| Name | Date | Size | #Lines | LOC | ||
|---|---|---|---|---|---|---|
| .. | 09-May-2018 | - | ||||
| tabix/ | H | 09-May-2018 | - | 438 | 373 | |
| auxf#values.sam | H A D | 09-May-2018 | 751 | 6 | 5 | |
| auxf.fa | H A D | 09-May-2018 | 29 | 3 | 2 | |
| auxf.fa.fai | H A D | 09-May-2018 | 18 | 2 | 1 | |
| c1#bounds.sam | H A D | 09-May-2018 | 148 | 5 | 4 | |
| c1#clip.sam | H A D | 09-May-2018 | 337 | 9 | 8 | |
| c1#noseq.sam | H A D | 09-May-2018 | 433 | 11 | 10 | |
| c1#pad1.sam | H A D | 09-May-2018 | 388 | 11 | 10 | |
| c1#pad2.sam | H A D | 09-May-2018 | 527 | 15 | 14 | |
| c1#pad3.sam | H A D | 09-May-2018 | 665 | 15 | 14 | |
| c1#unknown.sam | H A D | 09-May-2018 | 429 | 10 | 9 | |
| c1.fa | H A D | 09-May-2018 | 15 | 3 | 2 | |
| c1.fa.fai | H A D | 09-May-2018 | 14 | 2 | 1 | |
| c2#pad.sam | H A D | 09-May-2018 | 847 | 27 | 26 | |
| c2.fa | H A D | 09-May-2018 | 14 | 3 | 2 | |
| c2.fa.fai | H A D | 09-May-2018 | 12 | 2 | 1 | |
| ce#1.sam | H A D | 09-May-2018 | 341 | 3 | 2 | |
| ce#1000.sam | H A D | 09-May-2018 | 315.1 KiB | 1,006 | 1,005 | |
| ce#2.sam | H A D | 09-May-2018 | 645 | 4 | 3 | |
| ce#5.sam | H A D | 09-May-2018 | 1.8 KiB | 12 | 11 | |
| ce#5b.sam | H A D | 09-May-2018 | 1.8 KiB | 13 | 12 | |
| ce#large_seq.sam | H A D | 09-May-2018 | 2 MiB | 4 | 3 | |
| ce#supp.sam | H A D | 09-May-2018 | 547 | 7 | 6 | |
| ce#tag_depadded.sam | H A D | 09-May-2018 | 1.6 KiB | 12 | 11 | |
| ce#tag_padded.sam | H A D | 09-May-2018 | 1.6 KiB | 12 | 11 | |
| ce#unmap.sam | H A D | 09-May-2018 | 1.3 KiB | 7 | 6 | |
| ce#unmap1.sam | H A D | 09-May-2018 | 2.7 KiB | 21 | 20 | |
| ce#unmap2.sam | H A D | 09-May-2018 | 5.4 KiB | 30 | 29 | |
| ce.fa | H A D | 09-May-2018 | 1 MiB | 20,804 | 20,803 | |
| ce.fa.fai | H A D | 09-May-2018 | 230 | 8 | 7 | |
| compare_sam.pl | H A D | 09-May-2018 | 5.6 KiB | 197 | 120 | |
| cross_validate.sh | H A D | 09-May-2018 | 3.1 KiB | 127 | 76 | |
| faidx.fa | H A D | 09-May-2018 | 231 | 18 | 15 | |
| fieldarith.c | H A D | 09-May-2018 | 2.4 KiB | 75 | 40 | |
| fieldarith.sam | H A D | 09-May-2018 | 916 | 16 | 15 | |
| formatcols.vcf | H A D | 09-May-2018 | 240 | 7 | 6 | |
| formatmissing-out.vcf | H A D | 09-May-2018 | 226 | 7 | 6 | |
| formatmissing.vcf | H A D | 09-May-2018 | 226 | 7 | 6 | |
| hfile.c | H A D | 09-May-2018 | 10.4 KiB | 284 | 221 | |
| hts_endian.c | H A D | 09-May-2018 | 17.2 KiB | 511 | 412 | |
| md#1.sam | H A D | 09-May-2018 | 1,017 | 13 | 12 | |
| md.fa | H A D | 09-May-2018 | 45 | 4 | 2 | |
| md.fa.fai | H A D | 09-May-2018 | 13 | 2 | 1 | |
| noroundtrip-out.vcf | H A D | 09-May-2018 | 325 | 10 | 9 | |
| noroundtrip.vcf | H A D | 09-May-2018 | 271 | 9 | 8 | |
| range.out | H A D | 09-May-2018 | 3.4 KiB | 18 | 17 | |
| realn01.fa | H A D | 09-May-2018 | 719 | 14 | 13 | |
| realn01.fa.fai | H A D | 09-May-2018 | 21 | 2 | 1 | |
| realn01.sam | H A D | 09-May-2018 | 1.8 KiB | 9 | 8 | |
