/dports/sysutils/pnscan/pnscan-1.14.1/ |
H A D | bm.c | 89 preBmGs(unsigned char *x, int m, int bmGs[]) in preBmGs() argument 101 bmGs[i] = m; in preBmGs() 107 if (bmGs[j] == m) in preBmGs() 108 bmGs[j] = m - 1 - i; in preBmGs() 111 bmGs[m - 1 - suff[i]] = m - 1 - i; in preBmGs() 130 bmp->bmGs = (int *) calloc(sizeof(int), m); in bm_init() 131 if (bmp->bmGs == NULL) in bm_init() 143 if (preBmGs(bmp->saved_x, m, bmp->bmGs) < 0) in bm_init() 155 if (bmp->bmGs) in bm_destroy() 156 free(bmp->bmGs); in bm_destroy() [all …]
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H A D | bm.h | 41 int *bmGs; member
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/dports/security/suricata/suricata-6.0.4/src/ |
H A D | util-spm-bm.c | 66 PreBmGsNocase(needle, needle_len, bm_ctx->bmGs); in BoyerMooreCtxToNocase() 192 bmGs[i] = m; in PreBmGs() 199 if (bmGs[j] == m) in PreBmGs() 200 bmGs[j] = m - 1 - i; in PreBmGs() 203 bmGs[m - 1 - suff[i]] = m - 1 - i; in PreBmGs() 267 bmGs[i] = m; in PreBmGsNocase() 273 if (bmGs[j] == m) { in PreBmGsNocase() 274 bmGs[j] = m - 1 - i; in PreBmGsNocase() 280 bmGs[m - 1 - suff[i]] = m - 1 - i; in PreBmGsNocase() 301 uint16_t *bmGs = bm_ctx->bmGs; in BoyerMoore() local [all …]
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H A D | util-spm-bm.h | 37 uint16_t bmGs[]; // = SCMalloc(sizeof(int16_t)*(needlelen + 1)); member
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/dports/biology/seqan1/seqan-1.3.1/lib/samtools/ |
H A D | kstring.c | 92 int i, *suff, *prep, *bmGs, *bmBc; in ksBM_prep() local 94 bmGs = prep; bmBc = prep + m; in ksBM_prep() 117 for (i = 0; i < m; ++i) bmGs[i] = m; in ksBM_prep() 121 if (bmGs[j] == m) in ksBM_prep() 122 bmGs[j] = m - 1 - i; in ksBM_prep() 124 bmGs[m - 1 - suff[i]] = m - 1 - i; in ksBM_prep() 132 int i, j, *prep = 0, *bmGs, *bmBc; in kmemmem() local 137 bmGs = prep; bmBc = prep + m; in kmemmem() 143 if (max < bmGs[i]) max = bmGs[i]; in kmemmem()
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/dports/www/h2o-devel/h2o-dcc7134/deps/klib/ |
H A D | kstring.c | 117 int i, *suff, *prep, *bmGs, *bmBc; in ksBM_prep() local 119 bmGs = prep; bmBc = prep + m; in ksBM_prep() 142 for (i = 0; i < m; ++i) bmGs[i] = m; in ksBM_prep() 146 if (bmGs[j] == m) in ksBM_prep() 147 bmGs[j] = m - 1 - i; in ksBM_prep() 149 bmGs[m - 1 - suff[i]] = m - 1 - i; in ksBM_prep() 157 int i, j, *prep = 0, *bmGs, *bmBc; in kmemmem() local 162 bmGs = prep; bmBc = prep + m; in kmemmem() 168 if (max < bmGs[i]) max = bmGs[i]; in kmemmem()
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/dports/biology/ugene/ugene-40.1/src/libs_3rdparty/samtools/src/samtools/ |
