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Searched refs:md_p (Results 1 – 25 of 131) sorted by relevance

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/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/
H A Dmodel.c311 vrna_md_defaults_reset(vrna_md_t *md_p) in vrna_md_defaults_reset() argument
340 if (md_p) { in vrna_md_defaults_reset()
348 vrna_md_defaults_dangles(md_p->dangles); in vrna_md_defaults_reset()
350 vrna_md_defaults_noLP(md_p->noLP); in vrna_md_defaults_reset()
351 vrna_md_defaults_noGU(md_p->noGU); in vrna_md_defaults_reset()
353 vrna_md_defaults_logML(md_p->logML); in vrna_md_defaults_reset()
354 vrna_md_defaults_gquad(md_p->gquad); in vrna_md_defaults_reset()
355 vrna_md_defaults_circ(md_p->circ); in vrna_md_defaults_reset()
356 vrna_md_defaults_uniq_ML(md_p->uniq_ML); in vrna_md_defaults_reset()
365 vrna_md_defaults_ribo(md_p->ribo); in vrna_md_defaults_reset()
[all …]
H A Dfold_compound.c87 vrna_md_t *md_p,
226 if (md_p) in vrna_fold_compound()
227 md = *md_p; in vrna_fold_compound()
331 if (md_p) in vrna_fold_compound_comparative2()
332 md = *md_p; in vrna_fold_compound_comparative2()
444 if (md_p) in vrna_fold_compound_TwoD()
445 md = *md_p; in vrna_fold_compound_TwoD()
594 vrna_md_t *md_p, in add_params() argument
609 fc->params = vrna_params(md_p); in add_params()
622 vrna_md_t *md_p; in set_fold_compound() local
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H A Dfold_compound.h433 const vrna_md_t *md_p,
476 vrna_md_t *md_p,
486 vrna_md_t *md_p,
494 vrna_md_t *md_p,
/dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/
H A Dsequence.i51 vrna_md_t *md_p = NULL)
58 if (!md_p) {
60 md_p = &md;
65 md_p);
80 vrna_md_t *md_p = NULL);
H A Daln_utils.i15 vrna_md_t *md_p = NULL)
22 char *c = vrna_aln_consensus_sequence((const char **)&v[0], md_p);
30 vrna_md_t *md_p = NULL)
37 char *c = vrna_aln_consensus_mis((const char **)&v[0], md_p);
53 my_consensus_sequence(std::vector<std::string> alignment, vrna_md_t *md_p = NULL);
56 my_aln_consensus_mis(std::vector<std::string> alignment, vrna_md_t *md_p = NULL);
H A Dplotting.i175 vrna_md_t *md_p = NULL)
177 return vrna_file_PS_rnaplot(sequence.c_str(), structure.c_str(), filename.c_str(), md_p);
186 vrna_md_t *md_p = NULL)
188 …_rnaplot_a(sequence.c_str(), structure.c_str(), filename.c_str(), pre.c_str(), post.c_str(), md_p);
207 vrna_md_t *md_p);
218 vrna_md_t *md_p);
/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/plotting/
H A Dplot_utils.c53 vrna_md_t *md_p) in vrna_annotate_covar_db() argument
57 md_p, in vrna_annotate_covar_db()
65 vrna_md_t *md_p, in vrna_annotate_covar_db_extended() argument
85 if (md_p) in vrna_annotate_covar_db_extended()
86 vrna_md_copy(&md, md_p); in vrna_annotate_covar_db_extended()
171 vrna_md_t *md_p) in vrna_annotate_covar_pairs() argument
182 if (md_p) in vrna_annotate_covar_pairs()
183 vrna_md_copy(&md, md_p); in vrna_annotate_covar_pairs()
H A Dstructures.h48 vrna_md_t *md_p);
75 vrna_md_t *md_p);
84 vrna_md_t *md_p,
H A Dutils.h35 vrna_md_t *md_p);
41 vrna_md_t *md_p,
H A Dstructures.c66 vrna_md_t *md_p,
79 vrna_md_t *md_p) in vrna_file_PS_rnaplot() argument
81 return vrna_file_PS_rnaplot_a(string, structure, ssfile, NULL, NULL, md_p); in vrna_file_PS_rnaplot()
91 vrna_md_t *md_p) in vrna_file_PS_rnaplot_a() argument
102 md_p, in vrna_file_PS_rnaplot_a()
117 vrna_md_t *md_p, in vrna_file_PS_rnaplot_layout() argument
146 md_p, in vrna_file_PS_rnaplot_layout()
165 vrna_md_t *md_p, in rnaplot_EPS() argument
177 if (!md_p) { in rnaplot_EPS()
179 md_p = &md; in rnaplot_EPS()
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/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/utils/
H A Dalignments.h247 const vrna_md_t *md_p,
260 const vrna_md_t *md_p);
275 const vrna_md_t *md_p);
H A Dmsa_utils.c446 if (md_p) in vrna_aln_conservation_struct()
447 vrna_md_copy(&md, md_p); in vrna_aln_conservation_struct()
