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Searched refs:chainBurnIn (Results 1 – 6 of 6) sorted by relevance

/dports/biology/mrbayes/MrBayes-3.2.7/src/
H A Dsumpt.c225 spacer, chainParams.chainBurnIn, chainParams.chainBurnIn); in DoSump()
571 spacer, chainParams.chainBurnIn, chainParams.chainBurnIn); in DoSumSs()
675 stepBurnin = chainParams.chainBurnIn; in DoSumSs()
1179 chainParams.chainBurnIn = tempI; in DoSumpParm()
1430 chainParams.chainBurnIn = tempI; in DoSumSsParm()
1757 burnin = chainParams.chainBurnIn; in ExamineSumpFile()
3766 spacer, chainParams.chainBurnIn, chainParams.chainBurnIn); in DoCompareTree()
4507 chainParams.chainBurnIn = tempI; in DoCompareTreeParm()
4633 burnin = chainParams.chainBurnIn; in DoCompRefTree()
4945 spacer, chainParams.chainBurnIn, chainParams.chainBurnIn); in DoSumt()
[all …]
H A Dbayes.c1006 …chainParams.chainBurnIn = 0; /* chain burn in length … in ReinitializeMrBayes()
H A Dbayes.h1173 int chainBurnIn; /* chain burn in length */ member
H A Dmcmc.c3615 chainParams.chainBurnIn = tempI; in DoMcmcParm()
3616 … MrBayesPrint ("%s Setting chain burn-in to %d\n", spacer, chainParams.chainBurnIn); in DoMcmcParm()
11978 … if (chainParams.relativeBurnin == NO && curGen < chainParams.chainBurnIn * chainParams.sampleFreq) in PrintMCMCDiagnosticsToFile()
11993 … if (chainParams.relativeBurnin == NO && curGen < chainParams.chainBurnIn * chainParams.sampleFreq) in PrintMCMCDiagnosticsToFile()
13252 …if (chainParams.relativeBurnin == YES || curGen >= chainParams.chainBurnIn * chainParams.sampleFre… in PrintStatesToFiles()
13534 …if (chainParams.relativeBurnin == YES || curGen >= chainParams.chainBurnIn * chainParams.sampleFre… in PrintStatesToFiles()
16366 numGenInStepBurninSS = chainParams.chainBurnIn * chainParams.sampleFreq; in RunChain()
16515 else if (chainParams.chainBurnIn < i) in RunChain()
16517 … if (AddTreeSamples(chainParams.chainBurnIn,i-1,chainParams.saveTrees) == ERROR) nErrors++; in RunChain()
17041 … || (n >= chainParams.chainBurnIn * chainParams.sampleFreq && chainParams.relativeBurnin == NO))) in RunChain()
[all …]
H A Dcommand.c9730 … <number> %d \n", chainParams.chainBurnIn); in GetUserHelp()
12860 … <number> %d \n", chainParams.chainBurnIn); in GetUserHelp()
13012 … <number> %d \n", chainParams.chainBurnIn); in GetUserHelp()
13075 … <number> %d \n", chainParams.chainBurnIn); in GetUserHelp()
13220 … <number> %d \n", chainParams.chainBurnIn); in GetUserHelp()
14018 … <number> %d \n", chainParams.chainBurnIn); in PrintSettings()
H A Dmodel.c4013 chainParams.chainBurnIn = tempI; in DoPlotParm()
4014 MrBayesPrint ("%s Setting burnin to %d\n", spacer, chainParams.chainBurnIn); in DoPlotParm()