(&tmpstr, "%S overlap starts at %d\n\n", in diffseq_Diff()
441 ajFmtPrintAppS(&tmp, "Overlap_end: %d in %S\n", in diffseq_Diff()
446 ajFmtPrintAppS(&tmp, "\n"); in diffseq_Diff()
447 ajFmtPrintAppS(&tmp, "SNP_count: %d\n", snps); in diffseq_Diff()
448 ajFmtPrintAppS(&tmp, "Transitions: %d\n", transitions); in diffseq_Diff()
449 ajFmtPrintAppS(&tmp, "Transversions: %d\n", transversions); in diffseq_Diff()
733 ajFmtPrintAppS(strval, " %S='%S'", tagnam, tagval); in diffseq_AddTags()
735 ajFmtPrintAppS(strval, " %S", tagnam); in diffseq_AddTags()
H A Detandem.c371 ajFmtPrintAppS(&tmpstr, "Threshold: %d\n", thresh); in main()
372 ajFmtPrintAppS(&tmpstr, "Minrepeat: %d\n", nmin); in main()
373 ajFmtPrintAppS(&tmpstr, "Maxrepeat: %d\n", nmax); in main()
374 ajFmtPrintAppS(&tmpstr, "Mismatch: %B\n", mismatch); in main()
375 ajFmtPrintAppS(&tmpstr, "Uniform: %B\n", uniform); in main()
H A Deprimer32.c751 ajFmtPrintAppS(&str,";"); in eprimer32_send_range_pair()
755 ajFmtPrintAppS(&str, "%u,%u", start, end-start+1); in eprimer32_send_range_pair()
761 ajFmtPrintAppS(&str, ",%u,%u", start, end-start+1); in eprimer32_send_range_pair()
765 ajFmtPrintAppS(&str, ",,"); in eprimer32_send_range_pair()
772 ajFmtPrintAppS(&str,";"); in eprimer32_send_range_pair()
773 ajFmtPrintAppS(&str, ",,"); in eprimer32_send_range_pair()
777 ajFmtPrintAppS(&str, ",%u,%u", start, end-start+1); in eprimer32_send_range_pair()
782 ajFmtPrintAppS(&str, "\n"); in eprimer32_send_range_pair()
H A Dshowfeat.c1008 ajFmtPrintAppS(tagstmp, " %S=\"%S\"", tagnam, tagval); in showfeat_MatchPatternTags()
1010 ajFmtPrintAppS(tagstmp, " %S", tagnam); in showfeat_MatchPatternTags()
1027 ajFmtPrintAppS(tagstmp, " %S=\"%S\"", tagnam, tagval); in showfeat_MatchPatternTags()
1029 ajFmtPrintAppS(tagstmp, " %S", tagnam); in showfeat_MatchPatternTags()
1068 ajFmtPrintAppS(posout, ","); in showfeat_AddPos()
1070 ajFmtPrintAppS(posout, "%d-%d", start, end); in showfeat_AddPos()
H A Dcacheensembl.c195 ajFmtPrintAppS(&special, "SpeciesPrefix=%S;", in main()
199 ajFmtPrintAppS(&special, "SpeciesIdentifier=%u;", in main()
H A Dequicktandem.c102 ajFmtPrintAppS(&tmpstr, "Threshold: %d\n", thresh); in main()
103 ajFmtPrintAppS(&tmpstr, "Maxrepeat: %d\n", maxrepeat); in main()
/dports/biology/emboss/EMBOSS-6.6.0/ajax/core/
H A Dajfeatwrite.c1407 ajFmtPrintAppS(&pos,"%S:",gf->Remote); in featWriteEmbl()
1413 ajFmtPrintAppS(&pos,"%S",gf->Label); in featWriteEmbl()
1418 ajFmtPrintAppS(&pos,"<%d",gf->Start); in featWriteEmbl()
1428 ajFmtPrintAppS(&pos,"%d",gf->Start); in featWriteEmbl()
1775 ajFmtPrintAppS(&pos,"%S:",gf->Remote); in feattableWriteRefseq()
1781 ajFmtPrintAppS(&pos,"%S",gf->Label); in feattableWriteRefseq()
1786 ajFmtPrintAppS(&pos,"<%d",gf->Start); in feattableWriteRefseq()
1796 ajFmtPrintAppS(&pos,"%d",gf->Start); in feattableWriteRefseq()
1941 ajFmtPrintAppS(&pos,"<%d",gf->Start); in featWriteRefseqp()
1946 ajFmtPrintAppS(&pos,"%d",gf->Start); in featWriteRefseqp()
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H A Dajassemwrite.c274 ajFmtPrintAppS(&headertext, "@SQ\tSN:%S\tLN:%d", in assemoutWriteBam()
278 ajFmtPrintAppS(&headertext, "\tUR:%S", c->URI); in assemoutWriteBam()
281 ajFmtPrintAppS(&headertext, "\tM5:%S", c->MD5); in assemoutWriteBam()
286 ajFmtPrintAppS(&headertext, "\n"); in assemoutWriteBam()
293 ajFmtPrintAppS(&headertext, in assemoutWriteBam()
