| /dports/biology/emboss/EMBOSS-6.6.0/ajax/core/ |
| H A D | ajvar.c | 373 ajStrSetClear(&var->Id); in ajVarClear()
376 ajStrSetClear(&var->Db); in ajVarClear()
382 ajStrSetClear(&var->Full); in ajVarClear()
385 ajStrSetClear(&var->Qry); in ajVarClear()
589 ajStrSetClear(&var->Id); in ajVardataClear()
592 ajStrSetClear(&var->Ref); in ajVardataClear()
595 ajStrSetClear(&var->Alt); in ajVardataClear()
598 ajStrSetClear(&var->Qual); in ajVardataClear()
604 ajStrSetClear(&var->Info); in ajVardataClear()
758 ajStrSetClear(&var->Id); in ajVarfieldClear()
[all …]
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| H A D | ajtext.c | 319 ajStrSetClear(&text->Id); in ajTextClear()
322 ajStrSetClear(&text->Db); in ajTextClear()
325 ajStrSetClear(&text->Setdb); in ajTextClear()
328 ajStrSetClear(&text->Full); in ajTextClear()
331 ajStrSetClear(&text->Qry); in ajTextClear()
334 ajStrSetClear(&text->Formatstr); in ajTextClear()
337 ajStrSetClear(&text->Filename); in ajTextClear()
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| H A D | ajurl.c | 358 ajStrSetClear(&url->Id); in ajUrlClear()
361 ajStrSetClear(&url->Db); in ajUrlClear()
364 ajStrSetClear(&url->Setdb); in ajUrlClear()
367 ajStrSetClear(&url->Full); in ajUrlClear()
370 ajStrSetClear(&url->Qry); in ajUrlClear()
373 ajStrSetClear(&url->Formatstr); in ajUrlClear()
376 ajStrSetClear(&url->Filename); in ajUrlClear()
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| H A D | ajxml.c | 370 ajStrSetClear(&xml->Id); in ajXmlClear()
373 ajStrSetClear(&xml->Db); in ajXmlClear()
376 ajStrSetClear(&xml->Setdb); in ajXmlClear()
379 ajStrSetClear(&xml->Full); in ajXmlClear()
382 ajStrSetClear(&xml->Qry); in ajXmlClear()
385 ajStrSetClear(&xml->Formatstr); in ajXmlClear()
388 ajStrSetClear(&xml->Filename); in ajXmlClear()
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| H A D | ajrefseq.c | 352 ajStrSetClear(&refseq->Id); in ajRefseqClear()
355 ajStrSetClear(&refseq->Db); in ajRefseqClear()
358 ajStrSetClear(&refseq->Setdb); in ajRefseqClear()
361 ajStrSetClear(&refseq->Full); in ajRefseqClear()
364 ajStrSetClear(&refseq->Qry); in ajRefseqClear()
367 ajStrSetClear(&refseq->Formatstr); in ajRefseqClear()
370 ajStrSetClear(&refseq->Filename); in ajRefseqClear()
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| H A D | ajobo.c | 783 ajStrSetClear(&obo->Id); in ajOboClear()
785 ajStrSetClear(&obo->Trueid); in ajOboClear()
787 ajStrSetClear(&obo->Fullid); in ajOboClear()
789 ajStrSetClear(&obo->Name); in ajOboClear()
793 ajStrSetClear(&obo->Def); in ajOboClear()
795 ajStrSetClear(&obo->Comment); in ajOboClear()
800 ajStrSetClear(&obo->Db); in ajOboClear()
802 ajStrSetClear(&obo->Setdb); in ajOboClear()
804 ajStrSetClear(&obo->Full); in ajOboClear()
806 ajStrSetClear(&obo->Qry); in ajOboClear()
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| H A D | ajtax.c | 621 ajStrSetClear(&tax->Id); in ajTaxClear()
624 ajStrSetClear(&tax->Db); in ajTaxClear()
