| /dports/biology/bcftools/bcftools-1.14/plugins/ |
| H A D | tag2tag.c | 178 bcf_update_format_float(out_hdr,rec,"GL",farr,n); in process()
180 bcf_update_format_float(out_hdr,rec,"GP",NULL,0); in process()
196 bcf_update_format_float(out_hdr,rec,"GL",farr,n); in process()
216 bcf_update_format_float(out_hdr,rec,"GL",NULL,0); in process()
276 bcf_update_format_float(out_hdr,rec,"GP",NULL,0); in process()
|
| /dports/biology/bio-mocha/bcftools-1.14/plugins/ |
| H A D | tag2tag.c | 178 bcf_update_format_float(out_hdr,rec,"GL",farr,n); in process()
180 bcf_update_format_float(out_hdr,rec,"GP",NULL,0); in process()
196 bcf_update_format_float(out_hdr,rec,"GL",farr,n); in process()
216 bcf_update_format_float(out_hdr,rec,"GL",NULL,0); in process()
276 bcf_update_format_float(out_hdr,rec,"GP",NULL,0); in process()
|
| /dports/biology/vt/vt-0.57721/ |
| H A D | decompose2.cpp | 338 … if (has_GL) bcf_update_format_float(odw->hdr, nv, "GL", gls, no_samples*n_genotype2); in decompose2()
713 … bcf_update_format_float(odw->hdr, nv, tag, gs, no_samples*n_genotype2); in decompose2()
787 … bcf_update_format_float(odw->hdr, nv, tag, as, no_samples); in decompose2()
850 … bcf_update_format_float(odw->hdr, nv, tag, as, no_samples*2); in decompose2()
|
| H A D | decompose.cpp | 368 … if (has_GL) bcf_update_format_float(odw->hdr, nv, "GL", gls, no_samples*n_genotype2); in decompose()
751 … bcf_update_format_float(odw->hdr, nv, tag, gs, no_samples*n_genotype2); in decompose()
825 … bcf_update_format_float(odw->hdr, nv, tag, as, no_samples); in decompose()
888 … bcf_update_format_float(odw->hdr, nv, tag, as, no_samples*2); in decompose()
|
| H A D | milk_filter.cpp | 727 if ( bcf_update_format_float(odw->hdr, nv, "LRE", fLREs, nfams) ) { in milk_filter()
732 if ( bcf_update_format_float(odw->hdr, nv, "LUD", fLUDs, nfams) ) { in milk_filter()
737 if ( bcf_update_format_float(odw->hdr, nv, "BF", fBFs, nfams) ) { in milk_filter()
|
| H A D | paste.cpp | 297 … bcf_update_format_float(odw->hdr, nv, genotype_field, data, no_samples * vs[0]->d.fmt[i].n); in paste()
|
| H A D | discover.cpp | 869 bcf_update_format_float(odw->hdr, v, "MQS", &info.mean_quals[0], no); in write_to_vcf()
907 bcf_update_format_float(odw->hdr, v, "MQS", mean_quals, no); in write_to_vcf()
|
| H A D | merge_genotypes.cpp | 611 bcf_update_format_float(odw->hdr, nv, "CG", &cg[0], cg.size()); in merge_genotypes()
|
| H A D | bcf_genotyping_buffered_reader.cpp | 2722 bcf_update_format_float(odw->hdr, v, "CG", &cgs[0], 2); in genotype_and_print()
2729 bcf_update_format_float(odw->hdr, v, "CT", &g->counts[0], g->counts.size()); in genotype_and_print()
|
| /dports/biology/vt/vt-0.57721/lib/htslib/test/ |
| H A D | test-vcf-api.c | 334 bcf_update_format_float(hdr, rec, "TF", test, 4); in write_format_values()
|
| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/test/ |
| H A D | test-vcf-api.c | 333 bcf_update_format_float(hdr, rec, "TF", test, 4); in write_format_values()
|
| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/test/ |
| H A D | test-vcf-api.c | 423 check0(bcf_update_format_float(hdr, rec, "TF", test, 4)); in write_format_values()
|
| /dports/biology/htslib/htslib-1.14/test/ |
| H A D | test-vcf-api.c | 482 check0(bcf_update_format_float(hdr, rec, "TF", test, 4)); in write_format_values()
|
| /dports/biology/vt/vt-0.57721/lib/htslib/htslib/ |
| H A D | vcf.h | 599 …#define bcf_update_format_float(hdr,line,key,values,n) bcf_update_format((hdr),(line),(key),(value… macro
|
| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/htslib/ |
| H A D | vcf.h | 599 …#define bcf_update_format_float(hdr,line,key,values,n) bcf_update_format((hdr),(line),(key),(value… macro
|
| /dports/biology/stacks/stacks-2.4/htslib/htslib/ |
| H A D | vcf.h | 599 …#define bcf_update_format_float(hdr,line,key,values,n) bcf_update_format((hdr),(line),(key),(value… macro
|
| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/htslib/ |