435 ajFmtPrintAppS(&headertext, "\n"); in assemoutWriteNextBam()
442 ajFmtPrintAppS(&headertext, in assemoutWriteNextBam()
1032 ajFmtPrintAppS(&cigar, "%d%c", count, mode); in assemoutMakeCigar()
1068 ajFmtPrintAppS(&cigar, "%d%c", count, mode); in assemoutMakeCigar()
1476 ajFmtPrintAppS(&CIGAR, "%dS", r->x2 - 1); in assemoutWriteSamAlignment()
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H A Dajvarwrite.c600 ajFmtPrintAppS(&meta,"##%S=%S\n", in varoutWriteBcf()
610 ajFmtPrintAppS(&meta, in varoutWriteBcf()
653 ajFmtPrintAppS(&meta, ";"); in varoutWriteBcf()
657 ajFmtPrintAppS(&meta, ",Mixture="); in varoutWriteBcf()
672 ajFmtPrintAppS(&meta, ";"); in varoutWriteBcf()
676 ajFmtPrintAppS(&meta, "\">\n"); in varoutWriteBcf()
889 ajFmtPrintAppS(&meta, in varoutWriteNextBcf()
933 ajFmtPrintAppS(&meta, ";"); in varoutWriteNextBcf()
937 ajFmtPrintAppS(&meta, ",Mixture="); in varoutWriteNextBcf()
952 ajFmtPrintAppS(&meta, ";"); in varoutWriteNextBcf()
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H A Dajvarbcf.c525 ajFmtPrintAppS(s, "%d", b->tid); in ajVarbcfFmtCore()
529 ajFmtPrintAppS(s,"%d\t", b->pos+1); in ajVarbcfFmtCore()
540 ajFmtPrintAppS(s, "%.3g", b->qual); in ajVarbcfFmtCore()
575 ajFmtPrintAppS(s, "%u", d[k]); in ajVarbcfFmtCore()
580 ajFmtPrintAppS(s, "%u",((ajushort*)b->gi[i].data)[j]); in ajVarbcfFmtCore()
584 ajFmtPrintAppS(s, "%u",((unsigned char*)b->gi[i].data)[j]); in ajVarbcfFmtCore()
588 ajFmtPrintAppS(s, "%u",((ajint*)b->gi[i].data)[j]); in ajVarbcfFmtCore()
612 ajFmtPrintAppS(s, "%.2f", f[k]); in ajVarbcfFmtCore()
H A Dajalign.c2882 ajFmtPrintAppS(&tmpstr, " (%S)", in alignWriteHeaderNum()
2885 ajFmtPrintAppS(&tmpstr, " %S", in alignWriteHeaderNum()
6190 ajFmtPrintAppS(cigar, "%uM",m); in alignCigar()
6196 ajFmtPrintAppS(cigar, "%uI",d); in alignCigar()
6206 ajFmtPrintAppS(cigar, "%uM",m); in alignCigar()
6212 ajFmtPrintAppS(cigar, "%uD",i); in alignCigar()
6229 ajFmtPrintAppS(cigar, "%uD",d); in alignCigar()
6236 ajFmtPrintAppS(cigar, "%uI",i); in alignCigar()
6243 ajFmtPrintAppS(cigar, "%uM",m); in alignCigar()
6245 ajFmtPrintAppS(cigar, "%uD",d); in alignCigar()
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H A Dajassemread.c1538 ajFmtPrintAppS(&cigarstr, "%u%c", in asseminBamAlignmentRec2Emboss()
1601 ajFmtPrintAppS(&tagstr,"%s", &d[dpos]); in asseminBamAlignmentRec2Emboss()
1608 ajFmtPrintAppS(&tagstr,"%f", (float) *(&d[dpos])); in asseminBamAlignmentRec2Emboss()
1613 ajFmtPrintAppS(&tagstr,"%lf", (double) *(&d[dpos])); in asseminBamAlignmentRec2Emboss()
1622 ajFmtPrintAppS(&tagstr,"%d", in asseminBamAlignmentRec2Emboss()
1627 ajFmtPrintAppS(&tagstr,"%hd", in asseminBamAlignmentRec2Emboss()
1633 ajFmtPrintAppS(&tagstr,"%d", in asseminBamAlignmentRec2Emboss()
1639 ajFmtPrintAppS(&tagstr,"%u", in asseminBamAlignmentRec2Emboss()
1644 ajFmtPrintAppS(&tagstr,"%hu", in asseminBamAlignmentRec2Emboss()
1650 ajFmtPrintAppS(&tagstr,"%u", in asseminBamAlignmentRec2Emboss()
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/dports/biology/emboss/EMBOSS-6.6.0/ajax/ensembl/
H A Densbaseadaptor.c795 ajFmtPrintAppS(&columnnames, "%s, ", columnnamesrray[i]); in baseadaptorFetchAllStatement()
825 ajFmtPrintAppS(&joins, in baseadaptorFetchAllStatement()
838 ajFmtPrintAppS(&tablenames, "%s, ", ba->Tablenames[i]); in baseadaptorFetchAllStatement()
852 ajFmtPrintAppS(Pstatement, " %S FROM %S(%S)", in baseadaptorFetchAllStatement()
