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Searched refs:bcf_get_format_float (Results 1 – 25 of 36) sorted by relevance

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/dports/biology/bcftools/bcftools-1.14/plugins/
H A Dtag2tag.c171 n = bcf_get_format_float(in_hdr,rec,"GP",&farr,&mfarr); in process()
202 n = bcf_get_format_float(in_hdr,rec,"GL",&farr,&mfarr); in process()
224 n = bcf_get_format_float(in_hdr,rec,"GP",&farr,&mfarr); in process()
H A Dguess-ploidy.c290 int ngl = bcf_get_format_float(args->hdr,rec,"GL",&args->farr,&args->nfarr); in process_region_guess()
/dports/biology/bio-mocha/bcftools-1.14/plugins/
H A Dtag2tag.c171 n = bcf_get_format_float(in_hdr,rec,"GP",&farr,&mfarr); in process()
202 n = bcf_get_format_float(in_hdr,rec,"GL",&farr,&mfarr); in process()
224 n = bcf_get_format_float(in_hdr,rec,"GP",&farr,&mfarr); in process()
H A Dscore.c671 number = bcf_get_format_float(hdr, line, "DS", &float_arr, &m_float); in run()
699 number = bcf_get_format_float(hdr, line, "HDS", &float_arr, &m_float); in run()
713 number = bcf_get_format_float(hdr, line, ap_str[ap], &float_arr, &m_float); in run()
742 number = bcf_get_format_float(hdr, line, "GP", &float_arr, &m_float); in run()
H A Dguess-ploidy.c290 int ngl = bcf_get_format_float(args->hdr,rec,"GL",&args->farr,&args->nfarr); in process_region_guess()
/dports/biology/vt/vt-0.57721/
H A Ddecompose2.cpp233 ret = bcf_get_format_float(odr->hdr, v, "GL", &gl, &n); in decompose2()
696 … int32_t ret = bcf_get_format_float(odr->hdr, v, tag, &g, &n); in decompose2()
761 … int32_t ret = bcf_get_format_float(odr->hdr, v, tag, &a, &n); in decompose2()
830 … int32_t ret = bcf_get_format_float(odr->hdr, v, tag, &a, &n); in decompose2()
H A Ddecompose.cpp263 ret = bcf_get_format_float(odr->hdr, v, "GL", &gl, &n); in decompose()
734 … int32_t ret = bcf_get_format_float(odr->hdr, v, tag, &g, &n); in decompose()
799 … int32_t ret = bcf_get_format_float(odr->hdr, v, tag, &a, &n); in decompose()
868 … int32_t ret = bcf_get_format_float(odr->hdr, v, tag, &a, &n); in decompose()
H A Dpaste.cpp281 … int32_t b = bcf_get_format_float(odrs[j]->hdr, vs[j], genotype_field, &p, &np); in paste()
H A Dmerge_genotypes.cpp565 int32_t no_cg = bcf_get_format_float(h, v, "CG", &CG, &no_CG); in merge_genotypes()
H A Dprofile_mendelian.cpp496 int k = bcf_get_format_float(h, v, "CG", &cgs, &n_cg); in profile_mendelian()
/dports/biology/vt/vt-0.57721/lib/htslib/test/
H A Dtest-vcf-api.c357 int ret = bcf_get_format_float(hdr, line, "TF", &values, &count); in check_format_values()
/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/test/
H A Dtest-vcf-api.c356 int ret = bcf_get_format_float(hdr, line, "TF", &values, &count); in check_format_values()
/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/test/
H A Dtest-vcf-api.c446 int ret = bcf_get_format_float(hdr, line, "TF", &values, &count); in check_format_values()
/dports/biology/htslib/htslib-1.14/test/
H A Dtest-vcf-api.c505 int ret = bcf_get_format_float(hdr, line, "TF", &values, &count); in check_format_values()
/dports/biology/vt/vt-0.57721/lib/htslib/htslib/
H A Dvcf.h725 …#define bcf_get_format_float(hdr,line,tag,dst,ndst) bcf_get_format_values(hdr,line,tag,(void**)(d… macro
/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/htslib/
H A Dvcf.h725 …#define bcf_get_format_float(hdr,line,tag,dst,ndst) bcf_get_format_values(hdr,line,tag,(void**)(d… macro
/dports/biology/stacks/stacks-2.4/htslib/htslib/
H A Dvcf.h725 …#define bcf_get_format_float(hdr,line,tag,dst,ndst) bcf_get_format_values(hdr,line,tag,(void**)(d… macro
/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/htslib/
H A Dvcf.h725 …#define bcf_get_format_float(hdr,line,tag,dst,ndst) bcf_get_format_values(hdr,line,tag,(void**)(d… macro
/dports/biology/bcftools/bcftools-1.14/
H A Dpolysomy.c209 if ( bcf_get_format_float(hdr,line,"BAF",&baf,&nbaf) != 1 ) continue; in init_data()
H A Dvcfannotate.c1457 … int i, j, ndst = bcf_get_format_float(args->hdr,line,col->hdr_key_dst,&args->tmpf2,&args->mtmpf2); in core_setter_format_real()
1787 …int nsrc = bcf_get_format_float(args->files->readers[1].header,rec,col->hdr_key_src,&args->tmpf,&a… in vcf_setter_format_real()
1810 int ndst = bcf_get_format_float(args->hdr,line,col->hdr_key_dst,&args->tmpf2,&args->mtmpf2); in vcf_setter_format_real()
/dports/biology/bio-mocha/bcftools-1.14/
H A Dpolysomy.c209 if ( bcf_get_format_float(hdr,line,"BAF",&baf,&nbaf) != 1 ) continue; in init_data()
H A Dvcfannotate.c1457 … int i, j, ndst = bcf_get_format_float(args->hdr,line,col->hdr_key_dst,&args->tmpf2,&args->mtmpf2); in core_setter_format_real()
1787 …int nsrc = bcf_get_format_float(args->files->readers[1].header,rec,col->hdr_key_src,&args->tmpf,&a… in vcf_setter_format_real()
1810 int ndst = bcf_get_format_float(args->hdr,line,col->hdr_key_dst,&args->tmpf2,&args->mtmpf2); in vcf_setter_format_real()
/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/htslib/
H A Dvcf.h1048 …#define bcf_get_format_float(hdr,line,tag,dst,ndst) bcf_get_format_values(hdr,line,tag,(void**)(d… macro
/dports/biology/py-pysam/pysam-0.18.0/htslib/htslib/
H A Dvcf.h1049 …#define bcf_get_format_float(hdr,line,tag,dst,ndst) bcf_get_format_values(hdr,line,tag,(void**)(d… macro
/dports/biology/htslib/htslib-1.14/htslib/
H A Dvcf.h1049 …#define bcf_get_format_float(hdr,line,tag,dst,ndst) bcf_get_format_values(hdr,line,tag,(void**)(d… macro

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