Searched refs:burninFraction (Results 1 – 6 of 6) sorted by relevance
/dports/biology/mrbayes/MrBayes-3.2.7/src/ |
H A D | sumpt.c | 222 spacer, chainParams.burninFraction*100.0, chainParams.burninFraction); in DoSump() 568 spacer, chainParams.burninFraction*100.0, chainParams.burninFraction); in DoSumSs() 671 stepBurnin = (int)(numSamplesInStepSS*chainParams.burninFraction); in DoSumSs() 1206 chainParams.burninFraction = tempD; in DoSumpParm() 1457 chainParams.burninFraction = tempD; in DoSumSsParm() 1755 burnin = (int) (chainParams.burninFraction * numParamLines); in ExamineSumpFile() 3763 spacer, chainParams.burninFraction*100.0, chainParams.burninFraction); in DoCompareTree() 4532 chainParams.burninFraction = tempD; in DoCompareTreeParm() 4631 burnin = (int)(chainParams.burninFraction * tFileInfo.numTreesInLastBlock); in DoCompRefTree() 4942 spacer, chainParams.burninFraction*100.0, chainParams.burninFraction); in DoSumt() [all …]
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H A D | bayes.c | 998 …chainParams.burninFraction = 0.25; /* default burnin fraction … in ReinitializeMrBayes()
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H A D | bayes.h | 1192 MrBFlt burninFraction; /* the sample fraction to discard as burnin */ member
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H A D | command.c | 9731 … <number> %1.2lf \n", chainParams.burninFraction); in GetUserHelp() 12861 … <number> %1.2lf \n", chainParams.burninFraction); in GetUserHelp() 13013 … <number> %1.2lf \n", chainParams.burninFraction); in GetUserHelp() 13076 … <number> %1.2lf \n", chainParams.burninFraction); in GetUserHelp() 13221 … <number> %1.2lf \n", chainParams.burninFraction); in GetUserHelp() 14019 … <number> %1.2lf \n", chainParams.burninFraction); in PrintSettings()
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H A D | mcmc.c | 3645 chainParams.burninFraction = tempD; in DoMcmcParm() 3646 … MrBayesPrint ("%s Setting burnin fraction to %.2f\n", spacer, chainParams.burninFraction); in DoMcmcParm() 3708 … MrBayesPrint ("%s Setting burnin fraction to %.2f\n", spacer, chainParams.burninFraction); in DoMcmcParm() 13964 … Using a relative burnin of %.1f %% for diagnostics\n", spacer, 100.0*chainParams.burninFraction); in PrintToScreen() 14043 … Using a relative burnin of %.1f %% for diagnostics\n", spacer, 100.0*chainParams.burninFraction); in PrintToScreen() 16222 … chainParams.stopTreeGen = (int) (chainParams.numGen * chainParams.burninFraction); in RunChain() 16364 …numGenInStepBurninSS = ((int)(numGenInStepSS*chainParams.burninFraction / chainParams.sampleFreq))… in RunChain() 16494 j = (int) (j*chainParams.burninFraction); in RunChain() 16526 … Using a relative burnin of %.1f %% for diagnostics\n", spacer, 100.0*chainParams.burninFraction); in RunChain() 17050 …removeTo = (int)(chainParams.burninFraction * (n/chainParams.sampleFreq+1)); /* (n/chainParams.sam… in RunChain()
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H A D | model.c | 4038 chainParams.burninFraction = tempD; in DoPlotParm() 4039 … MrBayesPrint ("%s Setting burnin fraction to %.2f\n", spacer, chainParams.burninFraction); in DoPlotParm()
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