482 const vrna_md_t *md_p, in vrna_aln_conservation_col() argument
505 if (md_p) in vrna_aln_conservation_col()
506 vrna_md_copy(&md, md_p); in vrna_aln_conservation_col()
549 const vrna_md_t *md_p) in vrna_aln_consensus_sequence() argument
575 if (md_p) in vrna_aln_consensus_sequence()
576 vrna_md_copy(&md, md_p); in vrna_aln_consensus_sequence()
611 const vrna_md_t *md_p) in vrna_aln_consensus_mis() argument
646 if (md_p) in vrna_aln_consensus_mis()
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/dports/net/mpich/mpich-3.4.3/modules/ucx/src/uct/tcp/
H A Dtcp_md.c41 const uct_md_config_t *md_config, uct_md_h *md_p) in uct_tcp_md_open() argument
56 *md_p = &md; in uct_tcp_md_open()
/dports/lang/gnat_util/gcc-6-20180516/gcc/
H A Dread-md.c820 handle_enum (file_location loc, bool md_p) in handle_enum() argument
834 if (def->md_p != md_p) in handle_enum()
842 def->md_p = md_p; in handle_enum()
865 if (md_p) in handle_enum()
/dports/lang/gcc48/gcc-4.8.5/gcc/
H A Dread-md.c798 handle_enum (int lineno, bool md_p) in handle_enum() argument
812 if (def->md_p != md_p) in handle_enum()
820 def->md_p = md_p; in handle_enum()
843 if (md_p) in handle_enum()
/dports/devel/arm-none-eabi-gcc492/gcc-4.9.2/gcc/
H A Dread-md.c798 handle_enum (int lineno, bool md_p) in handle_enum() argument
812 if (def->md_p != md_p) in handle_enum()
820 def->md_p = md_p; in handle_enum()
843 if (md_p) in handle_enum()
/dports/devel/mingw32-gcc/gcc-4.8.1/gcc/
H A Dread-md.c798 handle_enum (int lineno, bool md_p) in handle_enum() argument
812 if (def->md_p != md_p) in handle_enum()
820 def->md_p = md_p; in handle_enum()
843 if (md_p) in handle_enum()
/dports/lang/gcc6-aux/gcc-6-20180516/gcc/
H A Dread-md.c820 handle_enum (file_location loc, bool md_p) in handle_enum() argument
834 if (def->md_p != md_p) in handle_enum()
842 def->md_p = md_p; in handle_enum()
865 if (md_p) in handle_enum()
/dports/net/mpich/mpich-3.4.3/modules/ucx/src/uct/tcp/sockcm/
H A Dsockcm_md.c108 const uct_md_config_t *config, uct_md_h *md_p) in uct_sockcm_md_open() argument
121 *md_p = &md->super; in uct_sockcm_md_open()
/dports/audio/infamous-plugins-lv2/infamousPlugins-0.3.0-7-g778e591/src/octolo/
H A Doctolo.c120 float *md_p; member
327 gain[MID] = *plug->md_p**plug->enable_p; in run_octolo()
393 gain[MID] = *plug->md_p**plug->enable_p; in run_octolo()
652 gainl[MID] *= *plug->md_p**plug->enable_p; in run_stereoctolo()
653 gainr[MID] *= *plug->md_p**plug->enable_p; in run_stereoctolo()
731 gainl[MID] *= *plug->md_p**plug->enable_p; in run_stereoctolo()
732 gainr[MID] *= *plug->md_p**plug->enable_p; in run_stereoctolo()
871 plug->md_p = (float*)data; in connect_octolo_ports()
920 plug->md_p = (float*)data; in connect_stereoctolo_ports()
/dports/net/mpich/mpich-3.4.3/modules/ucx/src/uct/rocm/gdr/
H A Drocm_gdr_md.c124 const uct_md_config_t *md_config, uct_md_h *md_p) in uct_rocm_gdr_md_open() argument
137 *md_p = (uct_md_h) md; in uct_rocm_gdr_md_open()
/dports/net/mpich/mpich-3.4.3/modules/ucx/src/uct/sm/mm/base/
H A Dmm_md.c97 const uct_md_config_t *config, uct_md_h *md_p) in uct_mm_md_open() argument
129 *md_p = &md->super; in uct_mm_md_open()
/dports/net/mpich/mpich-3.4.3/modules/ucx/src/uct/rocm/copy/
H A Drocm_copy_md.c121 const uct_md_config_t *md_config, uct_md_h *md_p) in uct_rocm_copy_md_open() argument
134 *md_p = (uct_md_h) md; in uct_rocm_copy_md_open()
/dports/audio/ezstream/ezstream-0.5.6/src/
H A Dmetadata.c450 metadata_free(metadata_t **md_p) in metadata_free() argument
454 if (md_p == NULL || (md = *md_p) == NULL) in metadata_free()
462 xfree(*md_p); in metadata_free()
463 *md_p = NULL; in metadata_free()
/dports/devel/aarch64-none-elf-gcc/gcc-8.4.0/gcc/
H A Dread-md.c911 md_reader::handle_enum (file_location loc, bool md_p) in handle_enum() argument
925 if (def->md_p != md_p) in handle_enum()
933 def->md_p = md_p; in handle_enum()
954 if (md_p) in handle_enum()

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