H A D | kstring.c | 100 int i, *suff, *prep, *bmGs, *bmBc; in ksBM_prep() local 102 bmGs = prep; bmBc = prep + m; in ksBM_prep() 125 for (i = 0; i < m; ++i) bmGs[i] = m; in ksBM_prep() 129 if (bmGs[j] == m) in ksBM_prep() 130 bmGs[j] = m - 1 - i; in ksBM_prep() 132 bmGs[m - 1 - suff[i]] = m - 1 - i; in ksBM_prep() 140 int i, j, *prep = 0, *bmGs, *bmBc; in kmemmem() local 145 bmGs = prep; bmBc = prep + m; in kmemmem() 151 if (max < bmGs[i]) max = bmGs[i]; in kmemmem()
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/dports/biology/stringtie/stringtie-2.1.1/samtools-0.1.18/ |
H A D | kstring.c | 100 int i, *suff, *prep, *bmGs, *bmBc; in ksBM_prep() local 102 bmGs = prep; bmBc = prep + m; in ksBM_prep() 125 for (i = 0; i < m; ++i) bmGs[i] = m; in ksBM_prep() 129 if (bmGs[j] == m) in ksBM_prep() 130 bmGs[j] = m - 1 - i; in ksBM_prep() 132 bmGs[m - 1 - suff[i]] = m - 1 - i; in ksBM_prep() 140 int i, j, *prep = 0, *bmGs, *bmBc; in kmemmem() local 145 bmGs = prep; bmBc = prep + m; in kmemmem() 151 if (max < bmGs[i]) max = bmGs[i]; in kmemmem()
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/dports/biology/vt/vt-0.57721/lib/htslib/ |
H A D | kstring.c | 283 int i, *suff, *prep, *bmGs, *bmBc; in ksBM_prep() local 285 bmGs = prep; bmBc = prep + m; in ksBM_prep() 308 for (i = 0; i < m; ++i) bmGs[i] = m; in ksBM_prep() 312 if (bmGs[j] == m) in ksBM_prep() 313 bmGs[j] = m - 1 - i; in ksBM_prep() 315 bmGs[m - 1 - suff[i]] = m - 1 - i; in ksBM_prep() 323 int i, j, *prep = 0, *bmGs, *bmBc; in kmemmem() local 328 bmGs = prep; bmBc = prep + m; in kmemmem() 334 if (max < bmGs[i]) max = bmGs[i]; in kmemmem()
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/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/ |
H A D | kstring.c | 283 int i, *suff, *prep, *bmGs, *bmBc; in ksBM_prep() local 285 bmGs = prep; bmBc = prep + m; in ksBM_prep() 308 for (i = 0; i < m; ++i) bmGs[i] = m; in ksBM_prep() 312 if (bmGs[j] == m) in ksBM_prep() 313 bmGs[j] = m - 1 - i; in ksBM_prep() 315 bmGs[m - 1 - suff[i]] = m - 1 - i; in ksBM_prep() 323 int i, j, *prep = 0, *bmGs, *bmBc; in kmemmem() local 328 bmGs = prep; bmBc = prep + m; in kmemmem() 334 if (max < bmGs[i]) max = bmGs[i]; in kmemmem()
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/dports/biology/stacks/stacks-2.4/htslib/ |
H A D | kstring.c | 281 int i, *suff, *prep, *bmGs, *bmBc; in ksBM_prep() local 283 bmGs = prep; bmBc = prep + m; in ksBM_prep() 306 for (i = 0; i < m; ++i) bmGs[i] = m; in ksBM_prep() 310 if (bmGs[j] == m) in ksBM_prep() 311 bmGs[j] = m - 1 - i; in ksBM_prep() 313 bmGs[m - 1 - suff[i]] = m - 1 - i; in ksBM_prep() 321 int i, j, *prep = 0, *bmGs, *bmBc; in kmemmem() local 326 bmGs = prep; bmBc = prep + m; in kmemmem() 332 if (max < bmGs[i]) max = bmGs[i]; in kmemmem()
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/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/ |