627 ajStrSetClear(&tax->Setdb); in ajTaxClear()
630 ajStrSetClear(&tax->Full); in ajTaxClear()
633 ajStrSetClear(&tax->Qry); in ajTaxClear()
636 ajStrSetClear(&tax->Formatstr); in ajTaxClear()
639 ajStrSetClear(&tax->Filename); in ajTaxClear()
642 ajStrSetClear(&tax->Name); in ajTaxClear()
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| H A D | ajresource.c | 645 ajStrSetClear(&resource->Id); in ajResourceClear()
652 ajStrSetClear(&resource->Acc); in ajResourceClear()
655 ajStrSetClear(&resource->Name); in ajResourceClear()
658 ajStrSetClear(&resource->Desc); in ajResourceClear()
661 ajStrSetClear(&resource->Url); in ajResourceClear()
664 ajStrSetClear(&resource->Urllink); in ajResourceClear()
667 ajStrSetClear(&resource->Urlrest); in ajResourceClear()
709 ajStrSetClear(&resource->Db); in ajResourceClear()
712 ajStrSetClear(&resource->Setdb); in ajResourceClear()
715 ajStrSetClear(&resource->Full); in ajResourceClear()
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| H A D | ajquery.c | 1047 ajStrSetClear(&thys->SvrName); in ajQueryClear()
1048 ajStrSetClear(&thys->DbName); in ajQueryClear()
1049 ajStrSetClear(&thys->DbAlias); in ajQueryClear()
1050 ajStrSetClear(&thys->DbType); in ajQueryClear()
1059 ajStrSetClear(&thys->Method); in ajQueryClear()
1060 ajStrSetClear(&thys->Qlinks); in ajQueryClear()
1062 ajStrSetClear(&thys->IndexDir); in ajQueryClear()
1064 ajStrSetClear(&thys->Filename); in ajQueryClear()
1065 ajStrSetClear(&thys->Exclude); in ajQueryClear()
1069 ajStrSetClear(&thys->DbUrl); in ajQueryClear()
[all …]
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| H A D | ajassem.c | 450 ajStrSetClear(&assem->Id); in ajAssemClear()
453 ajStrSetClear(&assem->Db); in ajAssemClear()
456 ajStrSetClear(&assem->Setdb); in ajAssemClear()
459 ajStrSetClear(&assem->Full); in ajAssemClear()
462 ajStrSetClear(&assem->Qry); in ajAssemClear()
465 ajStrSetClear(&assem->Formatstr); in ajAssemClear()
468 ajStrSetClear(&assem->Filename); in ajAssemClear()
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| H A D | ajpat.c | 806 ajStrSetClear(&pat); in ajPatlistSeqRead()
822 ajStrSetClear(&name); in ajPatlistSeqRead()
823 ajStrSetClear(&pat); in ajPatlistSeqRead()
951 ajStrSetClear(&pat); in ajPatlistRegexRead()
970 ajStrSetClear(&name); in ajPatlistRegexRead()
971 ajStrSetClear(&pat); in ajPatlistRegexRead()
985 ajStrSetClear(&pat); in ajPatlistRegexRead()
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| H A D | ajpdb.c | 3942 ajStrSetClear(OEnv); in ajResidueEnv2()
4078 ajStrSetClear(OEnv); in ajResidueEnv3()
4214 ajStrSetClear(OEnv); in ajResidueEnv4()
4295 ajStrSetClear(OEnv); in ajResidueEnv5()
4455 ajStrSetClear(OEnv); in ajResidueEnv6()
4611 ajStrSetClear(OEnv); in ajResidueEnv7()
4741 ajStrSetClear(OEnv); in ajResidueEnv8()
4824 ajStrSetClear(OEnv); in ajResidueEnv9()
4903 ajStrSetClear(OEnv); in ajResidueEnv10()
5063 ajStrSetClear(OEnv); in ajResidueEnv11()
[all …]
