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Searched refs:ajListIterNewread (Results 1 – 25 of 105) sorted by relevance

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/dports/biology/emboss/EMBOSS-6.6.0/ajax/core/
H A Dajvarwrite.c227 iter = ajListIterNewread(varheader->Header); in varoutWriteVcf40()
238 iter = ajListIterNewread(varheader->Fields); in varoutWriteVcf40()
252 iter = ajListIterNewread(varheader->Filters); in varoutWriteVcf40()
263 iter = ajListIterNewread(varheader->Alts); in varoutWriteVcf40()
338 iter = ajListIterNewread(var->Data); in varoutWriteVcf40()
519 iter = ajListIterNewread(var->Data); in varoutWriteNextVcf40()
721 iter = ajListIterNewread(var->Data); in varoutWriteBcf()
1005 iter = ajListIterNewread(var->Data); in varoutWriteNextBcf()
1305 iter = ajListIterNewread(varheader->Alts); in varoutWriteVcf41()
1380 iter = ajListIterNewread(var->Data); in varoutWriteVcf41()
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H A Dajresource.c261 iter = ajListIterNewread(thys->Taxon); in ajResourceDel()
270 iter = ajListIterNewread(thys->Edamdat); in ajResourceDel()
279 iter = ajListIterNewread(thys->Edamfmt); in ajResourceDel()
288 iter = ajListIterNewread(thys->Edamid); in ajResourceDel()
297 iter = ajListIterNewread(thys->Edamtpc); in ajResourceDel()
306 iter = ajListIterNewread(thys->Xref); in ajResourceDel()
315 iter = ajListIterNewread(thys->Query); in ajResourceDel()
806 iter = ajListIterNewread(thys->Cat); in ajResourceTrace()
1112 iter = ajListIterNewread(src); in ajReslinklistClone()
1319 iter = ajListIterNewread(src); in ajResquerylistClone()
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H A Dajassemwrite.c289 j = ajListIterNewread(c->Tags); in assemoutWriteBam()
307 j = ajListIterNewread(assem->Reads); in assemoutWriteBam()
473 j = ajListIterNewread(assem->Reads); in assemoutWriteNextBam()
661 l = ajListIterNewread(r->Tags); in assemoutWriteBamAlignment()
761 j = ajListIterNewread(c->Tags); in assemoutWriteMaf()
818 k = ajListIterNewread(r->Tags); in assemoutWriteMaf()
955 k = ajListIterNewread(r->Tags); in assemoutWriteNextMaf()
1141 j = ajListIterNewread(c->Tags); in assemoutWriteSam()
1156 j = ajListIterNewread(assem->Reads); in assemoutWriteSam()
1266 j = ajListIterNewread(assem->Reads); in assemoutWriteNextSam()
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H A Dajseqwrite.c3834 it = ajListIterNewread(outseq->Acclist); in seqWriteExperiment()
3875 it = ajListIterNewread(outseq->Keylist); in seqWriteExperiment()
3910 it = ajListIterNewread(outseq->Taxlist); in seqWriteExperiment()
4028 it = ajListIterNewread(outseq->Acclist); in seqWriteEmbl()
4079 it = ajListIterNewread(outseq->Keylist); in seqWriteEmbl()
4120 it = ajListIterNewread(outseq->Taxlist); in seqWriteEmbl()
4259 it = ajListIterNewread(outseq->Acclist); in seqWriteEmblnew()
4335 it = ajListIterNewread(outseq->Keylist); in seqWriteEmblnew()
4376 it = ajListIterNewread(outseq->Taxlist); in seqWriteEmblnew()
4415 it = ajListIterNewread(outseq->Reflist); in seqWriteEmblnew()
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H A Dajtextwrite.c173 iter = ajListIterNewread(text->Lines); in textoutWriteHtml()
205 iter = ajListIterNewread(text->Lines); in textoutWriteJson()
266 iter = ajListIterNewread(text->Lines); in textoutWriteText()
301 iter = ajListIterNewread(text->Lines); in textoutWriteXml()
H A Dajfeatwrite.c1098 iter = ajListIterNewread(Feattab->Features); in ajFeattableWriteGff2()
1165 iter = ajListIterNewread(Feattab->Features); in ajFeattableWriteGff3()
