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Searched refs:ajFmtPrintS (Results 1 – 25 of 162) sorted by relevance

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/dports/biology/emboss/EMBOSS-6.6.0/emboss/
H A Ddiffseq.c374 ajFmtPrintS(&tmp, "*length %d", diff->Len2); in diffseq_Diff()
379 ajFmtPrintS(&tmp, "*strand -"); in diffseq_Diff()
396 ajFmtPrintS(&tmp, "*end %d", diff->End2); in diffseq_Diff()
401 ajFmtPrintS(&tmp, "*sequence %S", tmpseq); in diffseq_Diff()
418 ajFmtPrintS(&tmp, "*end %d", diff->End2); in diffseq_Diff()
438 ajFmtPrintS(&tmp, "Overlap_end: %d in %S\n", in diffseq_Diff()
567 ajFmtPrintS(&conflictstr, "%S -> %S", in diffseq_WordMatchListConvDiffToFeat()
571 ajFmtPrintS(&conflictstr, "MISSING"); in diffseq_WordMatchListConvDiffToFeat()
613 ajFmtPrintS(&conflictstr, "%S -> %S", in diffseq_WordMatchListConvDiffToFeat()
617 ajFmtPrintS(&conflictstr, "MISSING"); in diffseq_WordMatchListConvDiffToFeat()
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H A Dtfm.c92 ajFmtPrintS(&cmd,"%S %S",pager,path); in main()
173 ajFmtPrintS(&doctest,"%S%cprograms%ctext",roottmp,SLASH_CHAR, in tfm_FindAppDocRoot()
191 ajFmtPrintS(&tmpstr,"%Sdoc",docrootinst); in tfm_FindAppDocRoot()
208 ajFmtPrintS(docroot,"%Shtml%sembassy%s%S%s", in tfm_FindAppDocRoot()
214 ajFmtPrintS(docroot,"%Sprograms%shtml%s", in tfm_FindAppDocRoot()
217 ajFmtPrintS(docroot,"%Sprograms%shtml%s", in tfm_FindAppDocRoot()
222 ajFmtPrintS(docroot,"%Sprograms%stext%s",docrootinst,SLASH_STRING, in tfm_FindAppDocRoot()
240 ajFmtPrintS(docroot, "embassy/%S/emboss_doc/", embassy); in tfm_FindAppDocRoot()
346 ajFmtPrintS(&newpath,"%s",root); in tfm_FixImages()
360 ajFmtPrintS(line,"%Sfile:/%S%S%S",pre,newpath,name,post); in tfm_FixImages()
H A Dpepcoil.c271 ajFmtPrintS(&tmpstr, "*probability %.3f", in main()
274 ajFmtPrintS(&tmpstr, "*pos %d", in main()
329 ajFmtPrintS(&tmpstr, "*frames %d..%d", in main()
334 ajFmtPrintS(&tmpstr, "*predict coiled"); in main()
336 ajFmtPrintS(&tmpstr, "*probability %.3f", in main()
339 ajFmtPrintS(&tmpstr, "*pos %d", in main()
385 ajFmtPrintS(&tmpstr, "*predict coiled"); in main()
387 ajFmtPrintS(&tmpstr, "*probability %.3f", in main()
390 ajFmtPrintS(&tmpstr, "*pos %d", in main()
413 ajFmtPrintS(&tmpstr, "*probability %.3f", in main()
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H A Djaspscan.c365 ajFmtPrintS(&jdir,"%S%S",dir,jaspdir); in jaspscan_GetFileList()
369 ajFmtPrintS(&wstr,"%s%s",wild,J_EXT); in jaspscan_GetFileList()
1240 ajFmtPrintS(&str,"*pc %.3f",hit->scorepc); in jaspscan_ReportHits()
1243 ajFmtPrintS(&str,"*id %S",hit->matname); in jaspscan_ReportHits()
1252 ajFmtPrintS(&str,"*name %S",info->name); in jaspscan_ReportHits()
1264 ajFmtPrintS(&str,"*class %S",info->klass); in jaspscan_ReportHits()
1276 ajFmtPrintS(&str,"*pseq %S",info->protseq); in jaspscan_ReportHits()
1282 ajFmtPrintS(&str,"*exp %S",info->exp); in jaspscan_ReportHits()
1288 ajFmtPrintS(&str,"*pmid %S",info->pmid); in jaspscan_ReportHits()
1295 ajFmtPrintS(&str,"*info %.3f",fnum); in jaspscan_ReportHits()