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| H A D | ajseq.c | 1688 ajStrSetClear(&seq->Acc); in ajSeqClear()
1690 ajStrSetClear(&seq->Sv); in ajSeqClear()
1692 ajStrSetClear(&seq->Gi); in ajSeqClear()
1694 ajStrSetClear(&seq->Tax); in ajSeqClear()
1712 ajStrSetClear(&seq->Db); in ajSeqClear()
1718 ajStrSetClear(&seq->Doc); in ajSeqClear()
1720 ajStrSetClear(&seq->Usa); in ajSeqClear()
1722 ajStrSetClear(&seq->Ufo); in ajSeqClear()
1733 ajStrSetClear(&seq->Seq); in ajSeqClear()
7909 ajStrSetClear(&desc->Name); in ajSeqdescClear()
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| H A D | ajdmx.c | 1692 ajStrSetClear(&scophit->Acc); in ajDmxScophitReadFasta()
1699 ajStrSetClear(&scophit->Spr); in ajDmxScophitReadFasta()
1723 ajStrSetClear(&scophit->Dom); in ajDmxScophitReadFasta()
1733 ajStrSetClear(&scophit->Class); in ajDmxScophitReadFasta()
1739 ajStrSetClear(&scophit->Architecture); in ajDmxScophitReadFasta()
1744 ajStrSetClear(&scophit->Topology); in ajDmxScophitReadFasta()
1750 ajStrSetClear(&scophit->Fold); in ajDmxScophitReadFasta()
1756 ajStrSetClear(&scophit->Superfamily); in ajDmxScophitReadFasta()
1762 ajStrSetClear(&scophit->Family); in ajDmxScophitReadFasta()
1768 ajStrSetClear(&scophit->Model); in ajDmxScophitReadFasta()
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| H A D | ajseqwrite.c | 8860 ajStrSetClear(&seqout->Acc); in ajSeqoutClear()
8861 ajStrSetClear(&seqout->Sv); in ajSeqoutClear()
8862 ajStrSetClear(&seqout->Gi); in ajSeqoutClear()
8863 ajStrSetClear(&seqout->Tax); in ajSeqoutClear()
8871 ajStrSetClear(&seqout->Doc); in ajSeqoutClear()
8872 ajStrSetClear(&seqout->Usa); in ajSeqoutClear()
8873 ajStrSetClear(&seqout->Ufo); in ajSeqoutClear()
8880 ajStrSetClear(&seqout->Seq); in ajSeqoutClear()
9202 ajStrSetClear(&seqout->Acc); in ajSeqoutReset()
9203 ajStrSetClear(&seqout->Sv); in ajSeqoutReset()
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| H A D | ajtextread.c | 515 ajStrSetClear(&thys->Db); in ajTextinClear()
516 ajStrSetClear(&thys->Qry); in ajTextinClear()
517 ajStrSetClear(&thys->Formatstr); in ajTextinClear()
518 ajStrSetClear(&thys->QryFields); in ajTextinClear()
519 ajStrSetClear(&thys->Filename); in ajTextinClear()
627 ajStrSetClear(&thys->Db); in ajTextinClearNofile()
628 ajStrSetClear(&thys->Qry); in ajTextinClearNofile()
629 ajStrSetClear(&thys->Formatstr); in ajTextinClearNofile()
630 ajStrSetClear(&thys->QryFields); in ajTextinClearNofile()
631 ajStrSetClear(&thys->Filename); in ajTextinClearNofile()
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| H A D | ajfeatwrite.c | 642 ajStrSetClear(&pthis->Ufo); in ajFeattabOutClear()
646 ajStrSetClear(&pthis->Seqid); in ajFeattabOutClear()
647 ajStrSetClear(&pthis->Type); in ajFeattabOutClear()
1401 ajStrSetClear(&temp); in featWriteEmbl()
1402 ajStrSetClear(&pos); in featWriteEmbl()
1735 ajStrSetClear(&location); in feattableWriteRefseq()
1770 ajStrSetClear(&temp); in feattableWriteRefseq()
1771 ajStrSetClear(&pos); in feattableWriteRefseq()
