| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/ |
| H A D | model_details.i | 30 int energy_set; member
71 const int energy_set = vrna_md_defaults_energy_set_get(),
97 md->energy_set = energy_set;
155 out << ", energy_set: " << $self->energy_set ; in __str__()
217 extern int energy_set;
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| H A D | model_details.dox | 39 | energy_set | vrna_md_defaults_energy_set_get() | vrna_md_defaults_energy_set() |
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| /dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/ |
| H A D | pair_mat.h | 55 if (energy_set > 0) { in encode_char()
85 if (energy_set == 0) { in make_pair_matrix()
111 if (energy_set == 1) { in make_pair_matrix()
121 } else if (energy_set == 2) { in make_pair_matrix()
131 } else if (energy_set == 3) { in make_pair_matrix()
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| H A D | model.c | 59 int energy_set = VRNA_MODEL_DEFAULT_ENERGY_SET; variable
326 defaults.energy_set = VRNA_MODEL_DEFAULT_ENERGY_SET; in vrna_md_defaults_reset()
360 vrna_md_defaults_energy_set(md_p->energy_set); in vrna_md_defaults_reset()
389 energy_set = defaults.energy_set; in vrna_md_defaults_reset()
619 defaults.energy_set = e; in vrna_md_defaults_energy_set()
621 energy_set = e; in vrna_md_defaults_energy_set()
635 return defaults.energy_set; in vrna_md_defaults_energy_set_get()
854 switch (md->energy_set) { in fill_pair_matrices()
908 md->energy_set); in fill_pair_matrices()
909 md->energy_set = 0; in fill_pair_matrices()
[all …]
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| H A D | model.h | 216 …int energy_set; /**< @brief Specifies the energy set that defines set … member
846 extern int energy_set;
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| H A D | alphabet.c | 320 if (md->energy_set > 0) { in vrna_nucleotide_encode()
347 if (md->energy_set > 0) in vrna_nucleotide_decode()
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| /dports/games/openrct2/OpenRCT2-0.3.5.1/src/openrct2/scripting/bindings/entity/ |
| H A D | ScPeep.hpp | 60 dukglue_register_property(ctx, &ScPeep::energy_get, &ScPeep::energy_set, "energy"); in Register()
146 void energy_set(uint8_t value) in energy_set() function in OpenRCT2::Scripting::ScPeep
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| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Python3/ |
| H A D | globals-md.i | 127 %typemap(varin) int energy_set {
131 %typemap(varout) int energy_set {
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| H A D | RNA.py | 1805 energy_set = property(_RNA.md_energy_set_get, _RNA.md_energy_set_set) variable in md
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| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Python/ |
| H A D | globals-md.i | 127 %typemap(varin) int energy_set {
131 %typemap(varout) int energy_set {
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| H A D | RNA.py | 1805 energy_set = property(_RNA.md_energy_set_get, _RNA.md_energy_set_set) variable in md
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| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Perl/ |
| H A D | globals-md.i | 126 %typemap(varin) int energy_set {
130 %typemap(varout) int energy_set {
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| H A D | RNA.pm | 3171 *energy_set = *RNAc::energy_set;
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| H A D | RNA.pod | 306 =item $energy_set [int]
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| /dports/biology/viennarna/ViennaRNA-2.4.18/src/bin/ |
| H A D | gengetopt_helper.h | 49 energy_set = (int)dest; \
155 ggo_get_energyModel(ggostruct, md.energy_set); \
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| H A D | RNApdist.c | 301 md->energy_set = energy_set = args_info.energyModel_arg; in command_line()
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| H A D | RNALfold.c | 166 md.energy_set = energy_set = args_info.energyModel_arg; in main()
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| H A D | RNApvmin.c | 164 md.energy_set = args_info.energyModel_arg; in main()
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| H A D | RNAinverse.c | 94 energy_set = args_info.energyModel_arg; in main()
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| H A D | RNAplfold.c | 230 md.energy_set = energy_set = args_info.energyModel_arg; in main()
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| H A D | RNApaln.c | 312 energy_set = args_info.energyModel_arg; in command_line()
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| H A D | RNAup.c | 213 energy_set = args_info.energyModel_arg; in main()
215 vrna_strcat_printf(&cmdl_parameters, "-e %d ", energy_set); in main()
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| /dports/biology/viennarna/ViennaRNA-2.4.18/tests/ |
| H A D | utils.c | 46 details.energy_set = 1; in START_TEST()
83 details.energy_set = 1; in START_TEST()
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| H A D | utils.ts | 38 details.energy_set = 1;
70 details.energy_set = 1;
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| /dports/biology/viennarna/ViennaRNA-2.4.18/man/ |
| H A D | RNAlib.texi | 662 @deftypevar int energy_set
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