| /dports/biology/vt/vt-0.57721/lib/htslib/ |
| H A D | vcf_sweep.c | 93 while ( (ret=bcf_read1(sw->file, sw->hdr, rec))==0 ) in sw_fill_buffer()
152 int ret = bcf_read1(sw->file, sw->hdr, rec); in bcf_sweep_fwd()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/ |
| H A D | vcf_sweep.c | 93 while ( (ret=bcf_read1(sw->file, sw->hdr, rec))==0 ) in sw_fill_buffer()
152 int ret = bcf_read1(sw->file, sw->hdr, rec); in bcf_sweep_fwd()
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| /dports/biology/stacks/stacks-2.4/htslib/ |
| H A D | vcf_sweep.c | 93 while ( (ret=bcf_read1(sw->file, sw->hdr, rec))==0 ) in sw_fill_buffer()
152 int ret = bcf_read1(sw->file, sw->hdr, rec); in bcf_sweep_fwd()
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| /dports/biology/py-pysam/pysam-0.18.0/htslib/ |
| H A D | vcf_sweep.c | 98 while ( (ret=bcf_read1(sw->file, sw->hdr, rec))==0 ) in sw_fill_buffer()
159 int ret = bcf_read1(sw->file, sw->hdr, rec); in bcf_sweep_fwd()
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/ |
| H A D | vcf_sweep.c | 93 while ( (ret=bcf_read1(sw->file, sw->hdr, rec))==0 ) in sw_fill_buffer()
152 int ret = bcf_read1(sw->file, sw->hdr, rec); in bcf_sweep_fwd()
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/ |
| H A D | vcf_sweep.c | 98 while ( (ret=bcf_read1(sw->file, sw->hdr, rec))==0 ) in sw_fill_buffer()
159 int ret = bcf_read1(sw->file, sw->hdr, rec); in bcf_sweep_fwd()
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| /dports/biology/htslib/htslib-1.14/ |
| H A D | vcf_sweep.c | 98 while ( (ret=bcf_read1(sw->file, sw->hdr, rec))==0 ) in sw_fill_buffer()
159 int ret = bcf_read1(sw->file, sw->hdr, rec); in bcf_sweep_fwd()
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| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | vcfindex.c | 197 if (fp && hdr && rec && bcf_read1(fp, hdr, rec) >= 0) { in vcf_index_stats()
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| H A D | vcfsort.c | 239 int ret = bcf_read1(in, args->hdr, rec); in sort_blocks()
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| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | vcfindex.c | 197 if (fp && hdr && rec && bcf_read1(fp, hdr, rec) >= 0) { in vcf_index_stats()
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| H A D | vcfsort.c | 239 int ret = bcf_read1(in, args->hdr, rec); in sort_blocks()
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| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | vcfindex.c | 197 if (fp && hdr && rec && bcf_read1(fp, hdr, rec) >= 0) { in vcf_index_stats()
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| H A D | vcfindex.c.pysam.c | 199 if (fp && hdr && rec && bcf_read1(fp, hdr, rec) >= 0) { in vcf_index_stats()
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| H A D | vcfsort.c | 239 int ret = bcf_read1(in, args->hdr, rec); in sort_blocks()
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| H A D | vcfsort.c.pysam.c | 241 int ret = bcf_read1(in, args->hdr, rec); in sort_blocks()
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| /dports/biology/bcftools/bcftools-1.14/plugins/ |
| H A D | check-sparsity.c | 182 ret = bcf_read1(args->fp, args->hdr, args->rec); in test_region()
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| /dports/biology/bio-mocha/bcftools-1.14/plugins/ |
| H A D | check-sparsity.c | 182 ret = bcf_read1(args->fp, args->hdr, args->rec); in test_region()
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| /dports/biology/vt/vt-0.57721/lib/htslib/test/ |
| H A D | test-vcf-api.c | 186 while ( bcf_read1(fp, hdr, rec)>=0 ) in bcf_to_vcf()
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/test/ |
| H A D | test-vcf-api.c | 186 while ( bcf_read1(fp, hdr, rec)>=0 ) in bcf_to_vcf()
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/test/ |
| H A D | test_view.c | 248 while ((r = bcf_read1(in, h, b)) >= 0) { in vcf_loop()
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| H A D | test-vcf-api.c | 249 while ((r = bcf_read1(fp, hdr, rec)) >= 0) in bcf_to_vcf()
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| /dports/biology/htslib/htslib-1.14/test/ |
| H A D | test_view.c | 250 while ((r = bcf_read1(in, h, b)) >= 0) { in vcf_loop()
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| H A D | test-vcf-api.c | 308 while ((r = bcf_read1(fp, hdr, rec)) >= 0) in bcf_to_vcf()
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| /dports/biology/vt/vt-0.57721/lib/htslib/htslib/ |
| H A D | vcf.h | 241 #define bcf_read1(fp,h,v) bcf_read((fp),(h),(v)) macro
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/htslib/ |
| H A D | vcf.h | 241 #define bcf_read1(fp,h,v) bcf_read((fp),(h),(v)) macro
|