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H A Ddensity.c137 ajFmtPrintS(&hdr, "Window size = %d\n",window); in main()
329 ajFmtPrintS(&st,"Window = %d. A=Black C=Red G=Green T=Blue",window); in density_addquadgraph()
447 ajFmtPrintS(&st,"Window = %d. AT=Green GC=Blue",window); in density_adddualgraph()
523 ajFmtPrintS(&str,"*a %.3f",density->a[i]); in density_ReportHits()
526 ajFmtPrintS(&str,"*c %.3f",density->c[i]); in density_ReportHits()
529 ajFmtPrintS(&str,"*g %.3f",density->g[i]); in density_ReportHits()
532 ajFmtPrintS(&str,"*t %.3f",density->t[i]); in density_ReportHits()
535 ajFmtPrintS(&str,"*at %.3f",density->at[i]); in density_ReportHits()
538 ajFmtPrintS(&str,"*gc %.3f",density->gc[i]); in density_ReportHits()
H A Dpepdigest.c154 ajFmtPrintS(&tmpStr, in main()
173 ajFmtPrintS(&tmpStr, in main()
193 ajFmtPrintS(&tmpStr, in main()
321 ajFmtPrintS(&tmpStr, "*molwt %.3f", fr->molwt); in pepdigest_report_hits()
325 ajFmtPrintS(&tmpStr, "*cterm %c", *(s+(fr->start)-1)); in pepdigest_report_hits()
331 ajFmtPrintS(&tmpStr, "*nterm %c", *(s+(fr->end+1))); in pepdigest_report_hits()
H A Dembossupdate.c91 ajFmtPrintS(&updateurl, in main()
95 ajFmtPrintS(&updateurl, in main()
133 ajFmtPrintS(&fixversion, "%S.0", initversion); in main()
140 ajFmtPrintS(&fixversion, "%S.%u", initversion, lastfix); in main()
H A Dfuzztran.c269 ajFmtPrintS(&s, "*pat %S", v); in fuzztran_SourceFeature()
274 ajFmtPrintS(&s, "*mismatch %S", v); in fuzztran_SourceFeature()
277 ajFmtPrintS(&s, "*frame %d", framenum); in fuzztran_SourceFeature()
280 ajFmtPrintS(&s, "*start %d", ajFeatGetStart(protfeature)); in fuzztran_SourceFeature()
283 ajFmtPrintS(&s, "*end %d", ajFeatGetEnd(protfeature)); in fuzztran_SourceFeature()
289 ajFmtPrintS(&s, "*translation %S", t); in fuzztran_SourceFeature()
H A Djaspextract.c160 ajFmtPrintS(&dir,"%S%s",datadir,Jprefix[i].Directory); in jaspextract_openoutdirs()
229 ajFmtPrintS(&matrixfile,"%S%s",directory,MATRIXFILE); in jaspextract_copyfiles()
268 ajFmtPrintS(&dest,"%S%s%c%S",datadir,Jprefix[i].Directory,SLASH_CHAR, in jaspextract_copyfiles()
333 ajFmtPrintS(&matrixfile,"%S%s",directory,MATRIXFILE); in jaspextract_readmatrixlist()
445 ajFmtPrintS(&dest,"%S%c%s",directory,SLASH_CHAR,MATRIXFILE); in jaspextract_writematrixfile()
H A Deprimer32.c641 ajFmtPrintS(&str, "%s=", tag); in eprimer32_send_range()
655 ajFmtPrintS(&str, "\n"); in eprimer32_send_range()
690 ajFmtPrintS(&str, "%s=", tag); in eprimer32_send_range2()
697 ajFmtPrintS(&str, "%d-%d ", start, end); in eprimer32_send_range2()
702 ajFmtPrintS(&str, "\n"); in eprimer32_send_range2()
746 ajFmtPrintS(&str, "%s=", tag); in eprimer32_send_range_pair()
812 ajFmtPrintS(&str, "%s=%d\n", tag, value); in eprimer32_send_int()
840 ajFmtPrintS(&str, "%s=%f\n", tag, value); in eprimer32_send_float()
868 ajFmtPrintS(&str, "%s=%d\n", tag, value?1:0); in eprimer32_send_bool()
900 ajFmtPrintS(&str, "%s=%S\n", tag, value); in eprimer32_send_string()