H A D | kstring.c | 280 int i, *suff, *prep, *bmGs, *bmBc; in ksBM_prep() local 282 bmGs = prep; bmBc = prep + m; in ksBM_prep() 305 for (i = 0; i < m; ++i) bmGs[i] = m; in ksBM_prep() 309 if (bmGs[j] == m) in ksBM_prep() 310 bmGs[j] = m - 1 - i; in ksBM_prep() 312 bmGs[m - 1 - suff[i]] = m - 1 - i; in ksBM_prep() 320 int i, j, *prep = 0, *bmGs, *bmBc; in kmemmem() local 325 bmGs = prep; bmBc = prep + m; in kmemmem() 331 if (max < bmGs[i]) max = bmGs[i]; in kmemmem()
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/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/ |
H A D | kstring.c | 320 int i, *suff, *prep, *bmGs, *bmBc; in ksBM_prep() local 323 bmGs = prep; bmBc = prep + m; in ksBM_prep() 347 for (i = 0; i < m; ++i) bmGs[i] = m; in ksBM_prep() 351 if (bmGs[j] == m) in ksBM_prep() 352 bmGs[j] = m - 1 - i; in ksBM_prep() 354 bmGs[m - 1 - suff[i]] = m - 1 - i; in ksBM_prep() 362 int i, j, *prep = 0, *bmGs, *bmBc; in kmemmem() local 368 bmGs = prep; bmBc = prep + m; in kmemmem() 374 if (max < bmGs[i]) max = bmGs[i]; in kmemmem()
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/dports/biology/py-pysam/pysam-0.18.0/htslib/ |
H A D | kstring.c | 329 int i, *suff, *prep, *bmGs, *bmBc; in ksBM_prep() local 332 bmGs = prep; bmBc = prep + m; in ksBM_prep() 356 for (i = 0; i < m; ++i) bmGs[i] = m; in ksBM_prep() 360 if (bmGs[j] == m) in ksBM_prep() 361 bmGs[j] = m - 1 - i; in ksBM_prep() 363 bmGs[m - 1 - suff[i]] = m - 1 - i; in ksBM_prep() 371 int i, j, *prep = 0, *bmGs, *bmBc; in kmemmem() local 377 bmGs = prep; bmBc = prep + m; in kmemmem() 383 if (max < bmGs[i]) max = bmGs[i]; in kmemmem()
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/dports/biology/htslib/htslib-1.14/ |
H A D | kstring.c | 329 int i, *suff, *prep, *bmGs, *bmBc; in ksBM_prep() local 332 bmGs = prep; bmBc = prep + m; in ksBM_prep() 356 for (i = 0; i < m; ++i) bmGs[i] = m; in ksBM_prep() 360 if (bmGs[j] == m) in ksBM_prep() 361 bmGs[j] = m - 1 - i; in ksBM_prep() 363 bmGs[m - 1 - suff[i]] = m - 1 - i; in ksBM_prep() 371 int i, j, *prep = 0, *bmGs, *bmBc; in kmemmem() local 377 bmGs = prep; bmBc = prep + m; in kmemmem() 383 if (max < bmGs[i]) max = bmGs[i]; in kmemmem()
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/dports/textproc/bsdgrep/grep-2.6.0-FreeBSD/regex/ |
H A D | tre-fastmatch.c | 149 gs = fg->bmGs[mismatch]; \ 370 fg->bmGs = malloc(fg->wlen * sizeof(*fg->bmGs)); \ 371 if (!fg->bmGs) \ 374 fg->bmGs[0] = 1; \ 376 _FILL_BMGS(fg->bmGs, fg->wpattern, fg->wlen, true); \ 378 fg->bmGs); \ 1006 free(fg->bmGs); in tre_free_fast()
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H A D | fastmatch.h | 17 unsigned int *bmGs; member
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/dports/databases/mysql55-client/mysql-5.5.62/sql/ |
