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Searched refs:burninFraction (Results 1 – 6 of 6) sorted by relevance

/dports/biology/mrbayes/MrBayes-3.2.7/src/
H A Dsumpt.c222 spacer, chainParams.burninFraction*100.0, chainParams.burninFraction); in DoSump()
568 spacer, chainParams.burninFraction*100.0, chainParams.burninFraction); in DoSumSs()
671 stepBurnin = (int)(numSamplesInStepSS*chainParams.burninFraction); in DoSumSs()
1206 chainParams.burninFraction = tempD; in DoSumpParm()
1457 chainParams.burninFraction = tempD; in DoSumSsParm()
1755 burnin = (int) (chainParams.burninFraction * numParamLines); in ExamineSumpFile()
3763 spacer, chainParams.burninFraction*100.0, chainParams.burninFraction); in DoCompareTree()
4532 chainParams.burninFraction = tempD; in DoCompareTreeParm()
4631 burnin = (int)(chainParams.burninFraction * tFileInfo.numTreesInLastBlock); in DoCompRefTree()
4942 spacer, chainParams.burninFraction*100.0, chainParams.burninFraction); in DoSumt()
[all …]
H A Dbayes.c998 …chainParams.burninFraction = 0.25; /* default burnin fraction … in ReinitializeMrBayes()
H A Dbayes.h1192 MrBFlt burninFraction; /* the sample fraction to discard as burnin */ member
H A Dcommand.c9731 … <number> %1.2lf \n", chainParams.burninFraction); in GetUserHelp()
12861 … <number> %1.2lf \n", chainParams.burninFraction); in GetUserHelp()
13013 … <number> %1.2lf \n", chainParams.burninFraction); in GetUserHelp()
13076 … <number> %1.2lf \n", chainParams.burninFraction); in GetUserHelp()
13221 … <number> %1.2lf \n", chainParams.burninFraction); in GetUserHelp()
14019 … <number> %1.2lf \n", chainParams.burninFraction); in PrintSettings()
H A Dmcmc.c3645 chainParams.burninFraction = tempD; in DoMcmcParm()
3646 … MrBayesPrint ("%s Setting burnin fraction to %.2f\n", spacer, chainParams.burninFraction); in DoMcmcParm()
3708 … MrBayesPrint ("%s Setting burnin fraction to %.2f\n", spacer, chainParams.burninFraction); in DoMcmcParm()
13964 … Using a relative burnin of %.1f %% for diagnostics\n", spacer, 100.0*chainParams.burninFraction); in PrintToScreen()
14043 … Using a relative burnin of %.1f %% for diagnostics\n", spacer, 100.0*chainParams.burninFraction); in PrintToScreen()
16222 … chainParams.stopTreeGen = (int) (chainParams.numGen * chainParams.burninFraction); in RunChain()
16364 …numGenInStepBurninSS = ((int)(numGenInStepSS*chainParams.burninFraction / chainParams.sampleFreq))… in RunChain()
16494 j = (int) (j*chainParams.burninFraction); in RunChain()
16526 … Using a relative burnin of %.1f %% for diagnostics\n", spacer, 100.0*chainParams.burninFraction); in RunChain()
17050 …removeTo = (int)(chainParams.burninFraction * (n/chainParams.sampleFreq+1)); /* (n/chainParams.sam… in RunChain()
H A Dmodel.c4038 chainParams.burninFraction = tempD; in DoPlotParm()
4039 … MrBayesPrint ("%s Setting burnin fraction to %.2f\n", spacer, chainParams.burninFraction); in DoPlotParm()