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H A Dpepinfo.c219 ajFmtPrintS(&tmpa, "%s residues in %s from position %d to %d", in main()
235 ajFmtPrintS(&tmpa, "Properties of residues in %s from position " in main()
244 ajFmtPrintS(&tmpa, "%s residues in %s from position %d to %d", in main()
247 ajFmtPrintS(&tmpb, "%s residues", propertyTitles[i]); in main()
339 ajFmtPrintS(&tmpa, "Results from %s", hydroTitles[i]); in main()
347 ajFmtPrintS(&tmpa, in main()
H A Deprimer3.c618 ajFmtPrintS(&str, "%s=", tag); in eprimer3_send_range()
627 ajFmtPrintS(&str, "%d,%d ", start, end-start+1); in eprimer3_send_range()
632 ajFmtPrintS(&str, "\n"); in eprimer3_send_range()
667 ajFmtPrintS(&str, "%s=", tag); in eprimer3_send_range2()
674 ajFmtPrintS(&str, "%d-%d ", start, end); in eprimer3_send_range2()
679 ajFmtPrintS(&str, "\n"); in eprimer3_send_range2()
708 ajFmtPrintS(&str, "%s=%d\n", tag, value); in eprimer3_send_int()
736 ajFmtPrintS(&str, "%s=%f\n", tag, value); in eprimer3_send_float()
764 ajFmtPrintS(&str, "%s=%d\n", tag, value?1:0); in eprimer3_send_bool()
796 ajFmtPrintS(&str, "%s=%S\n", tag, value); in eprimer3_send_string()
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H A Dprimers.c619 (void) ajFmtPrintS(&str, "%s=", tag); in primers_send_range()
624 (void) ajFmtPrintS(&str, "%u,%u ", start, end-start+1); in primers_send_range()
628 (void) ajFmtPrintS(&str, "\n"); in primers_send_range()
691 (void) ajFmtPrintS(&str, "%s=%d\n", tag, value); in primers_send_int()
715 (void) ajFmtPrintS(&str, "%s=%f\n", tag, value); in primers_send_float()
739 (void) ajFmtPrintS(&str, "%s=%d\n", tag, value?1:0); in primers_send_bool()
766 (void) ajFmtPrintS(&str, "%s=%S\n", tag, value); in primers_send_string()
H A Dsirna.c474 ajFmtPrintS(&head2, "CDS region found in feature table " in sirna_begin()
491 ajFmtPrintS(&head2, "%s%s%s%s", in sirna_begin()
500 ajFmtPrintS(&head2, "%s%s%s%d", in sirna_begin()
645 ajFmtPrintS(&tmpStr, "*gc %4.1f", in sirna_output()
667 ajFmtPrintS(&tmpStr, "*forward %S", subseq); in sirna_output()
676 ajFmtPrintS(&tmpStr, "*reverse %S", subseq); in sirna_output()
699 ajFmtPrintS(&desc, "%%GC %4.1f Score %d ", in sirna_output()
H A Ddastest.c287 ajFmtPrintS(&idqry,"dasgff::%S:%S:%S", in main()
301 ajFmtPrintS(&qpath,"%S?segment=%S", in main()
324 ajFmtPrintS(&ffname, "%S.%S", source->uri, in main()
353 ajFmtPrintS(&idqry,"%S:%S:%S", in main()
477 ajFmtPrintS(&ffnamee, "%S.raw.dasgff", ffname); in dastestSaveRawFeatures()
529 ajFmtPrintS(&ffnamee, "%S.mapped.dasgff", ffname); in dastestSaveMappedFeatures()
H A Drestrict.c779 ajFmtPrintS(&tmpStr, "*enzyme %S", m->cod); in restrict_reportHits()
781 ajFmtPrintS(&tmpStr, "*site %S", m->pat); in restrict_reportHits()
783 ajFmtPrintS(&tmpStr, "*5prime %d", m->cut1); in restrict_reportHits()
785 ajFmtPrintS(&tmpStr, "*3prime %d", m->cut2); in restrict_reportHits()
789 ajFmtPrintS(&tmpStr, "*5frag %u", m->len1); in restrict_reportHits()
794 ajFmtPrintS(&tmpStr, "*3frag %u", m->len2); in restrict_reportHits()
802 ajFmtPrintS(&tmpStr, "*5primerev %d", m->cut3); in restrict_reportHits()