| realn01_exp-a.sam | H A D | 09-May-2018 | 2.1 KiB | 9 | 8 | |
| realn01_exp-e.sam | H A D | 09-May-2018 | 2.1 KiB | 9 | 8 | |
| realn01_exp.sam | H A D | 09-May-2018 | 2.1 KiB | 9 | 8 | |
| realn02-r.sam | H A D | 09-May-2018 | 3.7 KiB | 13 | 12 | |
| realn02.fa | H A D | 09-May-2018 | 4.2 KiB | 72 | 71 | |
| realn02.fa.fai | H A D | 09-May-2018 | 17 | 2 | 1 | |
| realn02.sam | H A D | 09-May-2018 | 2.8 KiB | 13 | 12 | |
| realn02_exp-a.sam | H A D | 09-May-2018 | 3.7 KiB | 13 | 12 | |
| realn02_exp-e.sam | H A D | 09-May-2018 | 3.7 KiB | 13 | 12 | |
| realn02_exp.sam | H A D | 09-May-2018 | 3.7 KiB | 13 | 12 | |
| sam.c | H A D | 09-May-2018 | 14 KiB | 379 | 274 | |
| test-bcf-sr.c | H A D | 09-May-2018 | 4.8 KiB | 142 | 99 | |
| test-bcf-sr.pl | H A D | 09-May-2018 | 15.7 KiB | 549 | 485 | |
| test-bcf-translate.c | H A D | 09-May-2018 | 8.4 KiB | 193 | 72 | |
| test-bcf-translate.out | H A D | 09-May-2018 | 869 | 19 | 18 | |
| test-logging.pl | H A D | 09-May-2018 | 2.5 KiB | 97 | 61 | |
| test-regidx.c | H A D | 09-May-2018 | 4.2 KiB | 119 | 68 | |
| test-vcf-api.c | H A D | 09-May-2018 | 12.9 KiB | 403 | 304 | |
| test-vcf-api.out | H A D | 09-May-2018 | 1.9 KiB | 29 | 28 | |
| test-vcf-hdr-in.vcf | H A D | 09-May-2018 | 2 KiB | 26 | 25 | |
| test-vcf-hdr.out | H A D | 09-May-2018 | 1.3 KiB | 17 | 16 | |
| test-vcf-sweep.c | H A D | 09-May-2018 | 3.7 KiB | 115 | 62 | |
| test-vcf-sweep.out | H A D | 09-May-2018 | 92 | 5 | 4 | |
| test.pl | H A D | 09-May-2018 | 16.1 KiB | 500 | 383 | |
| test_bgzf.c | H A D | 09-May-2018 | 23.6 KiB | 783 | 604 | |
| test_realn.c | H A D | 09-May-2018 | 3.7 KiB | 143 | 126 | |
| test_view.c | H A D | 09-May-2018 | 11.7 KiB | 323 | 257 | |
| thrash_threads1.c | H A D | 09-May-2018 | 1.6 KiB | 48 | 19 | |
| thrash_threads2.c | H A D | 09-May-2018 | 1.6 KiB | 46 | 17 | |
| thrash_threads3.c | H A D | 09-May-2018 | 1.7 KiB | 51 | 22 | |
| thrash_threads4.c | H A D | 09-May-2018 | 2.2 KiB | 69 | 33 | |
| thrash_threads5.c | H A D | 09-May-2018 | 2.1 KiB | 67 | 36 | |
| thrash_threads6.c | H A D | 09-May-2018 | 3.3 KiB | 109 | 74 | |
| thread_pool.md | H A D | 09-May-2018 | 2.9 KiB | 59 | 43 | |
| xx#large_aux.sam | H A D | 09-May-2018 | 884.3 KiB | 5 | 4 | |
| xx#large_aux2.sam | H A D | 09-May-2018 | 651 | 12 | 11 | |
| xx#minimal.sam | H A D | 09-May-2018 | 254 | 11 | 10 | |
| xx#pair.sam | H A D | 09-May-2018 | 304 | 8 | 7 | |
| xx#repeated.sam | H A D | 09-May-2018 | 298 | 8 | 7 | |
| xx#rg.sam | H A D | 09-May-2018 | 517 | 14 | 13 | |
| xx#tlen.sam | H A D | 09-May-2018 | 1 KiB | 35 | 34 | |
| xx#tlen2.sam | H A D | 09-May-2018 | 1.1 KiB | 37 | 36 | |
| xx#triplet.sam | H A D | 09-May-2018 | 267 | 8 | 7 | |
| xx#unsorted.sam | H A D | 09-May-2018 | 320 | 9 | 8 | |
| xx.fa | H A D | 09-May-2018 | 51 | 6 | 4 | |
| xx.fa.fai | H A D | 09-May-2018 | 29 | 3 | 2 |