| /dports/biology/infernal/infernal-1.1.3/easel/ |
| H A D | esl_msafile_phylip.c | 1607 int expected_nseq; in utest_seqboot() local
1620 utest_write_good1(ofp, &expected_fmt, &expected_alphatype, &expected_nseq, &expected_alen); in utest_seqboot()
1631 if (msa->nseq != expected_nseq) esl_fatal(msg); in utest_seqboot()
1688 int expected_nseq; in main() local
1698 …case 1: utest_write_good1 (ofp, &expected_format, &expected_alphatype, &expected_nseq, &expected… in main()
1699 …case 2: utest_write_good2 (ofp, &expected_format, &expected_alphatype, &expected_nseq, &expected… in main()
1700 …case 3: utest_write_good3 (ofp, &expected_format, &expected_alphatype, &expected_nseq, &expected… in main()
1701 …case 4: utest_write_good4 (ofp, &expected_format, &expected_alphatype, &expected_nseq, &expected… in main()
1702 …case 5: utest_write_good5 (ofp, &expected_format, &expected_alphatype, &expected_nseq, &expected… in main()
1703 …case 6: utest_write_good6 (ofp, &expected_format, &expected_alphatype, &expected_nseq, &expected… in main()
[all …]
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| H A D | esl_msafile_psiblast.c | 438 utest_goodfile(char *filename, int testnumber, int expected_alphatype, int expected_nseq, int expec… in utest_goodfile() argument
458 …if (msa1->nseq != expected_nseq || msa1->alen != expected_alen) esl_fatal("psiblast good file te… in utest_goodfile()
470 …if (msa2->nseq != expected_nseq || msa2->alen != expected_alen) … in utest_goodfile()
658 int expected_nseq; in main() local
676 case 1: utest_write_good1 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
677 case 2: utest_write_good2 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
680 utest_goodfile(tmpfile, testnumber, expected_alphatype, expected_nseq, expected_alen); in main()
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| H A D | esl_msafile_afa.c | 345 utest_goodfile(char *filename, int testnumber, int expected_alphatype, int expected_nseq, int expec… in utest_goodfile() argument
363 …if (msa1->nseq != expected_nseq || msa1->alen != expected_alen) esl_fatal("afa good file test %d … in utest_goodfile()
376 …if (msa2->nseq != expected_nseq || msa2->alen != expected_alen) esl_f… in utest_goodfile()
570 int expected_nseq; in main() local
589 case 1: utest_write_good1 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
592 utest_goodfile(tmpfile, testnumber, expected_alphatype, expected_nseq, expected_alen); in main()
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| H A D | esl_msafile_clustal.c | 678 …ame, int testnumber, int expected_format, int expected_alphatype, int expected_nseq, int expected_… in utest_goodfile() argument
696 …if (msa1->nseq != expected_nseq || msa1->alen != expected_alen) esl_fatal("clustal good file test… in utest_goodfile()
708 …if (msa2->nseq != expected_nseq || msa2->alen != expected_alen) esl_… in utest_goodfile()
904 int expected_nseq; in main() local
922 …case 1: utest_write_good1 (ofp, &expected_format, &expected_alphatype, &expected_nseq, &expected… in main()
923 …case 2: utest_write_good2 (ofp, &expected_format, &expected_alphatype, &expected_nseq, &expected… in main()
924 …case 3: utest_write_good3 (ofp, &expected_format, &expected_alphatype, &expected_nseq, &expected… in main()
927 …utest_goodfile(tmpfile, testnumber, expected_format, expected_alphatype, expected_nseq, expected_a… in main()
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| H A D | esl_msafile_selex.c | 863 utest_goodfile(char *filename, int testnumber, int expected_alphatype, int expected_nseq, int expec… in utest_goodfile() argument
881 …if (msa1->nseq != expected_nseq || msa1->alen != expected_alen) esl_fatal("selex good file test %d… in utest_goodfile()
893 …if (msa2->nseq != expected_nseq || msa2->alen != expected_alen) esl… in utest_goodfile()
1085 int expected_nseq; in main() local
1103 case 1: utest_write_good1 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
1104 case 2: utest_write_good2 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