804 ajFmtPrintS(&tmpStr, "*3primerev %d", m->cut4); in restrict_reportHits()
808 ajFmtPrintS(&tmpStr, "*5fragrev %u", m->len3); in restrict_reportHits()
813 ajFmtPrintS(&tmpStr, "*3fragrev %u", m->len4); in restrict_reportHits()
H A Ddan.c448 ajFmtPrintS(&tmpStr, "*tm %4.1f", ta[*np]); in dan_reportgc()
450 ajFmtPrintS(&tmpStr, "*gc %4.1f", cga[*np]); in dan_reportgc()
454 ajFmtPrintS (&tmpStr, "*dg %.3f", DeltaG); in dan_reportgc()
456 ajFmtPrintS (&tmpStr, "*dh %.3f", DeltaH); in dan_reportgc()
458 ajFmtPrintS (&tmpStr, "*ds %.3f", DeltaS); in dan_reportgc()
472 ajFmtPrintS (&tmpStr, "*tmprod %4.1f", tpa[*np]); in dan_reportgc()
H A Dcharge.c238 ajFmtPrintS(&st,"Window:%d",window); in charge_addgraph()
242 ajFmtPrintS(&st,"Charge"); in charge_addgraph()
245 ajFmtPrintS(&st,"Position"); in charge_addgraph()
/dports/biology/emboss/EMBOSS-6.6.0/ajax/core/
H A Dajftp.c115 ajFmtPrintS(&portstr,"%d",iport); in ajFtpOpen()
155 ajFmtPrintS(&errstr, "socket connect failed for database '%S': %s", in ajFtpOpen()
258 ajFmtPrintS(&ftpcmd, "USER anonymous\r\n"); in ftpSend()
267 ajFmtPrintS(&ftpcmd, "PASS emboss-bug@emboss.open-bio.org\r\n"); in ftpSend()
277 ajFmtPrintS(&ftpcmd, "TYPE I\r\n"); in ftpSend()
286 ajFmtPrintS(&ftpcmd, "PASV\r\n"); in ftpSend()
295 ajFmtPrintS(&ftpcmd, "SIZE %S\r\n", get); in ftpSend()
312 ajFmtPrintS(&ftpcmd, "REST %Ld\r\n", fpos); in ftpSend()
322 ajFmtPrintS(&ftpcmd, "RETR %S\r\n", get); in ftpSend()
362 ajFmtPrintS(&hoststr, "%u.%u.%u.%u", ia, ib, ic, id); in ftpSend()
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H A Dajhttp.c294 ajFmtPrintS(&portstr,"%d",iport); in ajHttpOpen()
334 ajFmtPrintS(&errstr, "socket connect failed for database '%S': %s", in ajHttpOpen()
398 ajFmtPrintS(&portstr,"%d",proxyport); in ajHttpOpenProxy()
531 ajFmtPrintS(&gethead, "User-Agent: EMBOSS/%S (%S)\r\n", in httpSend()
540 ajFmtPrintS(&gethead, "Host: %S:%d\r\n", host, iport); in httpSend()
553 ajFmtPrintS(&gethead, "Connection: close\r\n"); in httpSend()
567 ajFmtPrintS(&gethead, "\r\n"); in httpSend()
958 ajFmtPrintS(urlget,"/%S",uo->Absolute); in ajHttpQueryUrl()
996 ajFmtPrintS(urlget,"/%S",uo->Absolute); in ajHttpUrlDeconstruct()
1200 ajFmtPrintS(&get, "GET http://%S:%d%S HTTP/%S\r\n", in ajHttpReadPos()
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H A Dajseqtype.c2031 ajFmtPrintS(&seqtypeCharsetAnyGap, "%s%s%s%s%s%s", in seqTypeStrAnyGap()
2060 ajFmtPrintS(&seqtypeCharsetDnaGap, "%s%s%s", in seqTypeStrDnaGap()
2086 ajFmtPrintS(&seqtypeCharsetNuc, "%s%s", in seqTypeStrNuc()
2111 ajFmtPrintS(&seqtypeCharsetNucGap, "%s%s%s", in seqTypeStrNucGap()
2137 ajFmtPrintS(&seqtypeCharsetNucGapPhylo, "%s%s%s%s", in seqTypeStrNucGapPhylo()
2164 ajFmtPrintS(&seqtypeCharsetNucPure, "%s", in seqTypeStrNucPure()
2188 ajFmtPrintS(&seqtypeCharsetProt, "%s%s", in seqTypeStrProt()
2213 ajFmtPrintS(&seqtypeCharsetProtAny, "%s%s%s%s%s", in seqTypeStrProtAny()
2241 ajFmtPrintS(&seqtypeCharsetProtGap, "%s%s%s", in seqTypeStrProtGap()
