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Searched refs:make_pair_table (Results 1 – 18 of 18) sorted by relevance

/dports/biology/viennarna/ViennaRNA-2.4.18/src/Utils/
H A Db2ct.c19 short *make_pair_table(const char *structure);
71 if ((table = make_pair_table(structure))==NULL) { in write_ct_file()
93 short *make_pair_table(const char *structure) in make_pair_table() function
H A Drefold.pl51 my @pt = make_pair_table($cons);
82 @pt = make_pair_table($cons);
93 sub make_pair_table { subroutine
H A Dswitch.pl69 my @fist = make_pair_table ($fist);
70 my @sest = make_pair_table ($sest);
179 sub make_pair_table { subroutine
/dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Perl/RNA/
H A DUtils.pm13 %EXPORT_TAGS = ( Structures => [qw(&make_pair_table &DB2PairList &DB2Shape &DB2Helix &MergeHelices)…
74 sub make_pair_table { subroutine
103 my $pt = make_pair_table($struct);
H A DDesign.pm479 my $pt = RNA::Utils::make_pair_table($struct);
/dports/biology/viennarna/ViennaRNA-2.4.18/src/RNAforester/src/utils/
H A Dutils.h33 short *make_pair_table(const char *structure);
/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/utils/
H A Dstructures.h1044 DEPRECATED(short *make_pair_table(const char *structure),
H A Dstructure_utils.c1864 make_pair_table(const char *structure) in make_pair_table() function
/dports/biology/viennarna/ViennaRNA-2.4.18/src/RNAforester/src/
H A Drnafuncs.cpp217 pair_table = make_pair_table(structure.c_str()); in drawRNAStructure()
470 pair_table = make_pair_table(structure.c_str()); in drawRNAAlignment()
471 alt_pair_table = make_pair_table(altStructure.c_str()); in drawRNAAlignment()
736 pair_table = make_pair_table(structure.c_str()); in generateRNAAlignmentXML()
737 alt_pair_table = make_pair_table(altStructure.c_str()); in generateRNAAlignmentXML()
H A Drna_profile_alignment.cpp935 pair_table = make_pair_table(structure.c_str()); in squigglePlot()
/dports/biology/viennarna/ViennaRNA-2.4.18/src/Kinwalker/
H A DEnergy.cpp276 pt = make_pair_table(structure.c_str());
/dports/biology/viennarna/ViennaRNA-2.4.18/src/RNAlocmin/
H A Dneighbourhood.cpp678 short *pt0 = make_pair_table(str0); in test()
679 short *pt1 = make_pair_table(str1); in test()
H A Dmove_set_inside.c743 short int *str = make_pair_table(struc); in move_standard()
946 short int *str = make_pair_table(struc); in browse_neighs()
H A Dmain.cpp897 str.structure = Opt.pknots? make_pair_table_PK(p):make_pair_table(p); in move()
/dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/
H A Dstructure_utils.i11 %ignore make_pair_table;
/dports/biology/viennarna/ViennaRNA-2.4.18/
H A DNEWS184 - new utility functions pack_structure() unpack_structure() make_pair_table()
/dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Perl/
H A DRNA.pod591 =item make_pair_table STRUCTURE
/dports/biology/viennarna/ViennaRNA-2.4.18/man/
H A DRNAlib.texi1325 @deftypefun short* make_pair_table (char* @var{structure})