| H A D | vcf.h | 599 …#define bcf_update_format_float(hdr,line,key,values,n) bcf_update_format((hdr),(line),(key),(value… macro
|
| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/htslib/ |
| H A D | vcf.h | 880 …#define bcf_update_format_float(hdr,line,key,values,n) bcf_update_format((hdr),(line),(key),(value… macro
|
| /dports/biology/py-pysam/pysam-0.18.0/htslib/htslib/ |
| H A D | vcf.h | 881 …#define bcf_update_format_float(hdr,line,key,values,n) bcf_update_format((hdr),(line),(key),(value… macro
|
| /dports/biology/htslib/htslib-1.14/htslib/ |
| H A D | vcf.h | 881 …#define bcf_update_format_float(hdr,line,key,values,n) bcf_update_format((hdr),(line),(key),(value… macro
|
| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | vcfannotate.c | 1455 … return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,vals,nvals*args->nsmpl_annot); in core_setter_format_real()
1477 …return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,args->tmpf2,nvals*bcf_hdr_nsamp… in core_setter_format_real()
1492 …return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,args->tmpf2,ndst*bcf_hdr_nsampl… in core_setter_format_real()
1515 …return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,args->tmpf3,nvals*bcf_hdr_nsamp… in core_setter_format_real()
1899 return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,args->tmpf2,nsmpl_dst*ndst1); in vcf_setter_format_real()
|
| H A D | vcfmerge.c | 1877 … bcf_update_format_float(args->out_hdr, out, args->tmps.s, (float*)ma->tmp_arr, nsamples*nsize); in merge_localized_numberG_format_field()
1973 … bcf_update_format_float(args->out_hdr, out, args->tmps.s, (float*)ma->tmp_arr, nsamples*nsize); in merge_localized_numberAR_format_field()
2213 bcf_update_format_float(out_hdr, out, key, (float*)ma->tmp_arr, nsamples*nsize); in merge_format_field()
|
| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | vcfannotate.c | 1455 … return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,vals,nvals*args->nsmpl_annot); in core_setter_format_real()
1477 …return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,args->tmpf2,nvals*bcf_hdr_nsamp… in core_setter_format_real()
1492 …return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,args->tmpf2,ndst*bcf_hdr_nsampl… in core_setter_format_real()
1515 …return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,args->tmpf3,nvals*bcf_hdr_nsamp… in core_setter_format_real()
1899 return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,args->tmpf2,nsmpl_dst*ndst1); in vcf_setter_format_real()
|
| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | vcfannotate.c | 1455 … return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,vals,nvals*args->nsmpl_annot); in core_setter_format_real()
1477 …return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,args->tmpf2,nvals*bcf_hdr_nsamp… in core_setter_format_real()
1492 …return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,args->tmpf2,ndst*bcf_hdr_nsampl… in core_setter_format_real()
1515 …return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,args->tmpf3,nvals*bcf_hdr_nsamp… in core_setter_format_real()
1899 return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,args->tmpf2,nsmpl_dst*ndst1); in vcf_setter_format_real()
|
| H A D | vcfannotate.c.pysam.c | 1457 … return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,vals,nvals*args->nsmpl_annot); in core_setter_format_real()
1479 …return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,args->tmpf2,nvals*bcf_hdr_nsamp… in core_setter_format_real()
1494 …return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,args->tmpf2,ndst*bcf_hdr_nsampl… in core_setter_format_real()
1517 …return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,args->tmpf3,nvals*bcf_hdr_nsamp… in core_setter_format_real()
1901 return bcf_update_format_float(args->hdr_out,line,col->hdr_key_dst,args->tmpf2,nsmpl_dst*ndst1); in vcf_setter_format_real()
|