Searched refs:feat_from (Results 1 – 7 of 7) sorted by relevance
346 TSeqPos feat_from = feat_range.GetFrom(); in x_GetStartOffset() local347 if (feat_from < from) { in x_GetStartOffset()349 return (from - feat_from); in x_GetStartOffset()351 return s_GetTrimmedLength(feat.GetLocation(), feat_from, from-1); in x_GetStartOffset()
1248 if (feat_from > cut_to) in SeqLocAdjustForTrim()1251 feat_from -= cut_size; in SeqLocAdjustForTrim()1253 interval.SetFrom(feat_from); in SeqLocAdjustForTrim()1283 if (feat_from >= cut_from) { in SeqLocAdjustForTrim()1288 feat_from = cut_to + 1; in SeqLocAdjustForTrim()1289 feat_from -= cut_size; in SeqLocAdjustForTrim()1292 interval.SetFrom(feat_from); in SeqLocAdjustForTrim()1569 if (feat_from > insert_from) { in SeqLocAdjustForInsert()1570 feat_from += insert_size; in SeqLocAdjustForInsert()1768 if (stop + 1 > feat_from) { in SplitLocationForGap()[all …]
2588 TSeqPos feat_from = interval->GetFrom(); in s_SeqIntervalDelete() local2602 if (feat_from >= cut_from && feat_to <= cut_to) in s_SeqIntervalDelete()2610 if (feat_from > cut_to) in s_SeqIntervalDelete()2613 feat_from -= cut_size; in s_SeqIntervalDelete()2615 interval->SetFrom(feat_from); in s_SeqIntervalDelete()2641 if (feat_from >= cut_from) { in s_SeqIntervalDelete()2642 feat_from = cut_to + 1; in s_SeqIntervalDelete()2643 feat_from -= cut_size; in s_SeqIntervalDelete()2646 interval->SetFrom(feat_from); in s_SeqIntervalDelete()
19915 Int4 from, to, feat_from, feat_to; in FindExonForInterval() local19948 feat_from = spp->point; in FindExonForInterval()19952 feat_from = sint->from; in FindExonForInterval()19960 } else if (match_from_exactly && feat_from != from) { in FindExonForInterval()19962 } else if (!match_from_exactly && (feat_from < from || feat_from > to)) { in FindExonForInterval()