1105 case 3: utest_write_good3 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
1106 case 4: utest_write_good4 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
1109 utest_goodfile(tmpfile, testnumber, expected_alphatype, expected_nseq, expected_alen); in main()
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| H A D | esl_msafile_a2m.c | 689 utest_goodfile(char *filename, int testnumber, int expected_alphatype, int expected_nseq, int expec… in utest_goodfile() argument
707 …if (msa1->nseq != expected_nseq || msa1->alen != expected_alen) esl_fatal("a2m good file test %d … in utest_goodfile()
719 …if (msa2->nseq != expected_nseq || msa2->alen != expected_alen) esl_f… in utest_goodfile()
952 int expected_nseq; in main() local
973 case 1: utest_write_good1 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
974 case 2: utest_write_good2 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
977 utest_goodfile(tmpfile, testnumber, expected_alphatype, expected_nseq, expected_alen); in main()
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| H A D | esl_msafile_stockholm.c | 2289 utest_goodfile(char *filename, int testnumber, int expected_alphatype, int expected_nseq, int expec… in utest_goodfile() argument
2307 …if (msa1->nseq != expected_nseq || msa1->alen != expected_alen) esl_fatal("stockholm good file … in utest_goodfile()
2319 …if (msa2->nseq != expected_nseq || msa2->alen != expected_alen) … in utest_goodfile()
2365 utest_good_format(ESL_ALPHABET **byp_abc, int fmt, int expected_nseq, int64_t expected_alen, char *… in utest_good_format() argument
2373 if (msa->nseq != expected_nseq) esl_fatal(msg); in utest_good_format()
2482 int expected_nseq; in main() local
2502 case 1: utest_write_good1 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
2505 utest_goodfile(tmpfile, testnumber, expected_alphatype, expected_nseq, expected_alen); in main()
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| /dports/biology/hmmer/hmmer-3.3/easel/ |
| H A D | esl_msafile_phylip.c | 1607 int expected_nseq; in utest_seqboot() local
1620 utest_write_good1(ofp, &expected_fmt, &expected_alphatype, &expected_nseq, &expected_alen); in utest_seqboot()
1631 if (msa->nseq != expected_nseq) esl_fatal(msg); in utest_seqboot()
1688 int expected_nseq; in main() local
1698 …case 1: utest_write_good1 (ofp, &expected_format, &expected_alphatype, &expected_nseq, &expected… in main()
1699 …case 2: utest_write_good2 (ofp, &expected_format, &expected_alphatype, &expected_nseq, &expected… in main()
1700 …case 3: utest_write_good3 (ofp, &expected_format, &expected_alphatype, &expected_nseq, &expected… in main()
1701 …case 4: utest_write_good4 (ofp, &expected_format, &expected_alphatype, &expected_nseq, &expected… in main()
1702 …case 5: utest_write_good5 (ofp, &expected_format, &expected_alphatype, &expected_nseq, &expected… in main()
1703 …case 6: utest_write_good6 (ofp, &expected_format, &expected_alphatype, &expected_nseq, &expected… in main()
[all …]
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| H A D | esl_msafile_psiblast.c | 438 utest_goodfile(char *filename, int testnumber, int expected_alphatype, int expected_nseq, int expec… in utest_goodfile() argument
458 …if (msa1->nseq != expected_nseq || msa1->alen != expected_alen) esl_fatal("psiblast good file te… in utest_goodfile()
470 …if (msa2->nseq != expected_nseq || msa2->alen != expected_alen) … in utest_goodfile()
658 int expected_nseq; in main() local
676 case 1: utest_write_good1 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
677 case 2: utest_write_good2 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
680 utest_goodfile(tmpfile, testnumber, expected_alphatype, expected_nseq, expected_alen); in main()
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| H A D | esl_msafile_afa.c | 345 utest_goodfile(char *filename, int testnumber, int expected_alphatype, int expected_nseq, int expec… in utest_goodfile() argument