1231 iter = ajListIterNewread(Feattab->Features); in ajFeattableWriteBed()
1640 iter = ajListIterNewread(thys->Features); in feattableWriteEmbl()
1705 iter = ajListIterNewread(thys->Features); in feattableWriteRefseq()
2092 iter = ajListIterNewread(thys->Features); in feattableWriteRefseqp()
2376 iter = ajListIterNewread(thys->Features); in ajFeattableWriteDasgff()
3320 iter = ajListIterNewread(feat->GffTags); in featDumpEmbl()
3362 iter = ajListIterNewread(feat->Tags); in featDumpEmbl()
3529 iter = ajListIterNewread(feat->Tags); in featDumpRefseq()
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H A Dajreport.c551 iterft = ajListIterNewread(ftable->Features); in reportWriteDbMotif()
707 iterft = ajListIterNewread(ftable->Features); in reportWriteDiffseq()
892 iterft = ajListIterNewread(ftable->Features); in reportWriteDraw()
1007 iterft = ajListIterNewread(ftable->Features); in reportWriteRestrict()
1041 iterft = ajListIterNewread(ftable->Features); in reportWriteRestrict()
1157 iterft = ajListIterNewread(ftable->Features); in reportWriteExcel()
1266 iterft = ajListIterNewread(ftable->Features); in reportWriteFeatTable()
1365 iterft = ajListIterNewread(ftable->Features); in reportWriteListFile()
1518 iterft = ajListIterNewread(ftable->Features); in reportWriteMotif()
2619 iterft = ajListIterNewread(ftable->Features); in reportWriteTagseq()
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H A Dajtaxwrite.c180 iter = ajListIterNewread(tax->Namelist); in taxoutWriteEbi()
268 iter = ajListIterNewread(tax->Namelist); in taxoutWriteNcbi()
320 iter = ajListIterNewread(tax->Namelist); in taxoutWriteTax()
H A Dajobowrite.c240 iter = ajListIterNewread(obo->Taglist); in oboWriteHtml()
326 iter = ajListIterNewread(obo->Taglist); in oboWriteJson()
475 iter = ajListIterNewread(obo->Taglist); in oboWriteObo()
600 iter = ajListIterNewread(obo->Taglist); in oboWriteXml()
/dports/biology/emboss/EMBOSS-6.6.0/emboss/
H A Dservertell.c157 iter = ajListIterNewread(list); in main()
186 dbiter = ajListIterNewread(dblist); in main()
193 iter = ajListIterNewread(list); in main()
217 aliter = ajListIterNewread(aliaslist); in main()
228 aliter = ajListIterNewread(aliaslist); in main()
H A Ddbtell.c142 iter = ajListIterNewread(list); in main()
167 aliter = ajListIterNewread(aliaslist); in main()
178 aliter = ajListIterNewread(aliaslist); in main()
H A Dprimersearch.c339 lIter = ajListIterNewread(primdata->hitlist); in primersearch_free_primer()
376 lIter = ajListIterNewread(*hlist); in primersearch_clean_hitlist()
556 listIter = ajListIterNewread(primerList); in primersearch_primer_search()
736 fi = ajListIterNewread(fhits); in primersearch_store_hits()
744 ri = ajListIterNewread(rhits); in primersearch_store_hits()
820 lIter = ajListIterNewread(primerList); in primersearch_print_hits()
824 AjIList hIter = ajListIterNewread(primer->hitlist); in primersearch_print_hits()
H A Dshowdb.c256 iter = ajListIterNewread(dbnames); in main()
306 iter = ajListIterNewread(dbnames); in main()
350 iter = ajListIterNewread(dbnames); in main()
397 iter = ajListIterNewread(dbnames); in main()
441 iter = ajListIterNewread(dbnames); in main()
487 iter = ajListIterNewread(dbnames); in main()
531 iter = ajListIterNewread(dbnames); in main()
575 iter = ajListIterNewread(dbnames); in main()
619 iter = ajListIterNewread(dbnames); in main()
663 iter = ajListIterNewread(dbnames); in main()
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H A Dvectorstrip.c206 AjIList iter=ajListIterNewread(vectorlist); in main()
399 iter = ajListIterNewread(*list); in vectorstrip_free_list()