856 ajFmtPrintAppS(Pstatement, " %S", joins); in baseadaptorFetchAllStatement()
860 ajFmtPrintAppS(Pstatement, " WHERE %S", constraint); in baseadaptorFetchAllStatement()
866 ajFmtPrintAppS(Pstatement, " WHERE %s", ba->Defaultcondition); in baseadaptorFetchAllStatement()
869 ajFmtPrintAppS(Pstatement, " %s", ba->Finalcondition); in baseadaptorFetchAllStatement()
1249 ajFmtPrintAppS(&csv, "%u, ", *((ajuint *) keyarray[i])); in ensBaseadaptorFetchAllbyIdentifiers()
1459 ajFmtPrintAppS(Pstatement, in baseadaptorRetrieveAllStatement()
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H A Densqcalignment.c3020 ajFmtPrintAppS(Pstr, "%S:%d-%d:%d", anchor, start, end, strand); in ensQcalignmentReport()
3043 ajFmtPrintAppS(Pstr, in ensQcalignmentReport()
3061 ajFmtPrintAppS(Pstr, in ensQcalignmentReport()
3077 ajFmtPrintAppS(Pstr, in ensQcalignmentReport()
3085 ajFmtPrintAppS(Pstr, " (%d)", length); in ensQcalignmentReport()
3134 ajFmtPrintAppS(Pstr, in ensQcalignmentReport()
3152 ajFmtPrintAppS(Pstr, in ensQcalignmentReport()
3168 ajFmtPrintAppS(Pstr, in ensQcalignmentReport()
3176 ajFmtPrintAppS(Pstr, " (%d)", length); in ensQcalignmentReport()
3952 ajFmtPrintAppS(&constraint, in ensQcalignmentadaptorFetchAllbyQcdatabaseQuery()
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H A Densattribute.c880 ajFmtPrintAppS(&statement, " AND attrib_type.code = '%s'", txtcode); in ensAttributeadaptorFetchAllbyGene()
957 ajFmtPrintAppS(&statement, " AND attrib_type.code = '%s'", txtcode); in ensAttributeadaptorFetchAllbyOperon()
1034 ajFmtPrintAppS(&statement, " AND attrib_type.code = '%s'", txtcode); in ensAttributeadaptorFetchAllbyOperontranscript()
1111 ajFmtPrintAppS(&statement, " AND attrib_type.code = '%s'", txtcode); in ensAttributeadaptorFetchAllbySeqregion()
1246 ajFmtPrintAppS(&statement, " AND attrib_type.code = '%s'", txtcode); in ensAttributeadaptorFetchAllbyTranscript()
1323 ajFmtPrintAppS(&statement, " AND attrib_type.code = '%s'", txtcode); in ensAttributeadaptorFetchAllbyTranslation()
/dports/biology/emboss/EMBOSS-6.6.0/ajax/ajaxdb/
H A Dajtextdb.c7062 ajFmtPrintAppS(&get, in textAccessMrs5()
7081 ajFmtPrintAppS(&get, in textAccessMrs5()
7092 ajFmtPrintAppS(&get, in textAccessMrs5()
7094 ajFmtPrintAppS(&get, in textAccessMrs5()
7102 ajFmtPrintAppS(&get, in textAccessMrs5()
7234 ajFmtPrintAppS(&get, in textAccessMrs4()
7253 ajFmtPrintAppS(&get, in textAccessMrs4()
7266 ajFmtPrintAppS(&get, in textAccessMrs4()
7274 ajFmtPrintAppS(&get, in textAccessMrs4()
7406 ajFmtPrintAppS(&get, in textAccessMrs3()
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H A Dajmart.c2649 ajFmtPrintAppS(&filterval,",%S",nameval); in ajMartFilterMatch()
2743 ajFmtPrintAppS(&mq->Query,"formatter = \"%S\" ", in ajMartMakeQueryXml()
2751 ajFmtPrintAppS(&mq->Query,"count = \"1\" "); in ajMartMakeQueryXml()
2754 ajFmtPrintAppS(&mq->Query,"header = \"1\" "); in ajMartMakeQueryXml()
2762 ajFmtPrintAppS(&mq->Query,">"); in ajMartMakeQueryXml()
2768 ajFmtPrintAppS(&mq->Query,"<Dataset "); in ajMartMakeQueryXml()
2770 ajFmtPrintAppS(&mq->Query,"interface = \"%S\" ", in ajMartMakeQueryXml()
2772 ajFmtPrintAppS(&mq->Query,">"); in ajMartMakeQueryXml()
2792 ajFmtPrintAppS(&mq->Query,"</Dataset>"); in ajMartMakeQueryXml()
2795 ajFmtPrintAppS(&mq->Query,"</Query>"); in ajMartMakeQueryXml()
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