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Searched refs:ensFeatureGetStrand (Results 1 – 9 of 9) sorted by relevance

/dports/biology/emboss/EMBOSS-6.6.0/ajax/ensembl/
H A Densalign.c356 if (ensFeatureGetStrand(fsf) >= 0) in basealignfeatureParseFeaturepairs()
374 if (ensFeatureGetStrand(fsf) >= 0) in basealignfeatureParseFeaturepairs()
385 if (ensFeatureGetStrand(ftf) >= 0) in basealignfeatureParseFeaturepairs()
428 if (ensFeatureGetStrand(csf) != ensFeatureGetStrand(fsf)) in basealignfeatureParseFeaturepairs()
449 if (ensFeatureGetStrand(ctf) != ensFeatureGetStrand(ftf)) in basealignfeatureParseFeaturepairs()
479 if (ensFeatureGetStrand(csf) >= 0) in basealignfeatureParseFeaturepairs()
541 if (ensFeatureGetStrand(fsf) >= 0) in basealignfeatureParseFeaturepairs()
592 if (ensFeatureGetStrand(ctf) >= 0) in basealignfeatureParseFeaturepairs()
H A Densexon.c354 ensFeatureGetStrand(exon->Feature), in ensExoncoordinatesNewIni()
3045 ensFeatureGetStrand(feature), in ensExonFetchSequenceSliceStr()
3051 ensFeatureGetStrand(feature), in ensExonFetchSequenceSliceStr()
3054 if (ensFeatureGetStrand(feature) >= 0) in ensExonFetchSequenceSliceStr()
3090 ensFeatureGetStrand(feature), in ensExonFetchSequenceSliceStr()
3096 ensFeatureGetStrand(feature), in ensExonFetchSequenceSliceStr()
3099 if (ensFeatureGetStrand(feature) >= 0) in ensExonFetchSequenceSliceStr()
3120 ensFeatureGetStrand(feature), in ensExonFetchSequenceSliceStr()
3128 ensFeatureGetStrand(feature), in ensExonFetchSequenceSliceStr()
3381 ensFeatureGetStrand(nexon->Feature), in ensExonFetchSequenceTranslationStr()
H A Densintron.c328 if (ensFeatureGetStrand(feature1) != ensFeatureGetStrand(feature2)) in ensIntronNewIni()
336 if (ensFeatureGetStrand(feature1) >= 0) in ensIntronNewIni()
355 strand = ensFeatureGetStrand(feature1); in ensIntronNewIni()
2094 if (ensFeatureGetStrand(ifeature) >= 0) in ensIntronsupportingevidenceFetchExons()
H A Denstranscript.c3042 if (ensFeatureGetStrand(feature) > 0) in ensTranscriptAddExon()
3185 ensFeatureGetStrand(feature)); in ensTranscriptAddExon()
3627 strand = ensFeatureGetStrand(efeature); in ensTranscriptCalculateCoordinates()
3666 if (ensFeatureGetStrand(efeature) != strand) in ensTranscriptCalculateCoordinates()
4039 if (ensFeatureGetStrand(feature) >= 0) in ensTranscriptCalculateSliceCodingEnd()
4100 if (ensFeatureGetStrand(feature) >= 0) in ensTranscriptCalculateSliceCodingStart()
5417 if (ensFeatureGetStrand(feature) >= 0) in ensTranscriptFetchFeatureUtrfive()
5434 ensFeatureGetStrand(feature)); in ensTranscriptFetchFeatureUtrfive()
5486 if (ensFeatureGetStrand(feature) >= 0) in ensTranscriptFetchFeatureUtrthree()
5503 ensFeatureGetStrand(feature)); in ensTranscriptFetchFeatureUtrthree()
[all …]
H A Densfeature.h209 ajint ensFeatureGetStrand(const EnsPFeature feature);
H A Densgene.c2305 strand = ensFeatureGetStrand(tfeature); in ensGeneCalculateCoordinates()
2345 if (ensFeatureGetStrand(tfeature) != strand) in ensGeneCalculateCoordinates()
3298 ensFeatureGetStrand(newtf)); in ensGeneTransform()
H A Denstranslation.c2204 if (ensFeatureGetStrand(feature) >= 0) in ensTranslationCalculateSliceEnd()
2251 if (ensFeatureGetStrand(feature) >= 0) in ensTranslationCalculateSliceStart()
H A Densfeature.c710 ajint ensFeatureGetStrand(const EnsPFeature feature) in ensFeatureGetStrand() function
7004 ensFeatureGetStrand(fp->SourceFeature) : 0; in ensFeaturepairGetSourceStrand()
7064 ensFeatureGetStrand(fp->TargetFeature) : 0; in ensFeaturepairGetTargetStrand()
/dports/biology/emboss/EMBOSS-6.6.0/emboss/
H A Densembltest.c470 ensFeatureGetStrand(feature), in ensembltest_document_feature()
802 ensFeatureGetStrand(trgfeature)); in ensembltest_basealignfeature()
3606 ensFeatureGetStrand(feature), in ensembltest_transcript()
3777 ensFeatureGetStrand(feature), in ensembltest_transformations()
3812 ensFeatureGetStrand(feature), in ensembltest_transformations()
4031 ensFeatureGetStrand(feature), in ensembltest_density()
4202 ensFeatureGetStrand(feature), in ensembltest_miscellaneous()