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Searched refs:mat_ss (Results 1 – 19 of 19) sorted by relevance

/dports/math/dune-pdelab/dune-pdelab-20c7085389d3eb4f8ca99e1bc60f7fa6036536c8/dune/pdelab/localoperator/
H A Dnumericaljacobian.hh174 Jacobian& mat_ss, Jacobian& mat_sn, in jacobian_skeleton() argument
191 ResidualVector down_s(mat_ss.nrows()),up_s(mat_ss.nrows()); in jacobian_skeleton()
213 mat_ss.accumulate(lfsv_s,i,lfsu_s,j,(up_s(lfsv_s,i)-down_s(lfsv_s,i))/delta); in jacobian_skeleton()
267 Jacobian& mat_ss) const in jacobian_boundary()
280 ResidualVector down_s(mat_ss.nrows()),up_s(mat_ss.nrows()); in jacobian_boundary()
281 ResidualView downview_s = down_s.weightedAccumulationView(mat_ss.weight()); in jacobian_boundary()
282 ResidualView upview_s = up_s.weightedAccumulationView(mat_ss.weight());; in jacobian_boundary()
296 mat_ss.rawAccumulate(lfsv_s,i,lfsu_s,j,(up_s(lfsv_s,i)-down_s(lfsv_s,i))/delta); in jacobian_boundary()
H A Dnumericalresidual.hh90 Jacobian mat_ss(r_s.size(),x_s.size(),0); in alpha_skeleton() local
95 JacobianView view_ss = mat_ss.weightedAccumulationView(1.0); in alpha_skeleton()
105 mat_ss.usmv(r_s.weight(),x_s,r_s); in alpha_skeleton()
H A Dblockdiagonalwrapper.hh139 MAT& mat_ss, MAT& mat_sn, in jacobian_skeleton() argument
146 impl::BlockDiagonalAccumulationViewWrapper<MAT> view_ss(mat_ss, true); in jacobian_skeleton()
147 impl::BlockDiagonalAccumulationViewWrapper<MAT> view_other(mat_ss, false); in jacobian_skeleton()
154 MAT& mat_ss) const in jacobian_boundary()
156 _localOperator.jacobian_boundary(ig, lfsu_s, x_s, lfsv_s, mat_ss); in jacobian_boundary()
H A Dconvectiondiffusionccfv.hh196 M& mat_ss, M& mat_sn, in jacobian_skeleton() argument
256 mat_ss.accumulate(lfsu_s,0,lfsu_s,0, k_avg*face_volume/distance ); in jacobian_skeleton()
262 mat_ss.accumulate(lfsu_s,0,lfsu_s,0, vn*face_volume ); in jacobian_skeleton()
397 M& mat_ss) const in jacobian_boundary()
447 mat_ss.accumulate(lfsu_s,0,lfsv_s,0, k_inside*face_volume/distance ); in jacobian_boundary()
460 mat_ss.accumulate(lfsu_s,0,lfsv_s,0, (b*n)*face_volume ); in jacobian_boundary()
H A Dscaled.hh864 M& mat_ss, M& mat_sn, M& mat_ns, M& mat_nn) const in jacobian_skeleton() argument
868 my_mat_ss(mat_ss.weightedAccumulationView(factor)); in jacobian_skeleton()
909 M& mat_ss) const in jacobian_boundary()
913 my_mat_ss(mat_ss.weightedAccumulationView(factor)); in jacobian_boundary()
H A Dcombinedoperator.hh535 LocalMatrix& mat_ss, LocalMatrix& mat_sn, in jacobian_skeleton() argument
541 mat_ss, mat_sn, mat_ns, mat_nn); in jacobian_skeleton()
554 LocalMatrix& mat_ss) const in jacobian_boundary()