554 iter = ajListIterNewread(fivelist); in vectorstrip_process_hits()
565 iter = ajListIterNewread(threelist); in vectorstrip_process_hits()
988 iter = ajListIterNewread(hitlist); in vectorstrip_print_hits()
H A Dsplitsource.c76 iter = ajListIterNewread(old_feattable->Features); in main()
268 iter = ajListIterNewread(old_feattable->Features); in splitsource_AddSubSeqFeat()
H A Densembltest.c232 iterator = ajListIterNewread(svrnames); in main()
1503 iterator = ajListIterNewread(features); in ensembltest_feature()
2295 iter1 = ajListIterNewread(ots); in ensembltest_operon()
2320 iter2 = ajListIterNewread(genes); in ensembltest_operon()
3171 iterator = ajListIterNewread(mappath); in ensembltest_coordinate_system()
3203 iterator = ajListIterNewread(mappath); in ensembltest_coordinate_system()
3235 iterator = ajListIterNewread(mappath); in ensembltest_coordinate_system()
3329 iterator = ajListIterNewread(attributes); in ensembltest_sequence_region()
3579 iterator = ajListIterNewread(exons); in ensembltest_transcript()
4218 iter = ajListIterNewread(list); in ensembltest_miscellaneous()
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/dports/biology/emboss/EMBOSS-6.6.0/nucleus/
H A Dembdata.c70 iter = ajListIterNewread(*data); in embDataListDel()
213 iter = ajListIterNewread(data); in embDataListRead()
274 iter = ajListIterNewread(fullList); in embDataListGetTables()
322 iter = ajListIterNewread(fullList); in embDataListGetTable()
H A Dembgroup.c1362 aiter = ajListIterNewread(alpha); in grpAddGroupsToList()
1371 iter = ajListIterNewread(groups); in grpAddGroupsToList()
1380 giter = ajListIterNewread(glist); in grpAddGroupsToList()
1395 niter = ajListIterNewread(nlist); in grpAddGroupsToList()
2210 piter = ajListIterNewread(gl->progs); in embGrpKeySearchProgs()
2450 piter = ajListIterNewread(gl->progs); in embGrpSearchProgsEdam()
2619 giter = ajListIterNewread(alpha); in embGrpKeySearchSeeAlso()
2623 piter = ajListIterNewread(gl->progs); in embGrpKeySearchSeeAlso()
2647 giter = ajListIterNewread(glist); in embGrpKeySearchSeeAlso()
2652 griter = ajListIterNewread(*appgroups); in embGrpKeySearchSeeAlso()
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H A Dembpdb.c291 iter=ajListIterNewread(list_allscop); in embPdbidToScop()
527 iter=ajListIterNewread(pdb->Chains[chn-1]->Residues); in embPdbToIdx()
665 iter=ajListIterNewread(pdb->Chains[i]->Atoms); in embPdbListHeterogens()
776 iter=ajListIterNewread(pdb->Chains[chn-1]->Residues); in embPdbResidueIndexI()
904 iter=ajListIterNewread(pdb->Chains[chn-1]->Atoms); in embPdbResidueIndexICA()
H A Dembshow.c282 iter = ajListIterNewread(thys->list); in embShowDel()
970 liter = ajListIterNewread(lines); in embShowPrint()
1016 liter = ajListIterNewread(lines); in showPrintLines()
1072 diter = ajListIterNewread(thys->list); in showFillLines()
2201 miter = ajListIterNewread(info->matches); in showFillREupright()
2241 siter = ajListIterNewread(info->sitelist); in showFillREupright()
2331 liter = ajListIterNewread(linelist); in showFillREupright()
2441 miter = ajListIterNewread(info->matches); in showFillREflat()
2849 liter = ajListIterNewread(linelist); in showFillREflat()
3112 liter = ajListIterNewread(linelist); in showFillFT()
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/dports/biology/emboss/EMBOSS-6.6.0/ajax/ensembl/
H A Densoperon.c1385 iter = ajListIterNewread(operon->Attributes); in ensOperonTrace()
1527 iter = ajListIterNewread(operon->Attributes); in ensOperonCalculateMemsize()
1782 iter = ajListIterNewread(list); in ensOperonFetchAllAttributes()
