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Searched refs:expinternal (Results 1 – 15 of 15) sorted by relevance

/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/
H A Dpf_fold.c355 z = pf_params->expinternal[5] * in expLoopEnergy()
361 z = pf_params->expinternal[u1 + u2] * in expLoopEnergy()
366 z = pf_params->expinternal[u1 + u2] * in expLoopEnergy()
H A Dgquad.h1525 expintern = &(pf->expinternal[0]); in exp_E_GQuad_IntLoop()
1631 expintern = &(pf->expinternal[0]); in exp_E_GQuad_IntLoop_comparative()
H A Dequilibrium_probs.c1950 double *expintern = &(pf_params->expinternal[0]);
2061 double *expintern = &(pf_params->expinternal[0]);
/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/params/
H A Dparams.c604 pf->expinternal[i] = RESCALE_BF(internal_loop37[i], internal_loopdH[i], TT, kT); in get_scaled_exp_params()
609 pf->expinternal[2] = exp(-80 * 10. / kT); in get_scaled_exp_params()
621 pf->expinternal[i] = exp(-TRUNC_MAYBE(GT + (pf->lxc * log(i / 30.))) * 10. / kT); in get_scaled_exp_params()
789 pf->expinternal[i] = RESCALE_BF(internal_loop37[i], internal_loopdH[i], TT, kTn); in get_exp_params_ali()
794 pf->expinternal[2] = exp(-80 * 10. / kTn); in get_exp_params_ali()
802 pf->expinternal[i] = exp(-(GT + (pf->lxc * log(i / 30.))) * 10. / kTn); in get_exp_params_ali()
H A Dbasic.h110 double expinternal[MAXLOOP + 1]; member
/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/loops/
H A Dinternal.h626 z = P->expinternal[ul + us] * P->expmismatch1nI[type][si1][sj1] * in exp_E_IntLoop()
636 z = P->expinternal[5] * P->expmismatch23I[type][si1][sj1] * in exp_E_IntLoop()
643 z = P->expinternal[ul + us] * P->expmismatchI[type][si1][sj1] * in exp_E_IntLoop()
/dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/
H A Dparams.i70 const double expinternal[MAXLOOP + 1]; member
/dports/biology/viennarna/ViennaRNA-2.4.18/doc/latex/
H A Dinternal_8h_source.tex502 \DoxyCodeLine{00626 z = P-\/>expinternal[ul + us] * P-\/>expmismatch1nI[type][si1][sj1] *}
512 \DoxyCodeLine{00636 z = P-\/>expinternal[5] * P-\/>expmismatch23I[type][si1][sj1] *}
519 \DoxyCodeLine{00643 z = P-\/>expinternal[ul + us] * P-\/>expmismatchI[type][si1][sj1] *}
H A Dparams_2basic_8h_source.tex84 \DoxyCodeLine{00110 \textcolor{keywordtype}{double} expinternal[\mbox{\hyperlink{constants_8h_ad…
H A Dgquad_8h_source.tex1456 \DoxyCodeLine{01525 expintern = \&(pf-\/>expinternal[0]);}
1562 \DoxyCodeLine{01631 expintern = \&(pf-\/>expinternal[0]);}
/dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Python/
H A DRNA.py1636 expinternal = property(_RNA.exp_param_expinternal_get) variable in exp_param
H A DRNA_wrap.cpp41819 result = (double *)(double *) ((arg1)->expinternal); in _wrap_exp_param_expinternal_get()
/dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Python3/
H A DRNA.py1636 expinternal = property(_RNA.exp_param_expinternal_get) variable in exp_param
H A DRNA_wrap.cpp41957 result = (double *)(double *) ((arg1)->expinternal); in _wrap_exp_param_expinternal_get()
/dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Perl/
H A DRNA_wrap.cpp21723 result = (double *)(double *) ((arg1)->expinternal); in XS()