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Name |
|
Date |
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#Lines |
LOC |
| .. | | 22-Apr-2021 | - |
| Makefile.am | H A D | 23-Nov-2020 | 1.1 KiB | 47 | 30 |
| Makefile.in | H A D | 22-Apr-2021 | 32.5 KiB | 980 | 868 |
| README | H A D | 23-Nov-2020 | 424 | 19 | 10 |
| RNAlocmin.1 | H A D | 23-Nov-2020 | 6.5 KiB | 205 | 203 |
| RNAlocmin.cpp | H A D | 23-Nov-2020 | 4.3 KiB | 156 | 124 |
| RNAlocmin.ggo | H A D | 23-Nov-2020 | 6 KiB | 63 | 55 |
| RNAlocmin.h | H A D | 23-Nov-2020 | 598 | 29 | 12 |
| RNAlocmin_cmdline.c | H A D | 22-Apr-2021 | 76.1 KiB | 2,013 | 1,424 |
| RNAlocmin_cmdline.h | H A D | 22-Apr-2021 | 22.3 KiB | 339 | 187 |
| aclocal.m4 | H A D | 22-Apr-2021 | 54.5 KiB | 1,516 | 1,366 |
| ax_cxx_compile_stdcxx.m4 | H A D | 23-Nov-2020 | 19.8 KiB | 983 | 759 |
| barrier_tree.cpp | H A D | 23-Nov-2020 | 4.4 KiB | 178 | 109 |
| barrier_tree.h | H A D | 23-Nov-2020 | 363 | 14 | 6 |
| compile | H A D | 22-Apr-2021 | 7.2 KiB | 349 | 259 |
| config.guess | H A D | 22-Apr-2021 | 48.3 KiB | 1,701 | 1,487 |
| config.h.in | H A D | 22-Apr-2021 | 5.5 KiB | 193 | 158 |
| config.sub | H A D | 22-Apr-2021 | 33.6 KiB | 1,861 | 1,683 |
| configure | H A D | 22-Apr-2021 | 264.2 KiB | 9,725 | 8,002 |
| configure.ac | H A D | 22-Apr-2021 | 948 | 50 | 36 |
| depcomp | H A D | 22-Apr-2021 | 23 KiB | 792 | 502 |
| findpath_pk.cpp | H A D | 23-Nov-2020 | 13.9 KiB | 540 | 381 |
| findpath_pk.h | H A D | 23-Nov-2020 | 2 KiB | 69 | 21 |
| flood.cpp | H A D | 23-Nov-2020 | 9.4 KiB | 302 | 201 |
| flood.h | H A D | 23-Nov-2020 | 763 | 22 | 11 |
| globals.cpp | H A D | 23-Nov-2020 | 3.4 KiB | 150 | 98 |
| globals.h | H A D | 23-Nov-2020 | 1.4 KiB | 76 | 38 |
| hash_util.cpp | H A D | 23-Nov-2020 | 3.4 KiB | 117 | 85 |
| hash_util.h | H A D | 23-Nov-2020 | 10.1 KiB | 314 | 242 |
| install-sh | H A D | 22-Apr-2021 | 15 KiB | 542 | 352 |
| main.cpp | H A D | 23-Nov-2020 | 29.9 KiB | 1,009 | 717 |
| missing | H A D | 22-Apr-2021 | 6.7 KiB | 216 | 143 |
| move_set_inside.c | H A D | 23-Nov-2020 | 26.4 KiB | 1,069 | 767 |
| move_set_inside.h | H A D | 23-Nov-2020 | 3.4 KiB | 98 | 53 |
| move_set_pk.cpp | H A D | 23-Nov-2020 | 19.9 KiB | 874 | 562 |
| move_set_pk.h | H A D | 23-Nov-2020 | 3 KiB | 85 | 49 |
| neighbourhood.cpp | H A D | 23-Nov-2020 | 17.5 KiB | 710 | 522 |
| neighbourhood.h | H A D | 23-Nov-2020 | 3.4 KiB | 127 | 77 |
| pknots.cpp | H A D | 23-Nov-2020 | 31.7 KiB | 1,266 | 913 |
| pknots.h | H A D | 23-Nov-2020 | 3.8 KiB | 153 | 100 |
| treeplot.cpp | H A D | 23-Nov-2020 | 8.4 KiB | 272 | 240 |
| treeplot.h | H A D | 23-Nov-2020 | 724 | 23 | 14 |
README
1RNAlocmin
2=========
3
4Finds local minima of RNA + constructs barrier tree
5
6
7Installation
8============
9
10First make sure that you have ViennaRNA package installed and that paths in Makefile:
11
12"ViennaRNA" points to header files ("H" directory in ViennaRNA)
13"ViennaLIB" points to "libRNA.a" library
14
15Then make sure you have "gengetopt" installed and your g++ compiler supports c++11 standard.
16Then simple "make" should do it.
17
18
19