1855 iter = ajListIterNewread(list); in ensOperonFetchAllDatabaseentries()
4043 iter = ajListIterNewread(ot->Attributes); in ensOperontranscriptTrace()
4062 iter = ajListIterNewread(ot->Databaseentries); in ensOperontranscriptTrace()
4081 iter = ajListIterNewread(ot->Genes); in ensOperontranscriptTrace()
4186 iter = ajListIterNewread(ot->Attributes); in ensOperontranscriptCalculateMemsize()
4222 iter = ajListIterNewread(ot->Genes); in ensOperontranscriptCalculateMemsize()
4447 iter = ajListIterNewread(list); in ensOperontranscriptFetchAllAttributes()
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H A Densgene.c2158 iter = ajListIterNewread(gene->Attributes); in ensGeneTrace()
2281 iter = ajListIterNewread(list); in ensGeneCalculateCoordinates()
2314 iter = ajListIterNewread(list); in ensGeneCalculateCoordinates()
2590 iter = ajListIterNewread(list); in ensGeneFetchAllAttributes()
2656 iter = ajListIterNewread(list); in ensGeneFetchAllDatabaseentries()
2810 titer = ajListIterNewread(tlist); in ensGeneFetchAllExons()
2818 eiter = ajListIterNewread(elist); in ensGeneFetchAllExons()
3009 iter1 = ajListIterNewread(transcripts1); in ensGeneSimilarity()
3010 iter2 = ajListIterNewread(transcripts2); in ensGeneSimilarity()
3215 iter = ajListIterNewread(transcripts); in ensGeneTransform()
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H A Denstranslation.c1962 iter = ajListIterNewread(translation->Attributes); in ensTranslationTrace()
1981 iter = ajListIterNewread(translation->Databaseentries); in ensTranslationTrace()
2000 iter = ajListIterNewread(translation->Proteinfeatures); in ensTranslationTrace()
2124 iter = ajListIterNewread(translation->Attributes); in ensTranslationCalculateMemsize()
2500 iter = ajListIterNewread(list); in ensTranslationFetchAllAttributes()
2569 iter = ajListIterNewread(list); in ensTranslationFetchAllDatabaseentries()
2703 iter = ajListIterNewread(list); in ensTranslationFetchAllProteinfeatures()
3131 iter = ajListIterNewread(exons); in translationadaptorFetchAllbyStatement()
3718 iter = ajListIterNewread(exons); in ensTranslationadaptorFetchAllbyTranscript()
3917 iter = ajListIterNewread(exons); in translationadaptorFetchAllbyIdentifiers()
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H A Denstranscript.c3606 iter = ajListIterNewread(list); in ensTranscriptCalculateCoordinates()
3636 iter = ajListIterNewread(list); in ensTranscriptCalculateCoordinates()
3727 iter = ajListIterNewread(exons); in ensTranscriptCalculateLength()
4187 iter = ajListIterNewread(exons); in ensTranscriptCalculateTranscriptCodingEnd()
4317 iter = ajListIterNewread(exons); in ensTranscriptCalculateTranscriptCodingStart()
5032 iter = ajListIterNewread(list); in ensTranscriptFetchAllAttributes()
5094 iter = ajListIterNewread(list); in ensTranscriptFetchAllConstitutiveexons()
5156 iter = ajListIterNewread(list); in ensTranscriptFetchAllDatabaseentries()
5750 iter = ajListIterNewread(exons); in ensTranscriptFetchSequenceTranscriptStr()
6341 iter = ajListIterNewread(exons); in ensTranscriptMapperInit()
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/dports/biology/emboss/EMBOSS-6.6.0/ajax/ajaxdb/
H A Dajtaxdb.c634 iter = ajListIterNewread(qry->QueryFields); in taxEmbossQryOpen()
754 iter= ajListIterNewread(fdlist); in taxEmbossQryEntry()
755 icache = ajListIterNewread(cachelist); in taxEmbossQryEntry()
1028 iter = ajListIterNewread(fdlist); in taxEmbossQryQuery()
1029 icache = ajListIterNewread(cachelist); in taxEmbossQryQuery()

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