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Searched refs:gf_tag (Results 1 – 25 of 27) sorted by relevance

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/dports/biology/clustal-omega/clustal-omega-1.2.4/src/squid/
H A Dmsa.c117 msa->gf_tag = NULL; in MSAAlloc()
274 Free2DArray((void **) msa->gf_tag, msa->ngf); in MSAFree()
394 if (msa->gf_tag == NULL) { in MSAAddGF()
395 msa->gf_tag = MallocOrDie (sizeof(char *) * 10); in MSAAddGF()
401 msa->gf_tag = ReallocOrDie(msa->gf_tag, sizeof(char *) * msa->alloc_ngf); in MSAAddGF()
405 msa->gf_tag[msa->ngf] = sre_strdup(tag, -1); in MSAAddGF()
H A Dmsa.h147 char **gf_tag; /* markup tags for unparsed #=GF lines */ member
H A Dstockholm.c366 fprintf(fp, "#=GF %-5s %s\n", msa->gf_tag[i], msa->gf[i]); in actually_write_stockholm()
/dports/biology/infernal/infernal-1.1.3/easel/miniapps/
H A Desl-alimerge.c822 …if(msaA[0]->gf_tag[j] == NULL) ESL_XFAIL(eslEINCONCEIVABLE, errbuf, "unexpectedly, GF tag %d of ms… in validate_and_copy_msa_annotation()
827 if(esl_strcmp(msaA[0]->gf_tag[j], msaA[ai]->gf_tag[j2]) == 0) { in validate_and_copy_msa_annotation()
829 if(esl_strcmp(msaA[0]->gf[j], msaA[ai]->gf_tag[j2]) != 0) { in validate_and_copy_msa_annotation()
836 … GF tag %s annotation from all alignments transferred to merged alignment.\n", msaA[0]->gf_tag[j]); in validate_and_copy_msa_annotation()
837 …if((status = esl_msa_AddGF(mmsa, msaA[0]->gf_tag[j], -1, msaA[0]->gf[j], -1)) != eslOK) goto ERRO… in validate_and_copy_msa_annotation()
840 …nment absent from >= 1 other alignments; not included in merged alignment.\n", msaA[0]->gf_tag[j]); in validate_and_copy_msa_annotation()
1721 maxgf = maxwidth(msa->gf_tag, msa->ngf); in write_pfam_msa_top()
1755 fprintf(fp, "#=GF %-*s %s\n", maxgf, msa->gf_tag[i], msa->gf[i]); in write_pfam_msa_top()
H A Desl-alimanip.c1175 if(msa->gf_tag[r] != NULL) free(msa->gf_tag[r]); in prune_msa_based_on_posteriors()
1178 if(msa->gf_tag != NULL) { free(msa->gf_tag); msa->gf_tag = NULL; } in prune_msa_based_on_posteriors()
2873 if(strcmp(minorA[m], msa->gf_tag[f]) == 0) { rf = msa->gf[f]; break; } in minorize_msa()
2875 …is of length %d but it must be equal to aln length (%" PRId64 ").", msa->gf_tag[f], (int) strlen(r… in minorize_msa()
2880 …he major alignment has a gap there! cmalign will choke on this.\n", msa->gf_tag[f], minor_msaA[m]-… in minorize_msa()
3078 esl_msa_AddGF(newmsa, msa->gf_tag[i], -1, msa->gf[i], -1); in add_gap_columns_to_msa()
/dports/biology/hmmer/hmmer-3.3/easel/miniapps/
H A Desl-alimerge.c822 …if(msaA[0]->gf_tag[j] == NULL) ESL_XFAIL(eslEINCONCEIVABLE, errbuf, "unexpectedly, GF tag %d of ms… in validate_and_copy_msa_annotation()
827 if(esl_strcmp(msaA[0]->gf_tag[j], msaA[ai]->gf_tag[j2]) == 0) { in validate_and_copy_msa_annotation()