H A D | item_cmpfunc.cc | 4913 bmGs = suff + pattern_len + 1; in fix_fields() 4914 bmBc = bmGs + pattern_len + 1; in fix_fields() 5153 int *end = bmGs + pattern_len; in turboBM_compute_good_suffix_shifts() 5155 for (k = bmGs; k < end; k++) in turboBM_compute_good_suffix_shifts() 5168 int *tmp2 = bmGs + j; in turboBM_compute_good_suffix_shifts() 5178 tmp2 = bmGs + j; in turboBM_compute_good_suffix_shifts() 5183 tmp2 = bmGs + plm1; in turboBM_compute_good_suffix_shifts() 5255 shift = max(shift, bmGs[i]); in turboBM_matches() 5256 if (shift == bmGs[i]) in turboBM_matches() 5286 shift = max(shift, bmGs[i]); in turboBM_matches() [all …]
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/dports/databases/percona56-client/percona-server-5.6.51-91.0/sql/ |
H A D | item_cmpfunc.cc | 5434 bmGs = suff + pattern_len + 1; in fix_fields() 5435 bmBc = bmGs + pattern_len + 1; in fix_fields() 5676 int *end = bmGs + pattern_len; in turboBM_compute_good_suffix_shifts() 5678 for (k = bmGs; k < end; k++) in turboBM_compute_good_suffix_shifts() 5691 int *tmp2 = bmGs + j; in turboBM_compute_good_suffix_shifts() 5701 tmp2 = bmGs + j; in turboBM_compute_good_suffix_shifts() 5706 tmp2 = bmGs + plm1; in turboBM_compute_good_suffix_shifts() 5778 shift = max(shift, bmGs[i]); in turboBM_matches() 5779 if (shift == bmGs[i]) in turboBM_matches() 5809 shift = max(shift, bmGs[i]); in turboBM_matches() [all …]
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/dports/databases/percona-pam-for-mysql/percona-server-5.6.51-91.0/sql/ |
H A D | item_cmpfunc.cc | 5434 bmGs = suff + pattern_len + 1; in fix_fields() 5435 bmBc = bmGs + pattern_len + 1; in fix_fields() 5676 int *end = bmGs + pattern_len; in turboBM_compute_good_suffix_shifts() 5678 for (k = bmGs; k < end; k++) in turboBM_compute_good_suffix_shifts() 5691 int *tmp2 = bmGs + j; in turboBM_compute_good_suffix_shifts() 5701 tmp2 = bmGs + j; in turboBM_compute_good_suffix_shifts() 5706 tmp2 = bmGs + plm1; in turboBM_compute_good_suffix_shifts() 5778 shift = max(shift, bmGs[i]); in turboBM_matches() 5779 if (shift == bmGs[i]) in turboBM_matches() 5809 shift = max(shift, bmGs[i]); in turboBM_matches() [all …]
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/dports/databases/mysqlwsrep56-server/mysql-wsrep-wsrep_5.6.51-25.33/sql/ |
H A D | item_cmpfunc.cc | 5434 bmGs = suff + pattern_len + 1; in fix_fields() 5435 bmBc = bmGs + pattern_len + 1; in fix_fields() 5676 int *end = bmGs + pattern_len; in turboBM_compute_good_suffix_shifts() 5678 for (k = bmGs; k < end; k++) in turboBM_compute_good_suffix_shifts() 5691 int *tmp2 = bmGs + j; in turboBM_compute_good_suffix_shifts() 5701 tmp2 = bmGs + j; in turboBM_compute_good_suffix_shifts() 5706 tmp2 = bmGs + plm1; in turboBM_compute_good_suffix_shifts() 5778 shift = max(shift, bmGs[i]); in turboBM_matches() 5779 if (shift == bmGs[i]) in turboBM_matches() 5809 shift = max(shift, bmGs[i]); in turboBM_matches() [all …]
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/dports/databases/percona56-server/percona-server-5.6.51-91.0/sql/ |
