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Searched refs:ensFeatureGetSlice (Results 1 – 11 of 11) sorted by relevance

/dports/biology/emboss/EMBOSS-6.6.0/ajax/ensembl/
H A Densalign.c412 if (ensFeatureGetSlice(csf) && in basealignfeatureParseFeaturepairs()
413 ensFeatureGetSlice(fsf) && in basealignfeatureParseFeaturepairs()
414 (!ensSliceMatch(ensFeatureGetSlice(csf), in basealignfeatureParseFeaturepairs()
415 ensFeatureGetSlice(fsf)))) in basealignfeatureParseFeaturepairs()
433 if (ensFeatureGetSlice(ctf) && in basealignfeatureParseFeaturepairs()
434 ensFeatureGetSlice(ftf) && in basealignfeatureParseFeaturepairs()
435 (!ensSliceMatch(ensFeatureGetSlice(ctf), in basealignfeatureParseFeaturepairs()
436 ensFeatureGetSlice(ftf)))) in basealignfeatureParseFeaturepairs()
4587 eslice = ensFeatureGetSlice(efeature); in ensSupportingfeatureadaptorFetchAllbyExon()
4728 tslice = ensFeatureGetSlice(tfeature); in ensSupportingfeatureadaptorFetchAllbyTranscript()
H A Densintron.c296 slice1 = ensFeatureGetSlice(feature1); in ensIntronNewIni()
297 slice2 = ensFeatureGetSlice(feature2); in ensIntronNewIni()
673 slice = ensFeatureGetSlice(intron->Feature); in ensIntronSetFeature()
721 ensFeatureGetSlice(intron->Feature)); in ensIntronSetNextexon()
762 ensFeatureGetSlice(intron->Feature)); in ensIntronSetPreviousexon()
H A Densprediction.c1280 slice = ensFeatureGetSlice(feature); in ensPredictionexonFetchSequenceStr()
2213 tslice = ensFeatureGetSlice(tfeature); in ensPredictionexonadaptorFetchAllbyPredictiontranscript()
2949 slice = ensFeatureGetSlice(pt->Feature); in ensPredictiontranscriptSetFeature()
3657 slice = ensFeatureGetSlice(pt->Feature); in ensPredictiontranscriptFetchSequenceTranslationStr()
H A Denstranscript.c2387 slice = ensFeatureGetSlice(transcript->Feature); in ensTranscriptSetFeature()
3624 slice = ensFeatureGetSlice(efeature); in ensTranscriptCalculateCoordinates()
3654 if (!ensSliceMatch(ensFeatureGetSlice(efeature), slice)) in ensTranscriptCalculateCoordinates()
4856 ensFeatureGetSlice(newef), in ensTranscriptTransform()
5431 ensFeatureGetSlice(feature), in ensTranscriptFetchFeatureUtrfive()
5500 ensFeatureGetSlice(feature), in ensTranscriptFetchFeatureUtrthree()
5960 slice = ensFeatureGetSlice(transcript->Feature); in ensTranscriptFetchSequenceTranslationStr()
6310 ensFeatureGetSlice(transcript->Feature)); in ensTranscriptMapperInit()
6322 slice = ensFeatureGetSlice(feature); in ensTranscriptMapperInit()
6706 slice = ensFeatureGetSlice(transcript->Feature); in ensTranscriptMapperSliceTotranscript()
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H A Densexon.c1938 eslice = ensFeatureGetSlice(exon->Feature); in ensExonSetFeature()
2995 slice = ensFeatureGetSlice(feature); in ensExonFetchSequenceSliceStr()
3367 tslice = ensFeatureGetSlice(tfeature); in ensExonFetchSequenceTranslationStr()
4910 tslice = ensFeatureGetSlice(tfeature); in ensExonadaptorFetchAllbyTranscript()
H A Densgene.c1749 slice = ensFeatureGetSlice(gene->Feature); in ensGeneSetFeature()
2299 slice = ensFeatureGetSlice(tfeature); in ensGeneCalculateCoordinates()
2332 if (!ensSliceMatch(ensFeatureGetSlice(tfeature), slice)) in ensGeneCalculateCoordinates()
3295 ensFeatureGetSlice(newtf), in ensGeneTransform()
5549 ensSliceIsNonreference(ensFeatureGetSlice(ensGeneGetFeature(gene)), in ensGeneadaptorFetchByDisplaylabel()
H A Densfeature.h205 EnsPSlice ensFeatureGetSlice(const EnsPFeature feature);
H A Densfeature.c668 EnsPSlice ensFeatureGetSlice(const EnsPFeature feature) in ensFeatureGetSlice() function
4445 if (ensSliceMatch(ensFeatureGetSlice(feature), slice)) in featureadaptorRemap()
9034 if (ensSliceMatch(ensFeatureGetSlice(feature), slice)) in assemblyexceptionfeatureadaptorRemap()
H A Densslice.c5372 slice = ensFeatureGetSlice(feature); in ensSliceadaptorFetchByFeature()
H A Densgvvariation.c8119 slice = ensFeatureGetSlice(gvvf->Feature); in ensGvvariationfeatureIsReference()
/dports/biology/emboss/EMBOSS-6.6.0/emboss/
H A Densembltest.c452 slice = ensFeatureGetSlice(feature); in ensembltest_document_feature()
1896 ensSliceFetchName(ensFeatureGetSlice(feature), &fslname); in ensembltest_marker()
3504 ensSliceFetchName(ensFeatureGetSlice(feature), &slname); in ensembltest_transcript()
3587 ensSliceFetchName(ensFeatureGetSlice(feature), &slname); in ensembltest_transcript()
3765 ensSliceFetchName(ensFeatureGetSlice(feature), &fslname); in ensembltest_transformations()
3800 ensSliceFetchName(ensFeatureGetSlice(feature), &fslname); in ensembltest_transformations()
4017 ensSliceFetchName(ensFeatureGetSlice(feature), &fslname); in ensembltest_density()
4191 ensSliceFetchName(ensFeatureGetSlice(feature), &fslname); in ensembltest_miscellaneous()