829 if(esl_strcmp(msaA[0]->gf[j], msaA[ai]->gf_tag[j2]) != 0) { in validate_and_copy_msa_annotation()
836 … GF tag %s annotation from all alignments transferred to merged alignment.\n", msaA[0]->gf_tag[j]); in validate_and_copy_msa_annotation()
837 …if((status = esl_msa_AddGF(mmsa, msaA[0]->gf_tag[j], -1, msaA[0]->gf[j], -1)) != eslOK) goto ERRO… in validate_and_copy_msa_annotation()
840 …nment absent from >= 1 other alignments; not included in merged alignment.\n", msaA[0]->gf_tag[j]); in validate_and_copy_msa_annotation()
1721 maxgf = maxwidth(msa->gf_tag, msa->ngf); in write_pfam_msa_top()
1755 fprintf(fp, "#=GF %-*s %s\n", maxgf, msa->gf_tag[i], msa->gf[i]); in write_pfam_msa_top()
H A Desl-alimanip.c1175 if(msa->gf_tag[r] != NULL) free(msa->gf_tag[r]); in prune_msa_based_on_posteriors()
1178 if(msa->gf_tag != NULL) { free(msa->gf_tag); msa->gf_tag = NULL; } in prune_msa_based_on_posteriors()
2873 if(strcmp(minorA[m], msa->gf_tag[f]) == 0) { rf = msa->gf[f]; break; } in minorize_msa()
2875 …is of length %d but it must be equal to aln length (%" PRId64 ").", msa->gf_tag[f], (int) strlen(r… in minorize_msa()
2880 …he major alignment has a gap there! cmalign will choke on this.\n", msa->gf_tag[f], minor_msaA[m]-… in minorize_msa()
3078 esl_msa_AddGF(newmsa, msa->gf_tag[i], -1, msa->gf[i], -1); in add_gap_columns_to_msa()
/dports/biology/infernal/infernal-1.1.3/easel/
H A Desl_msa.h99 char **gf_tag; /* markup tags for unparsed #=GF lines */ member
H A Desl_msa.c334 ESL_ALLOC(new_msa->gf_tag, sizeof(char *) * msa->ngf); in esl_msa_Copy()
339 esl_strdup(msa->gf_tag[i], -1, &(new_msa->gf_tag[i])); in esl_msa_Copy()
479 n += esl_arr2_SSizeof(msa->gf_tag, msa->ngf); in esl_msa_Sizeof()
536 esl_arr2_Destroy((void **) msa->gf_tag, msa->ngf); in esl_msa_Destroy()
632 msa->gf_tag = NULL; in msa_create_mostly()
1596 ESL_REALLOC(msa->gf_tag, sizeof(char *) * n); in esl_msa_AddGF()
1601 if ((status = esl_memstrdup(tag, taglen, &(msa->gf_tag[msa->ngf]))) != eslOK) goto ERROR; in esl_msa_AddGF()
H A Desl_msafile2.c639 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); in esl_msafile2_ReadInfoPfam()
/dports/biology/hmmer/hmmer-3.3/easel/
H A Desl_msa.h99 char **gf_tag; /* markup tags for unparsed #=GF lines */ member
H A Desl_msa.c334 ESL_ALLOC(new_msa->gf_tag, sizeof(char *) * msa->ngf); in esl_msa_Copy()
339 esl_strdup(msa->gf_tag[i], -1, &(new_msa->gf_tag[i])); in esl_msa_Copy()
479 n += esl_arr2_SSizeof(msa->gf_tag, msa->ngf); in esl_msa_Sizeof()
536 esl_arr2_Destroy((void **) msa->gf_tag, msa->ngf); in esl_msa_Destroy()
632 msa->gf_tag = NULL; in msa_create_mostly()
1596 ESL_REALLOC(msa->gf_tag, sizeof(char *) * n); in esl_msa_AddGF()
1601 if ((status = esl_memstrdup(tag, taglen, &(msa->gf_tag[msa->ngf]))) != eslOK) goto ERROR; in esl_msa_AddGF()
H A Desl_msafile2.c639 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); in esl_msafile2_ReadInfoPfam()
