Searched refs:ensFeatureGetStrand (Results 1 – 9 of 9) sorted by relevance
/dports/biology/emboss/EMBOSS-6.6.0/ajax/ensembl/ |
H A D | ensalign.c | 356 if (ensFeatureGetStrand(fsf) >= 0) in basealignfeatureParseFeaturepairs() 374 if (ensFeatureGetStrand(fsf) >= 0) in basealignfeatureParseFeaturepairs() 385 if (ensFeatureGetStrand(ftf) >= 0) in basealignfeatureParseFeaturepairs() 428 if (ensFeatureGetStrand(csf) != ensFeatureGetStrand(fsf)) in basealignfeatureParseFeaturepairs() 449 if (ensFeatureGetStrand(ctf) != ensFeatureGetStrand(ftf)) in basealignfeatureParseFeaturepairs() 479 if (ensFeatureGetStrand(csf) >= 0) in basealignfeatureParseFeaturepairs() 541 if (ensFeatureGetStrand(fsf) >= 0) in basealignfeatureParseFeaturepairs() 592 if (ensFeatureGetStrand(ctf) >= 0) in basealignfeatureParseFeaturepairs()
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H A D | ensexon.c | 354 ensFeatureGetStrand(exon->Feature), in ensExoncoordinatesNewIni() 3045 ensFeatureGetStrand(feature), in ensExonFetchSequenceSliceStr() 3051 ensFeatureGetStrand(feature), in ensExonFetchSequenceSliceStr() 3054 if (ensFeatureGetStrand(feature) >= 0) in ensExonFetchSequenceSliceStr() 3090 ensFeatureGetStrand(feature), in ensExonFetchSequenceSliceStr() 3096 ensFeatureGetStrand(feature), in ensExonFetchSequenceSliceStr() 3099 if (ensFeatureGetStrand(feature) >= 0) in ensExonFetchSequenceSliceStr() 3120 ensFeatureGetStrand(feature), in ensExonFetchSequenceSliceStr() 3128 ensFeatureGetStrand(feature), in ensExonFetchSequenceSliceStr() 3381 ensFeatureGetStrand(nexon->Feature), in ensExonFetchSequenceTranslationStr()
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H A D | ensintron.c | 328 if (ensFeatureGetStrand(feature1) != ensFeatureGetStrand(feature2)) in ensIntronNewIni() 336 if (ensFeatureGetStrand(feature1) >= 0) in ensIntronNewIni() 355 strand = ensFeatureGetStrand(feature1); in ensIntronNewIni() 2094 if (ensFeatureGetStrand(ifeature) >= 0) in ensIntronsupportingevidenceFetchExons()
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H A D | enstranscript.c | 3042 if (ensFeatureGetStrand(feature) > 0) in ensTranscriptAddExon() 3185 ensFeatureGetStrand(feature)); in ensTranscriptAddExon() 3627 strand = ensFeatureGetStrand(efeature); in ensTranscriptCalculateCoordinates() 3666 if (ensFeatureGetStrand(efeature) != strand) in ensTranscriptCalculateCoordinates() 4039 if (ensFeatureGetStrand(feature) >= 0) in ensTranscriptCalculateSliceCodingEnd() 4100 if (ensFeatureGetStrand(feature) >= 0) in ensTranscriptCalculateSliceCodingStart() 5417 if (ensFeatureGetStrand(feature) >= 0) in ensTranscriptFetchFeatureUtrfive() 5434 ensFeatureGetStrand(feature)); in ensTranscriptFetchFeatureUtrfive() 5486 if (ensFeatureGetStrand(feature) >= 0) in ensTranscriptFetchFeatureUtrthree() 5503 ensFeatureGetStrand(feature)); in ensTranscriptFetchFeatureUtrthree() [all …]
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H A D | ensfeature.h | 209 ajint ensFeatureGetStrand(const EnsPFeature feature);
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H A D | ensgene.c | 2305 strand = ensFeatureGetStrand(tfeature); in ensGeneCalculateCoordinates() 2345 if (ensFeatureGetStrand(tfeature) != strand) in ensGeneCalculateCoordinates() 3298 ensFeatureGetStrand(newtf)); in ensGeneTransform()
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H A D | enstranslation.c | 2204 if (ensFeatureGetStrand(feature) >= 0) in ensTranslationCalculateSliceEnd() 2251 if (ensFeatureGetStrand(feature) >= 0) in ensTranslationCalculateSliceStart()
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H A D | ensfeature.c | 710 ajint ensFeatureGetStrand(const EnsPFeature feature) in ensFeatureGetStrand() function 7004 ensFeatureGetStrand(fp->SourceFeature) : 0; in ensFeaturepairGetSourceStrand() 7064 ensFeatureGetStrand(fp->TargetFeature) : 0; in ensFeaturepairGetTargetStrand()
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/dports/biology/emboss/EMBOSS-6.6.0/emboss/ |
H A D | ensembltest.c | 470 ensFeatureGetStrand(feature), in ensembltest_document_feature() 802 ensFeatureGetStrand(trgfeature)); in ensembltest_basealignfeature() 3606 ensFeatureGetStrand(feature), in ensembltest_transcript() 3777 ensFeatureGetStrand(feature), in ensembltest_transformations() 3812 ensFeatureGetStrand(feature), in ensembltest_transformations() 4031 ensFeatureGetStrand(feature), in ensembltest_density() 4202 ensFeatureGetStrand(feature), in ensembltest_miscellaneous()
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