Searched refs:ensFeatureGetSlice (Results 1 – 11 of 11) sorted by relevance
/dports/biology/emboss/EMBOSS-6.6.0/ajax/ensembl/ |
H A D | ensalign.c | 412 if (ensFeatureGetSlice(csf) && in basealignfeatureParseFeaturepairs() 413 ensFeatureGetSlice(fsf) && in basealignfeatureParseFeaturepairs() 414 (!ensSliceMatch(ensFeatureGetSlice(csf), in basealignfeatureParseFeaturepairs() 415 ensFeatureGetSlice(fsf)))) in basealignfeatureParseFeaturepairs() 433 if (ensFeatureGetSlice(ctf) && in basealignfeatureParseFeaturepairs() 434 ensFeatureGetSlice(ftf) && in basealignfeatureParseFeaturepairs() 435 (!ensSliceMatch(ensFeatureGetSlice(ctf), in basealignfeatureParseFeaturepairs() 436 ensFeatureGetSlice(ftf)))) in basealignfeatureParseFeaturepairs() 4587 eslice = ensFeatureGetSlice(efeature); in ensSupportingfeatureadaptorFetchAllbyExon() 4728 tslice = ensFeatureGetSlice(tfeature); in ensSupportingfeatureadaptorFetchAllbyTranscript()
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H A D | ensintron.c | 296 slice1 = ensFeatureGetSlice(feature1); in ensIntronNewIni() 297 slice2 = ensFeatureGetSlice(feature2); in ensIntronNewIni() 673 slice = ensFeatureGetSlice(intron->Feature); in ensIntronSetFeature() 721 ensFeatureGetSlice(intron->Feature)); in ensIntronSetNextexon() 762 ensFeatureGetSlice(intron->Feature)); in ensIntronSetPreviousexon()
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H A D | ensprediction.c | 1280 slice = ensFeatureGetSlice(feature); in ensPredictionexonFetchSequenceStr() 2213 tslice = ensFeatureGetSlice(tfeature); in ensPredictionexonadaptorFetchAllbyPredictiontranscript() 2949 slice = ensFeatureGetSlice(pt->Feature); in ensPredictiontranscriptSetFeature() 3657 slice = ensFeatureGetSlice(pt->Feature); in ensPredictiontranscriptFetchSequenceTranslationStr()
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H A D | enstranscript.c | 2387 slice = ensFeatureGetSlice(transcript->Feature); in ensTranscriptSetFeature() 3624 slice = ensFeatureGetSlice(efeature); in ensTranscriptCalculateCoordinates() 3654 if (!ensSliceMatch(ensFeatureGetSlice(efeature), slice)) in ensTranscriptCalculateCoordinates() 4856 ensFeatureGetSlice(newef), in ensTranscriptTransform() 5431 ensFeatureGetSlice(feature), in ensTranscriptFetchFeatureUtrfive() 5500 ensFeatureGetSlice(feature), in ensTranscriptFetchFeatureUtrthree() 5960 slice = ensFeatureGetSlice(transcript->Feature); in ensTranscriptFetchSequenceTranslationStr() 6310 ensFeatureGetSlice(transcript->Feature)); in ensTranscriptMapperInit() 6322 slice = ensFeatureGetSlice(feature); in ensTranscriptMapperInit() 6706 slice = ensFeatureGetSlice(transcript->Feature); in ensTranscriptMapperSliceTotranscript() [all …]
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H A D | ensexon.c | 1938 eslice = ensFeatureGetSlice(exon->Feature); in ensExonSetFeature() 2995 slice = ensFeatureGetSlice(feature); in ensExonFetchSequenceSliceStr() 3367 tslice = ensFeatureGetSlice(tfeature); in ensExonFetchSequenceTranslationStr() 4910 tslice = ensFeatureGetSlice(tfeature); in ensExonadaptorFetchAllbyTranscript()
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H A D | ensgene.c | 1749 slice = ensFeatureGetSlice(gene->Feature); in ensGeneSetFeature() 2299 slice = ensFeatureGetSlice(tfeature); in ensGeneCalculateCoordinates() 2332 if (!ensSliceMatch(ensFeatureGetSlice(tfeature), slice)) in ensGeneCalculateCoordinates() 3295 ensFeatureGetSlice(newtf), in ensGeneTransform() 5549 ensSliceIsNonreference(ensFeatureGetSlice(ensGeneGetFeature(gene)), in ensGeneadaptorFetchByDisplaylabel()
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H A D | ensfeature.h | 205 EnsPSlice ensFeatureGetSlice(const EnsPFeature feature);
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H A D | ensfeature.c | 668 EnsPSlice ensFeatureGetSlice(const EnsPFeature feature) in ensFeatureGetSlice() function 4445 if (ensSliceMatch(ensFeatureGetSlice(feature), slice)) in featureadaptorRemap() 9034 if (ensSliceMatch(ensFeatureGetSlice(feature), slice)) in assemblyexceptionfeatureadaptorRemap()
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H A D | ensslice.c | 5372 slice = ensFeatureGetSlice(feature); in ensSliceadaptorFetchByFeature()
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H A D | ensgvvariation.c | 8119 slice = ensFeatureGetSlice(gvvf->Feature); in ensGvvariationfeatureIsReference()
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/dports/biology/emboss/EMBOSS-6.6.0/emboss/ |
H A D | ensembltest.c | 452 slice = ensFeatureGetSlice(feature); in ensembltest_document_feature() 1896 ensSliceFetchName(ensFeatureGetSlice(feature), &fslname); in ensembltest_marker() 3504 ensSliceFetchName(ensFeatureGetSlice(feature), &slname); in ensembltest_transcript() 3587 ensSliceFetchName(ensFeatureGetSlice(feature), &slname); in ensembltest_transcript() 3765 ensSliceFetchName(ensFeatureGetSlice(feature), &fslname); in ensembltest_transformations() 3800 ensSliceFetchName(ensFeatureGetSlice(feature), &fslname); in ensembltest_transformations() 4017 ensSliceFetchName(ensFeatureGetSlice(feature), &fslname); in ensembltest_density() 4191 ensSliceFetchName(ensFeatureGetSlice(feature), &fslname); in ensembltest_miscellaneous()
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