/dports/lang/php73/php-7.3.33/ext/intl/locale/
H A Dlocale_methods.c122 static char* getPreferredTag(const char* gf_tag) in getPreferredTag() argument
127 grOffset = findOffset( LOC_GRANDFATHERED ,gf_tag); in getPreferredTag()
/dports/www/mod_php81/php-8.1.1/ext/intl/locale/
H A Dlocale_methods.c119 static char* getPreferredTag(const char* gf_tag) in getPreferredTag() argument
124 grOffset = findOffset( LOC_GRANDFATHERED ,gf_tag); in getPreferredTag()
/dports/lang/php81/php-8.1.1/ext/intl/locale/
H A Dlocale_methods.c119 static char* getPreferredTag(const char* gf_tag) in getPreferredTag() argument
124 grOffset = findOffset( LOC_GRANDFATHERED ,gf_tag); in getPreferredTag()
/dports/lang/php74/php-7.4.27/ext/intl/locale/
H A Dlocale_methods.c122 static char* getPreferredTag(const char* gf_tag) in getPreferredTag() argument
127 grOffset = findOffset( LOC_GRANDFATHERED ,gf_tag); in getPreferredTag()
/dports/lang/php80/php-8.0.15/ext/intl/locale/
H A Dlocale_methods.c119 static char* getPreferredTag(const char* gf_tag) in getPreferredTag() argument
124 grOffset = findOffset( LOC_GRANDFATHERED ,gf_tag); in getPreferredTag()
/dports/devel/php73-intl/php-7.3.33/ext/intl/locale/
H A Dlocale_methods.c122 static char* getPreferredTag(const char* gf_tag) in getPreferredTag() argument
127 grOffset = findOffset( LOC_GRANDFATHERED ,gf_tag); in getPreferredTag()
/dports/devel/php74-intl/php-7.4.27/ext/intl/locale/
H A Dlocale_methods.c122 static char* getPreferredTag(const char* gf_tag) in getPreferredTag() argument
127 grOffset = findOffset( LOC_GRANDFATHERED ,gf_tag); in getPreferredTag()
/dports/devel/php81-intl/php-8.1.1/ext/intl/locale/
H A Dlocale_methods.c119 static char* getPreferredTag(const char* gf_tag) in getPreferredTag() argument
124 grOffset = findOffset( LOC_GRANDFATHERED ,gf_tag); in getPreferredTag()
/dports/www/mod_php73/php-7.3.33/ext/intl/locale/
H A Dlocale_methods.c122 static char* getPreferredTag(const char* gf_tag) in getPreferredTag() argument
127 grOffset = findOffset( LOC_GRANDFATHERED ,gf_tag); in getPreferredTag()
/dports/devel/php80-intl/php-8.0.15/ext/intl/locale/
H A Dlocale_methods.c119 static char* getPreferredTag(const char* gf_tag) in getPreferredTag() argument
124 grOffset = findOffset( LOC_GRANDFATHERED ,gf_tag); in getPreferredTag()
/dports/www/mod_php74/php-7.4.27/ext/intl/locale/
H A Dlocale_methods.c122 static char* getPreferredTag(const char* gf_tag) in getPreferredTag() argument
127 grOffset = findOffset( LOC_GRANDFATHERED ,gf_tag); in getPreferredTag()
/dports/www/mod_php80/php-8.0.15/ext/intl/locale/
H A Dlocale_methods.c119 static char* getPreferredTag(const char* gf_tag) in getPreferredTag() argument
124 grOffset = findOffset( LOC_GRANDFATHERED ,gf_tag); in getPreferredTag()

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