H A D | item_cmpfunc.cc | 5434 bmGs = suff + pattern_len + 1; in fix_fields() 5435 bmBc = bmGs + pattern_len + 1; in fix_fields() 5676 int *end = bmGs + pattern_len; in turboBM_compute_good_suffix_shifts() 5678 for (k = bmGs; k < end; k++) in turboBM_compute_good_suffix_shifts() 5691 int *tmp2 = bmGs + j; in turboBM_compute_good_suffix_shifts() 5701 tmp2 = bmGs + j; in turboBM_compute_good_suffix_shifts() 5706 tmp2 = bmGs + plm1; in turboBM_compute_good_suffix_shifts() 5778 shift = max(shift, bmGs[i]); in turboBM_matches() 5779 if (shift == bmGs[i]) in turboBM_matches() 5809 shift = max(shift, bmGs[i]); in turboBM_matches() [all …]
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/dports/databases/mariadb103-server/mariadb-10.3.34/sql/ |
H A D | item_cmpfunc.cc | 5462 bmGs = suff + pattern_len + 1; in fix_fields() 5463 bmBc = bmGs + pattern_len + 1; in fix_fields() 5915 int *end = bmGs + pattern_len; in turboBM_compute_good_suffix_shifts() 5917 for (k = bmGs; k < end; k++) in turboBM_compute_good_suffix_shifts() 5930 int *tmp2 = bmGs + j; in turboBM_compute_good_suffix_shifts() 5940 tmp2 = bmGs + j; in turboBM_compute_good_suffix_shifts() 5945 tmp2 = bmGs + plm1; in turboBM_compute_good_suffix_shifts() 6017 shift = MY_MAX(shift, bmGs[i]); in turboBM_matches() 6018 if (shift == bmGs[i]) in turboBM_matches() 6048 shift = MY_MAX(shift, bmGs[i]); in turboBM_matches() [all …]
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/dports/databases/mariadb103-client/mariadb-10.3.34/sql/ |
H A D | item_cmpfunc.cc | 5462 bmGs = suff + pattern_len + 1; in fix_fields() 5463 bmBc = bmGs + pattern_len + 1; in fix_fields() 5915 int *end = bmGs + pattern_len; in turboBM_compute_good_suffix_shifts() 5917 for (k = bmGs; k < end; k++) in turboBM_compute_good_suffix_shifts() 5930 int *tmp2 = bmGs + j; in turboBM_compute_good_suffix_shifts() 5940 tmp2 = bmGs + j; in turboBM_compute_good_suffix_shifts() 5945 tmp2 = bmGs + plm1; in turboBM_compute_good_suffix_shifts() 6017 shift = MY_MAX(shift, bmGs[i]); in turboBM_matches() 6018 if (shift == bmGs[i]) in turboBM_matches() 6048 shift = MY_MAX(shift, bmGs[i]); in turboBM_matches() [all …]
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/dports/databases/mysql56-client/mysql-5.6.51/sql/ |
H A D | item_cmpfunc.cc | 5434 bmGs = suff + pattern_len + 1; in fix_fields() 5435 bmBc = bmGs + pattern_len + 1; in fix_fields() 5676 int *end = bmGs + pattern_len; in turboBM_compute_good_suffix_shifts() 5678 for (k = bmGs; k < end; k++) in turboBM_compute_good_suffix_shifts() 5691 int *tmp2 = bmGs + j; in turboBM_compute_good_suffix_shifts() 5701 tmp2 = bmGs + j; in turboBM_compute_good_suffix_shifts() 5706 tmp2 = bmGs + plm1; in turboBM_compute_good_suffix_shifts() 5778 shift = max(shift, bmGs[i]); in turboBM_matches() 5779 if (shift == bmGs[i]) in turboBM_matches() 5809 shift = max(shift, bmGs[i]); in turboBM_matches() [all …]
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