1836 ajStrSetClear(&pos); in feattableWriteRefseq()
1935 ajStrSetClear(&temp); in featWriteRefseqp()
[all …]
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| /dports/biology/emboss/EMBOSS-6.6.0/emboss/ |
| H A D | showfeat.c | 359 ajStrSetClear(&tagstmp); in showfeat_ShowFeatSeq()
407 ajStrSetClear(&lineout); in showfeat_ShowFeatSeq()
412 ajStrSetClear(&tagsout); in showfeat_ShowFeatSeq()
413 ajStrSetClear(&posout); in showfeat_ShowFeatSeq()
456 ajStrSetClear(&tagstmp); in showfeat_ShowFeatSeq()
512 ajStrSetClear(&posout); in showfeat_ShowFeatSeq()
520 ajStrSetClear(&tagstmp); in showfeat_ShowFeatSeq()
568 ajStrSetClear(&lineout); in showfeat_ShowFeatSeq()
573 ajStrSetClear(&tagsout); in showfeat_ShowFeatSeq()
574 ajStrSetClear(&posout); in showfeat_ShowFeatSeq()
[all …]
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| H A D | notseq.c | 72 ajStrSetClear(&name); in main()
73 ajStrSetClear(&acc); in main()
129 ajStrSetClear(pattern); in notseq_readfile()
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| H A D | getorf.c | 322 ajStrSetClear(&newstr[frame]); in getorf_FindORFs()
363 ajStrSetClear(&newstr[frame]); in getorf_FindORFs()
404 ajStrSetClear(&newstr[frame]); in getorf_FindORFs()
445 ajStrSetClear(&newstr[frame]); in getorf_FindORFs()
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| H A D | eprimer3.c | 496 ajStrSetClear(&result); in main()
620 ajStrSetClear(&str); in eprimer3_send_range()
629 ajStrSetClear(&str); in eprimer3_send_range()
669 ajStrSetClear(&str); in eprimer3_send_range2()
676 ajStrSetClear(&str); in eprimer3_send_range2()
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| H A D | extractalign.c | 66 ajStrSetClear(&newstr); in main()
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| H A D | eprimer32.c | 515 ajStrSetClear(&result); in main()
643 ajStrSetClear(&str); in eprimer32_send_range()
652 ajStrSetClear(&str); in eprimer32_send_range()
692 ajStrSetClear(&str); in eprimer32_send_range2()
699 ajStrSetClear(&str); in eprimer32_send_range2()
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| H A D | extractseq.c | 119 ajStrSetClear(&newstr); in main()
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| /dports/biology/emboss/EMBOSS-6.6.0/nucleus/ |
| H A D | embdmx.c | 2083 ajStrSetClear(&hit->Acc); in embDmxScophitReadAllFasta()
2090 ajStrSetClear(&hit->Spr); in embDmxScophitReadAllFasta()
2114 ajStrSetClear(&hit->Dom); in embDmxScophitReadAllFasta()
2125 ajStrSetClear(&hit->Class); in embDmxScophitReadAllFasta()
2131 ajStrSetClear(&hit->Architecture); in embDmxScophitReadAllFasta()
2137 ajStrSetClear(&hit->Topology); in embDmxScophitReadAllFasta()
2143 ajStrSetClear(&hit->Fold); in embDmxScophitReadAllFasta()
2149 ajStrSetClear(&hit->Superfamily); in embDmxScophitReadAllFasta()
2155 ajStrSetClear(&hit->Family); in embDmxScophitReadAllFasta()
2161 ajStrSetClear(&hit->Model); in embDmxScophitReadAllFasta()
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