363 …if (msa1->nseq != expected_nseq || msa1->alen != expected_alen) esl_fatal("afa good file test %d … in utest_goodfile()
376 …if (msa2->nseq != expected_nseq || msa2->alen != expected_alen) esl_f… in utest_goodfile()
570 int expected_nseq; in main() local
589 case 1: utest_write_good1 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
592 utest_goodfile(tmpfile, testnumber, expected_alphatype, expected_nseq, expected_alen); in main()
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| H A D | esl_msafile_clustal.c | 678 …ame, int testnumber, int expected_format, int expected_alphatype, int expected_nseq, int expected_… in utest_goodfile() argument
696 …if (msa1->nseq != expected_nseq || msa1->alen != expected_alen) esl_fatal("clustal good file test… in utest_goodfile()
708 …if (msa2->nseq != expected_nseq || msa2->alen != expected_alen) esl_… in utest_goodfile()
904 int expected_nseq; in main() local
922 …case 1: utest_write_good1 (ofp, &expected_format, &expected_alphatype, &expected_nseq, &expected… in main()
923 …case 2: utest_write_good2 (ofp, &expected_format, &expected_alphatype, &expected_nseq, &expected… in main()
924 …case 3: utest_write_good3 (ofp, &expected_format, &expected_alphatype, &expected_nseq, &expected… in main()
927 …utest_goodfile(tmpfile, testnumber, expected_format, expected_alphatype, expected_nseq, expected_a… in main()
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| H A D | esl_msafile_selex.c | 863 utest_goodfile(char *filename, int testnumber, int expected_alphatype, int expected_nseq, int expec… in utest_goodfile() argument
881 …if (msa1->nseq != expected_nseq || msa1->alen != expected_alen) esl_fatal("selex good file test %d… in utest_goodfile()
893 …if (msa2->nseq != expected_nseq || msa2->alen != expected_alen) esl… in utest_goodfile()
1085 int expected_nseq; in main() local
1103 case 1: utest_write_good1 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
1104 case 2: utest_write_good2 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
1105 case 3: utest_write_good3 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
1106 case 4: utest_write_good4 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
1109 utest_goodfile(tmpfile, testnumber, expected_alphatype, expected_nseq, expected_alen); in main()
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| H A D | esl_msafile_a2m.c | 689 utest_goodfile(char *filename, int testnumber, int expected_alphatype, int expected_nseq, int expec… in utest_goodfile() argument
707 …if (msa1->nseq != expected_nseq || msa1->alen != expected_alen) esl_fatal("a2m good file test %d … in utest_goodfile()
719 …if (msa2->nseq != expected_nseq || msa2->alen != expected_alen) esl_f… in utest_goodfile()
952 int expected_nseq; in main() local
973 case 1: utest_write_good1 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
974 case 2: utest_write_good2 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
977 utest_goodfile(tmpfile, testnumber, expected_alphatype, expected_nseq, expected_alen); in main()
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| H A D | esl_msafile_stockholm.c | 2289 utest_goodfile(char *filename, int testnumber, int expected_alphatype, int expected_nseq, int expec… in utest_goodfile() argument
2307 …if (msa1->nseq != expected_nseq || msa1->alen != expected_alen) esl_fatal("stockholm good file … in utest_goodfile()
2319 …if (msa2->nseq != expected_nseq || msa2->alen != expected_alen) … in utest_goodfile()
2365 utest_good_format(ESL_ALPHABET **byp_abc, int fmt, int expected_nseq, int64_t expected_alen, char *… in utest_good_format() argument
2373 if (msa->nseq != expected_nseq) esl_fatal(msg); in utest_good_format()
2482 int expected_nseq; in main() local
2502 case 1: utest_write_good1 (ofp, &expected_alphatype, &expected_nseq, &expected_alen); break; in main()
2505 utest_goodfile(tmpfile, testnumber, expected_alphatype, expected_nseq, expected_alen); in main()
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