2295 ajFmtPrintS(&seqtypeCharsetProtPure, "%s", in seqTypeStrProtPure()
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H A Dajfeatwrite.c2256 ajFmtPrintS(&pos,"%d",gf->Start); in ajFeattableWritePir()
3371 ajFmtPrintS(&featoutStr, "/%S", tmptag); in featDumpEmbl()
3538 ajFmtPrintS(&featoutStr, "/%S", tmptag); in featDumpRefseq()
3701 ajFmtPrintS(&featoutStr, "/%S", tmptag); in featDumpRefseqp()
3946 ajFmtPrintS(&fromstr, "?"); in featDumpSwiss()
3949 ajFmtPrintS(&fromstr, "<%d", thys->Start); in featDumpSwiss()
3951 ajFmtPrintS(&fromstr, "%d", thys->Start); in featDumpSwiss()
3957 ajFmtPrintS(&tostr, "?%d", thys->End); in featDumpSwiss()
3959 ajFmtPrintS(&tostr, "?"); in featDumpSwiss()
3962 ajFmtPrintS(&tostr, ">%d", thys->End); in featDumpSwiss()
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H A Dajpat.c166 ajFmtPrintS(&pthis->Name, "pattern%Lu", in ajPatternSeqNewList()
209 ajFmtPrintS(&pthis->Name, "regex%Lu", in ajPatternRegexNewList()
804 ajFmtPrintS(&name, "%S%u", namestr, npat); in ajPatlistSeqRead()
949 ajFmtPrintS(&name, "%S%u", namestr, npat); in ajPatlistRegexRead()
977 ajFmtPrintS(&name, "%S%u", namestr, npat); in ajPatlistRegexRead()
1448 ajFmtPrintS(Pdoc, "%-12S %S\n", "Pattern_name", "Pattern"); in ajPatlistRegexDoc()
1477 ajFmtPrintS(Pdoc, "%-12s %8s %s\n", in ajPatlistSeqDoc()
/dports/biology/emboss/EMBOSS-6.6.0/nucleus/
H A Dembdbi.c506 ajFmtPrintS(&name, "%S%S", dbiDirFix, s2); in embDbiFileList()
602 ajFmtPrintS(&name, "%S%S", dbiDirFix, dbiInFname); in embDbiFileListExc()
688 ajFmtPrintS(&dbiCmdStr, "%S.%s", dbname, ext); in embDbiRmFile()
712 ajFmtPrintS (&filestr, "%S.%s", dbname, ext); in embDbiRmFile()
857 ajFmtPrintS(&dbiCmdStr, "%S -o %S %S %S", in embDbiSortFile()
860 ajFmtPrintS(&dbiCmdStr, "%S -o %S %S", in embDbiSortFile()
883 ajFmtPrintS(&dbiSortExt, "%s.srt", ext1); in embDbiSortFile()
929 ajFmtPrintS(&dbiInFname, "%S.%s", dbname, ext1); in embDbiSortFile()
930 ajFmtPrintS(&dbiOutFname, "%S.%s", dbname, ext2); in embDbiSortFile()
931 ajFmtPrintS(&dbiCmdStr, "%S -o %S %S %S", in embDbiSortFile()
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/dports/biology/emboss/EMBOSS-6.6.0/ajax/ajaxdb/
H A Dajmart.c1053 ajFmtPrintS(&get, "%S?type=registry\r\n", mq->Regpath); in ajMartGetRegistry()
1243 ajFmtPrintS(&get, "%S?type=datasets&mart=%S", path, spmart); in ajMartGetDatasets()
2646 ajFmtPrintS(&filterval,"%S",nameval); in ajMartFilterMatch()
2906 ajFmtPrintS(&get, "%S?query=%S", mq->Martpath, mq->Query); in ajMartSendQuery()
3770 ajFmtPrintS(&pushstr,"\"%s\" excluded = \"0\"",p); in ajMartParseParameters()
4259 ajFmtPrintS(&get, "%S?type=configuration&dataset=%S" in ajMartGetConfiguration()
4682 ajFmtPrintS(str,"%S+%S+%u",ho,pa,port); in martEncodeHname()
4788 ajFmtPrintS(&dir,"%S%c%S",mq->Cachedir,SLASH_CHAR, in martWriteCacheEntry()
4805 ajFmtPrintS(&fname,"%S%cRegistry",dir,SLASH_CHAR); in martWriteCacheEntry()
4835 ajFmtPrintS(&dir,"%S%c%S",mq->Cachedir,SLASH_CHAR, in martWriteCacheEntry()
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