Searched refs:chainBurnIn (Results 1 – 6 of 6) sorted by relevance
/dports/biology/mrbayes/MrBayes-3.2.7/src/ |
H A D | sumpt.c | 225 spacer, chainParams.chainBurnIn, chainParams.chainBurnIn); in DoSump() 571 spacer, chainParams.chainBurnIn, chainParams.chainBurnIn); in DoSumSs() 675 stepBurnin = chainParams.chainBurnIn; in DoSumSs() 1179 chainParams.chainBurnIn = tempI; in DoSumpParm() 1430 chainParams.chainBurnIn = tempI; in DoSumSsParm() 1757 burnin = chainParams.chainBurnIn; in ExamineSumpFile() 3766 spacer, chainParams.chainBurnIn, chainParams.chainBurnIn); in DoCompareTree() 4507 chainParams.chainBurnIn = tempI; in DoCompareTreeParm() 4633 burnin = chainParams.chainBurnIn; in DoCompRefTree() 4945 spacer, chainParams.chainBurnIn, chainParams.chainBurnIn); in DoSumt() [all …]
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H A D | bayes.c | 1006 …chainParams.chainBurnIn = 0; /* chain burn in length … in ReinitializeMrBayes()
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H A D | bayes.h | 1173 int chainBurnIn; /* chain burn in length */ member
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H A D | mcmc.c | 3615 chainParams.chainBurnIn = tempI; in DoMcmcParm() 3616 … MrBayesPrint ("%s Setting chain burn-in to %d\n", spacer, chainParams.chainBurnIn); in DoMcmcParm() 11978 … if (chainParams.relativeBurnin == NO && curGen < chainParams.chainBurnIn * chainParams.sampleFreq) in PrintMCMCDiagnosticsToFile() 11993 … if (chainParams.relativeBurnin == NO && curGen < chainParams.chainBurnIn * chainParams.sampleFreq) in PrintMCMCDiagnosticsToFile() 13252 …if (chainParams.relativeBurnin == YES || curGen >= chainParams.chainBurnIn * chainParams.sampleFre… in PrintStatesToFiles() 13534 …if (chainParams.relativeBurnin == YES || curGen >= chainParams.chainBurnIn * chainParams.sampleFre… in PrintStatesToFiles() 16366 numGenInStepBurninSS = chainParams.chainBurnIn * chainParams.sampleFreq; in RunChain() 16515 else if (chainParams.chainBurnIn < i) in RunChain() 16517 … if (AddTreeSamples(chainParams.chainBurnIn,i-1,chainParams.saveTrees) == ERROR) nErrors++; in RunChain() 17041 … || (n >= chainParams.chainBurnIn * chainParams.sampleFreq && chainParams.relativeBurnin == NO))) in RunChain() [all …]
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H A D | command.c | 9730 … <number> %d \n", chainParams.chainBurnIn); in GetUserHelp() 12860 … <number> %d \n", chainParams.chainBurnIn); in GetUserHelp() 13012 … <number> %d \n", chainParams.chainBurnIn); in GetUserHelp() 13075 … <number> %d \n", chainParams.chainBurnIn); in GetUserHelp() 13220 … <number> %d \n", chainParams.chainBurnIn); in GetUserHelp() 14018 … <number> %d \n", chainParams.chainBurnIn); in PrintSettings()
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H A D | model.c | 4013 chainParams.chainBurnIn = tempI; in DoPlotParm() 4014 MrBayesPrint ("%s Setting burnin to %d\n", spacer, chainParams.chainBurnIn); in DoPlotParm()
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