556 applyLops(LocalOperatorApply::jacobianBoundary, ig, lfsu_s, x_s, lfsv_s, mat_ss); in jacobian_boundary()
H A Dcallswitch.hh180 M & mat_ss, M & mat_sn, in jacobian_skeleton()
187 M & mat_ss) in jacobian_boundary()
348 M & mat_ss, M & mat_sn, in jacobian_skeleton()
352 mat_ss, mat_sn, mat_ns, mat_nn); in jacobian_skeleton()
357 M & mat_ss) in jacobian_boundary()
359 lop.jacobian_boundary(ig,lfsu_s,x_s,lfsv_s,mat_ss); in jacobian_boundary()
H A Dconvectiondiffusiondg.hh487 M& mat_ss, M& mat_sn, in jacobian_skeleton() argument
635 … mat_ss.accumulate(lfsu_s,i,lfsu_s,j,omegaup_s * phi_s[j] * normalflux *factor * phi_s[i]); in jacobian_skeleton()
636 mat_ss.accumulate(lfsu_s,i,lfsu_s,j,temp1 * phi_s[i]); in jacobian_skeleton()
637 … mat_ss.accumulate(lfsu_s,i,lfsu_s,j,phi_s[j] * factor * theta * omega_s * (An_F_s*tgradphi_s[i])); in jacobian_skeleton()
638 mat_ss.accumulate(lfsu_s,i,lfsu_s,j,phi_s[j] * ipfactor * phi_s[i]); in jacobian_skeleton()
904 M& mat_ss) const in jacobian_boundary()
1009 mat_ss.accumulate(lfsu_s,i,lfsu_s,j,phi_s[j] * normalflux * factor * phi_s[i]); in jacobian_boundary()
1027 … mat_ss.accumulate(lfsu_s,i,lfsu_s,j,omegaup_s * phi_s[j] * normalflux * factor * phi_s[i]); in jacobian_boundary()
1032 mat_ss.accumulate(lfsu_s,i,lfsu_s,j,-(An_F_s*tgradphi_s[j]) * factor * phi_s[i]); in jacobian_boundary()
1037 … mat_ss.accumulate(lfsu_s,i,lfsu_s,j,phi_s[j] * factor * theta * (An_F_s*tgradphi_s[i])); in jacobian_boundary()
[all …]
H A Dinterface.hh949 LocalMatrix& mat_ss, LocalMatrix& mat_sn, in jacobian_skeleton() argument
978 LocalMatrix& mat_ss) const in jacobian_boundary()
H A Ddgnavierstokes.hh562 LocalMatrix& mat_ss, LocalMatrix& mat_sn, in jacobian_skeleton() argument
665 mat_ss.accumulate(lfsv_s_v,j,lfsv_s_v,i, -val); in jacobian_skeleton()
666 mat_ss.accumulate(lfsv_s_v,i,lfsv_s_v,j, epsilon * val); in jacobian_skeleton()
667 … mat_ss.accumulate(lfsv_s_v,i,lfsv_s_v,j, phi_v_s[i] * phi_v_s[j] * penalty_factor * factor); in jacobian_skeleton()
674 mat_ss.accumulate(lfsv_s_v,j,lfsv_s_v_dd,i, - Tval); in jacobian_skeleton()
675 mat_ss.accumulate(lfsv_s_v_dd,i,lfsv_s_v,j, epsilon*Tval ); in jacobian_skeleton()
739 mat_ss.accumulate(lfsv_s_v,i,lfsv_s_p,j, val); in jacobian_skeleton()
740 mat_ss.accumulate(lfsv_s_p,j,lfsv_s_v,i, val * incomp_scaling); in jacobian_skeleton()
H A Ddgnavierstokesvelvecfem.hh596 LocalMatrix& mat_ss, LocalMatrix& mat_sn, in jacobian_skeleton() argument
704 … mat_ss.accumulate(lfsv_v_s,i,lfsu_v_s,j, -0.5 * (flux_jac_phi_j*phi_v_s[i]) * factor); in jacobian_skeleton()
705 … mat_ss.accumulate(lfsv_v_s,i,lfsu_v_s,j, epsilon * 0.5 * (flux_jac_phi_i*phi_v_s[j]) * factor); in jacobian_skeleton()
