| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/ |
| H A D | faidx.c | 50 } faidx1_t; typedef
51 KHASH_MAP_INIT_STR(s, faidx1_t)
75 faidx1_t *v = &kh_value(idx->hash, k); in fai_insert_index()
330 faidx1_t x; in fai_save()
688 static char *fai_retrieve(const faidx_t *fai, const faidx1_t *val, in fai_retrieve()
727 static int fai_get_val(const faidx_t *fai, const char *str, int *len, faidx1_t *val, long *fbeg, lo… in fai_get_val()
815 faidx1_t val; in fai_fetch()
828 faidx1_t val; in fai_fetchqual()
863 static int faidx_adjust_position(const faidx_t *fai, faidx1_t *val, const char *c_name, int *p_beg_… in faidx_adjust_position()
896 faidx1_t val; in faidx_fetch_seq()
[all …]
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/ |
| H A D | faidx.c | 52 } faidx1_t; typedef
53 KHASH_MAP_INIT_STR(s, faidx1_t)
80 faidx1_t *v = &kh_value(idx->hash, k); in fai_insert_index()
334 faidx1_t x; in fai_save()
692 static char *fai_retrieve(const faidx_t *fai, const faidx1_t *val, in fai_retrieve()
739 hts_pos_t *len, faidx1_t *val, hts_pos_t *fbeg, hts_pos_t *fend) { in fai_get_val()
772 faidx1_t val; in fai_fetch64()
792 faidx1_t val; in fai_fetchqual64()
832 static int faidx_adjust_position(const faidx_t *fai, faidx1_t *val, const char *c_name, hts_pos_t *… in faidx_adjust_position()
864 faidx1_t val; in faidx_fetch_seq64()
[all …]
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| /dports/biology/py-pysam/pysam-0.18.0/htslib/ |
| H A D | faidx.c | 52 } faidx1_t; typedef
53 KHASH_MAP_INIT_STR(s, faidx1_t)
80 faidx1_t *v = &kh_value(idx->hash, k); in fai_insert_index()
334 faidx1_t x; in fai_save()
692 static char *fai_retrieve(const faidx_t *fai, const faidx1_t *val, in fai_retrieve()
739 hts_pos_t *len, faidx1_t *val, hts_pos_t *fbeg, hts_pos_t *fend) { in fai_get_val()
772 faidx1_t val; in fai_fetch64()
792 faidx1_t val; in fai_fetchqual64()
832 static int faidx_adjust_position(const faidx_t *fai, faidx1_t *val, const char *c_name, hts_pos_t *… in faidx_adjust_position()
864 faidx1_t val; in faidx_fetch_seq64()
[all …]
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| /dports/biology/htslib/htslib-1.14/ |
| H A D | faidx.c | 52 } faidx1_t; typedef
53 KHASH_MAP_INIT_STR(s, faidx1_t)
80 faidx1_t *v = &kh_value(idx->hash, k); in fai_insert_index()
334 faidx1_t x; in fai_save()
692 static char *fai_retrieve(const faidx_t *fai, const faidx1_t *val, in fai_retrieve()
739 hts_pos_t *len, faidx1_t *val, hts_pos_t *fbeg, hts_pos_t *fend) { in fai_get_val()
772 faidx1_t val; in fai_fetch64()
792 faidx1_t val; in fai_fetchqual64()
832 static int faidx_adjust_position(const faidx_t *fai, faidx1_t *val, const char *c_name, hts_pos_t *… in faidx_adjust_position()
864 faidx1_t val; in faidx_fetch_seq64()
[all …]
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| /dports/biology/vt/vt-0.57721/lib/htslib/ |
| H A D | faidx.c | 49 } faidx1_t; typedef
50 KHASH_MAP_INIT_STR(s, faidx1_t)
73 faidx1_t *v = &kh_value(idx->hash, k); in fai_insert_index()
184 faidx1_t x; in fai_save()
419 static char *fai_retrieve(const faidx_t *fai, const faidx1_t *val, in fai_retrieve()
462 faidx1_t val; in fai_fetch()
567 faidx1_t val; in faidx_fetch_seq()
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| /dports/biology/stacks/stacks-2.4/htslib/ |
| H A D | faidx.c | 49 } faidx1_t; typedef
50 KHASH_MAP_INIT_STR(s, faidx1_t)
73 faidx1_t *v = &kh_value(idx->hash, k); in fai_insert_index()
184 faidx1_t x; in fai_save()
419 static char *fai_retrieve(const faidx_t *fai, const faidx1_t *val, in fai_retrieve()
462 faidx1_t val; in fai_fetch()
567 faidx1_t val; in faidx_fetch_seq()
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/ |
| H A D | faidx.c | 49 } faidx1_t; typedef
50 KHASH_MAP_INIT_STR(s, faidx1_t)
73 faidx1_t *v = &kh_value(idx->hash, k); in fai_insert_index()
184 faidx1_t x; in fai_save()
451 static char *fai_retrieve(const faidx_t *fai, const faidx1_t *val, in fai_retrieve()
497 faidx1_t val; in fai_fetch()
603 faidx1_t val; in faidx_fetch_seq()
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| /dports/biology/seqan1/seqan-1.3.1/lib/samtools/ |
| H A D | faidx.c | 11 } faidx1_t; typedef
12 KHASH_MAP_INIT_STR(s, faidx1_t)
50 faidx1_t t; in fai_insert_index()
142 faidx1_t x; in fai_save()
310 faidx1_t val; in fai_fetch()
396 faidx1_t val; in faidx_fetch_seq()
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| /dports/biology/ugene/ugene-40.1/src/libs_3rdparty/samtools/src/samtools/ |
| H A D | faidx.c | 13 } faidx1_t; typedef
14 KHASH_MAP_INIT_STR(s, faidx1_t)
52 faidx1_t t; in fai_insert_index()
144 faidx1_t x; in fai_save()
315 faidx1_t val; in fai_fetch()
413 faidx1_t val; in faidx_fetch_seq()
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| /dports/biology/stringtie/stringtie-2.1.1/samtools-0.1.18/ |
| H A D | faidx.c | 13 } faidx1_t; typedef
14 KHASH_MAP_INIT_STR(s, faidx1_t)
52 faidx1_t t; in fai_insert_index()
140 faidx1_t x; in fai_save()
308 faidx1_t val; in fai_fetch()
406 faidx1_t val; in faidx_fetch_seq()
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| /dports/biology/vt/vt-0.57721/ |
| H A D | hts_utils.h | 46 } faidx1_t; typedef
48 KHASH_MAP_INIT_STR(s, faidx1_t)
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| H A D | hts_utils.cpp | 46 faidx1_t val; in faidx_fetch_uc_seq()
|