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Searched refs:cinv_evec (Results 1 – 3 of 3) sorted by relevance

/dports/biology/iqtree/IQ-TREE-2.0.6/model/
H A Dmodelliemarkov.cpp1111cinv_evec[1] = cinv_evec[2] = cinv_evec[3] = cinv_evec[5] = cinv_evec[6] = cinv_evec[9] = cinv_eve… in decomposeRateMatrixClosedForm()
1146 cinv_evec[0] = cinv_evec[4] = cinv_evec[5] = cinv_evec[8] = cinv_evec[12] = cinv_evec[13] = 0.25; in decomposeRateMatrixClosedForm()
1182cinv_evec[0] =cinv_evec[3] =cinv_evec[4] =cinv_evec[5] =cinv_evec[8] =cinv_evec[10] =cinv_evec[12]… in decomposeRateMatrixClosedForm()
1183 cinv_evec[1] =cinv_evec[2] =cinv_evec[6] =cinv_evec[7] =cinv_evec[9] =cinv_evec[11] = -0.25; in decomposeRateMatrixClosedForm()
1219cinv_evec[0] =cinv_evec[4] =cinv_evec[5] =cinv_evec[8] =cinv_evec[12] =cinv_evec[13] =cinv_evec[14… in decomposeRateMatrixClosedForm()
1255 cinv_evec[0] =cinv_evec[4] =cinv_evec[5] =cinv_evec[8] =cinv_evec[12] =cinv_evec[13] = 0.25; in decomposeRateMatrixClosedForm()
1350 cinv_evec[1] = cinv_evec[2] = cinv_evec[3] = -cinv_evec[0]; in decomposeRateMatrixClosedForm()
1673 cinv_evec[1] = -cinv_evec[0]-cinv_evec[2]-cinv_evec[3]; in decomposeRateMatrixClosedForm()
1674 cinv_evec[5] = -cinv_evec[4]-cinv_evec[6] - cinv_evec[7]; in decomposeRateMatrixClosedForm()
1739 cinv_evec[1] = cinv_evec[9] = -cinv_evec[0]-cinv_evec[2]-cinv_evec[3]; in decomposeRateMatrixClosedForm()
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H A Dmodelmarkov.cpp57 ceval = cevec = cinv_evec = NULL; in ModelMarkov()
141 if (!cinv_evec) in setReversible()
142 cinv_evec = aligned_alloc<complex<double> >(num_states*num_states); in setReversible()
438 Map<MatrixXcd,Aligned> cinv_evectors(cinv_evec, num_states, num_states); in computeTransMatrixNonrev()
1120 Map<MatrixXcd,Aligned> inv_evec(cinv_evec, num_states, num_states); in decomposeRateMatrixNonrev()
1145 auto *inv_eigenvectors_ptr = cinv_evec + (i*num_states); in decomposeRateMatrixNonrev()
1628 if (cinv_evec) in freeMem()
1629 aligned_free(cinv_evec); in freeMem()
H A Dmodelmarkov.h523 std::complex<double> *ceval, *cevec, *cinv_evec; variable