706 … mat_ss.accumulate(lfsv_v_s,i,lfsu_v_s,j, penalty_factor * (phi_v_s[j]*phi_v_s[i]) * factor); in jacobian_skeleton()
722 … mat_ss.accumulate(lfsv_v_s,i,lfsu_p_s,j, 0.5*phi_p_s[j] * (phi_v_s[i]*normal) * weight); in jacobian_skeleton()
779 …mat_ss.accumulate(lfsv_p_s,i,lfsu_v_s,j, 0.5*phi_p_s[i] * (phi_v_s[j]*normal) * incomp_scaling * w… in jacobian_skeleton()
H A Dblockoffdiagonalwrapper.hh157 MAT& mat_ss, MAT& mat_sn, in jacobian_skeleton() argument
/dports/math/dune-pdelab/dune-pdelab-20c7085389d3eb4f8ca99e1bc60f7fa6036536c8/dune/pdelab/test/
H A Dconvectiondiffusionfastdg.hh439 M& mat_ss, M& mat_sn, in jacobian_skeleton() argument
522 auto t_weight = mat_ss.weight(); in jacobian_skeleton()
523 assert(mat_ss.weight()==mat_sn.weight()); in jacobian_skeleton()
524 assert(mat_ss.weight()==mat_ns.weight()); in jacobian_skeleton()
525 assert(mat_ss.weight()==mat_nn.weight()); in jacobian_skeleton()
576 mat_ss.data()[lfsu_s.size()*i+j] += (temp1 * phi_s[i]); in jacobian_skeleton()
578 mat_ss.data()[lfsu_s.size()*i+j] += (phi_s[j] * ipfactor * phi_s[i]); in jacobian_skeleton()
799 M& mat_ss) const in jacobian_boundary()
856 auto t_weight = mat_ss.weight(); in jacobian_boundary()
895 mat_ss.data()[lfsu_s.size()*i+j] += (phi_s[j] * normalflux * factor * phi_s[i]); in jacobian_boundary()
[all …]
/dports/math/dune-pdelab/dune-pdelab-20c7085389d3eb4f8ca99e1bc60f7fa6036536c8/dune/pdelab/test/localoperator/
H A Dnonlinearconvectiondiffusiondg.hh232 M& mat_ss, M& mat_sn, in jacobian_skeleton() argument
235 …linearLocalOperator.jacobian_skeleton(ig, lfsu_s, x_s, lfsv_s, lfsu_n, x_n, lfsv_n, mat_ss, mat_sn… in jacobian_skeleton()
260 M& mat_ss) const in jacobian_boundary()
262 linearLocalOperator.jacobian_boundary(ig, lfsu_s, x_s, lfsv_s, mat_ss); in jacobian_boundary()
/dports/math/dune-pdelab/dune-pdelab-20c7085389d3eb4f8ca99e1bc60f7fa6036536c8/dune/pdelab/backend/istl/geneo/
H A Dlocaloperator_ovlp_region.hh171 M& mat_ss, M& mat_sn, in jacobian_skeleton() argument
176 …baseop.jacobian_skeleton (ig, lfsu_s, x_s, lfsv_s, lfsu_n, x_n, lfsv_n, mat_ss, mat_sn, mat_ns, ma… in jacobian_skeleton()
/dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/lib/tRNAscanSE/
H A DIntResultFile.pm200 …n()."\t".$tRNA->seq()."\t".$tRNA->mat_seq()."\t".$tRNA->ss()."\t".$tRNA->mat_ss()."\t".$tRNA->note…
285 $tRNA->mat_ss($columns[40]);
H A DCM.pm1051 $trna->mat_ss(substr($trna->ss(), 0, $istart - 1).substr($trna->ss(), $iend));
1052 $trna->ss($trna->mat_ss());
1698 $tRNA->mat_ss($tRNA->ss());
1909 $tRNA->mat_ss($tRNA->ss());
H A DScanResult.pm575 print {$$SECSTRUCT} "Seq: ".$tRNA->mat_seq()."\nStr: ".$tRNA->mat_ss()."\n";
H A DtRNA.pm844 sub mat_ss subroutine