Searched refs:area_taxa (Results 1 – 4 of 4) sorted by relevance
58 area_taxa.resize(getNTaxa(), NULL); in readGenePValues()66 if (area_taxa[id]) outError("Duplicated set name in set file", (*i)->name); in readGenePValues()71 area_taxa[id] = sp; in readGenePValues()74 cout << ntaxa << " genes and " << area_taxa.size() << " gene sets detected" << endl; in readGenePValues()132 for (j = 0; j < area_taxa.size(); j++) in checkZValue()133 if (area_taxa[j]->containTaxon(i)) { in checkZValue()210 for (j = 0; j < area_taxa.size(); j++) in lpGeneConstraint()211 if (area_taxa[j]->containTaxon(i)) in lpGeneConstraint()
946 int nareas = area_taxa.size(); in findMinKArea_LP()1151 if (area_taxa.empty()) { in findPDArea_LP()1156 for (SplitSet::iterator it = area_taxa.begin(); it != area_taxa.end(); it++) in findPDArea_LP()1188 int nareas = area_taxa.size(); in findPDArea_LP()1317 int nareas = area_taxa.size(); in calcPDArea()1321 sp += *area_taxa[i]; in calcPDArea()1462 for (SplitSet::iterator it = area_taxa.begin(); it != area_taxa.end(); it++) { in checkAreaCoverage()1510 int nareas = area_taxa.size(); in lpObjectiveMinK()1553 nvars = area_taxa.size(); in lpK_BudgetConstraint()1796 nvars = area_taxa.size(); in lpVariableBinary()[all …]
253 SplitSet area_taxa; variable
1016 sp += *(sg.area_taxa[i]); in summarizeSplit()