Searched refs:chr_to_idx (Results 1 – 3 of 3) sorted by relevance
323 if (chr_to_idx.find(chr) == chr_to_idx.end()) in filter_sites_by_positions()370 if (chr_to_idx.find(chr) == chr_to_idx.end()) in filter_sites_by_positions()388 if (chr_to_idx.find(CHROM) == chr_to_idx.end()) in filter_sites_by_positions()399 if (chr_to_idx.find(CHROM) != chr_to_idx.end()) in filter_sites_by_positions()451 if (chr_to_idx.find(chr) == chr_to_idx.end()) in filter_sites_by_overlap_positions()497 if (chr_to_idx.find(chr) == chr_to_idx.end()) in filter_sites_by_overlap_positions()515 if (chr_to_idx.find(CHROM) == chr_to_idx.end()) in filter_sites_by_overlap_positions()535 if (chr_to_idx.find(CHROM) != chr_to_idx.end()) in filter_sites_by_overlap_positions()597 if (chr_to_idx.find(chr) == chr_to_idx.end()) in filter_sites_by_BED_file()626 if (chr_to_idx.find(CHROM) == chr_to_idx.end()) in filter_sites_by_BED_file()[all …]
1185 map<string, int> chr_to_idx; in output_haplotype_count() local1196 if (chr_to_idx.find(CHROM) == chr_to_idx.end()) in output_haplotype_count()1203 idx = chr_to_idx[CHROM]; in output_haplotype_count()1261 if (chr_to_idx.find(CHROM) == chr_to_idx.end()) in output_haplotype_count()1264 idx = chr_to_idx[CHROM]; in output_haplotype_count()2280 if (chr_to_idx.find(CHROM) == chr_to_idx.end()) in output_haplotype_r2_of_SNP_list_vs_all_others()2287 idx = chr_to_idx[CHROM]; in output_haplotype_r2_of_SNP_list_vs_all_others()2363 if ( chr_to_idx.find(CHROM) != chr_to_idx.end() ) in output_haplotype_r2_of_SNP_list_vs_all_others()2522 if (chr_to_idx.find(CHROM) == chr_to_idx.end()) in output_genotype_r2_of_SNP_list_vs_all_others()2529 idx = chr_to_idx[CHROM]; in output_genotype_r2_of_SNP_list_vs_all_others()[all …]
154 static map<string,int> chr_to_idx; variable