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Searched refs:cov_en (Results 1 – 4 of 4) sorted by relevance

/dports/biology/viennarna/ViennaRNA-2.4.18/src/bin/
H A DRNALalifold.c626 float cov_en = vrna_eval_covar_structure(sub_fc, ss); in print_hit_cb() local
630 -cov_en, in print_hit_cb()
631 en - real_en + cov_en, in print_hit_cb()
638 -cov_en, in print_hit_cb()
639 en - real_en + cov_en, in print_hit_cb()
H A DRNAeval.c737 double real_en, cov_en; in process_alignment_record() local
790 cov_en = vrna_eval_covar_structure(vc, structure); in process_alignment_record()
799 DBL_ROUND(real_en - cov_en, 2), in process_alignment_record()
801 DBL_ROUND(-cov_en, 2)); in process_alignment_record()
H A DRNAalifold.c873 double min_en, real_en, cov_en; in process_record() local
960 cov_en = vrna_eval_covar_structure(vc, mfe_structure); in process_record()
974 DBL_ROUND(-cov_en, 2), in process_record()
975 DBL_ROUND(min_en - real_en + cov_en, 2), in process_record()
999 DBL_ROUND(-cov_en, 2), in process_record()
1000 DBL_ROUND(min_en - real_en + cov_en, 2)); in process_record()
/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/
H A Dsnofold.c737 int b = 0, cov_en = 0; in alibacktrack() local
791 cov_en += pscore[indx[j - 1] + i + 1]; in alibacktrack()
833 cov_en += pscore[indx[q] + p]; in alibacktrack()
862 return cov_en; in alibacktrack()