Searched refs:codonCatFreqFix (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/mrbayes/MrBayes-3.2.7/src/ |
| H A D | bayes.c | 734 defaultModel.codonCatFreqFix[0] = 1.0/3.0; in InitializeMrBayes()
735 defaultModel.codonCatFreqFix[1] = 1.0/3.0; in InitializeMrBayes()
736 defaultModel.codonCatFreqFix[2] = 1.0/3.0; in InitializeMrBayes()
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| H A D | model.c | 5532 …(AreDoublesEqual (modelParams[i].codonCatFreqFix[0] + modelParams[i].codonCatFreqFix[1] + modelPar… in DoPrsetParm()
13372 …if (AreDoublesEqual (modelParams[part1].codonCatFreqFix[0], modelParams[part2].codonCatFreqFix[0],… in IsModelSame()
13374 …if (AreDoublesEqual (modelParams[part1].codonCatFreqFix[1], modelParams[part2].codonCatFreqFix[1],… in IsModelSame()
13376 …if (AreDoublesEqual (modelParams[part1].codonCatFreqFix[2], modelParams[part2].codonCatFreqFix[2],… in IsModelSame()
13393 …if (AreDoublesEqual (modelParams[part1].codonCatFreqFix[0], modelParams[part2].codonCatFreqFix[0],… in IsModelSame()
13395 …if (AreDoublesEqual (modelParams[part1].codonCatFreqFix[1], modelParams[part2].codonCatFreqFix[1],… in IsModelSame()
13447 …if (AreDoublesEqual (modelParams[part1].codonCatFreqFix[0], modelParams[part2].codonCatFreqFix[0],… in IsModelSame()
13449 …if (AreDoublesEqual (modelParams[part1].codonCatFreqFix[1], modelParams[part2].codonCatFreqFix[1],… in IsModelSame()
13451 …if (AreDoublesEqual (modelParams[part1].codonCatFreqFix[2], modelParams[part2].codonCatFreqFix[2],… in IsModelSame()
23386 …) on pi(-), pi(N), and pi(+)\n", spacer, mp->codonCatFreqFix[0], mp->codonCatFreqFix[1], mp->codon… in ShowParameters()
[all …]
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| H A D | bayes.h | 1034 MrBFlt codonCatFreqFix[3]; member
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| H A D | command.c | 11423 …rBayesPrint ("(%1.1lf,%1.1lf,%1.1lf)\n", mp->codonCatFreqFix[0], mp->codonCatFreqFix[1], mp->codon… in GetUserHelp()
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