/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/ |
H A D | model.c | 311 vrna_md_defaults_reset(vrna_md_t *md_p) in vrna_md_defaults_reset() argument 340 if (md_p) { in vrna_md_defaults_reset() 348 vrna_md_defaults_dangles(md_p->dangles); in vrna_md_defaults_reset() 350 vrna_md_defaults_noLP(md_p->noLP); in vrna_md_defaults_reset() 351 vrna_md_defaults_noGU(md_p->noGU); in vrna_md_defaults_reset() 353 vrna_md_defaults_logML(md_p->logML); in vrna_md_defaults_reset() 354 vrna_md_defaults_gquad(md_p->gquad); in vrna_md_defaults_reset() 355 vrna_md_defaults_circ(md_p->circ); in vrna_md_defaults_reset() 356 vrna_md_defaults_uniq_ML(md_p->uniq_ML); in vrna_md_defaults_reset() 365 vrna_md_defaults_ribo(md_p->ribo); in vrna_md_defaults_reset() [all …]
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H A D | fold_compound.c | 87 vrna_md_t *md_p, 226 if (md_p) in vrna_fold_compound() 227 md = *md_p; in vrna_fold_compound() 331 if (md_p) in vrna_fold_compound_comparative2() 332 md = *md_p; in vrna_fold_compound_comparative2() 444 if (md_p) in vrna_fold_compound_TwoD() 445 md = *md_p; in vrna_fold_compound_TwoD() 594 vrna_md_t *md_p, in add_params() argument 609 fc->params = vrna_params(md_p); in add_params() 622 vrna_md_t *md_p; in set_fold_compound() local [all …]
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H A D | fold_compound.h | 433 const vrna_md_t *md_p, 476 vrna_md_t *md_p, 486 vrna_md_t *md_p, 494 vrna_md_t *md_p,
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/dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/ |
H A D | sequence.i | 51 vrna_md_t *md_p = NULL) 58 if (!md_p) { 60 md_p = &md; 65 md_p); 80 vrna_md_t *md_p = NULL);
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H A D | aln_utils.i | 15 vrna_md_t *md_p = NULL) 22 char *c = vrna_aln_consensus_sequence((const char **)&v[0], md_p); 30 vrna_md_t *md_p = NULL) 37 char *c = vrna_aln_consensus_mis((const char **)&v[0], md_p); 53 my_consensus_sequence(std::vector<std::string> alignment, vrna_md_t *md_p = NULL); 56 my_aln_consensus_mis(std::vector<std::string> alignment, vrna_md_t *md_p = NULL);
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H A D | plotting.i | 175 vrna_md_t *md_p = NULL) 177 return vrna_file_PS_rnaplot(sequence.c_str(), structure.c_str(), filename.c_str(), md_p); 186 vrna_md_t *md_p = NULL) 188 …_rnaplot_a(sequence.c_str(), structure.c_str(), filename.c_str(), pre.c_str(), post.c_str(), md_p); 207 vrna_md_t *md_p); 218 vrna_md_t *md_p);
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/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/plotting/ |
H A D | plot_utils.c | 53 vrna_md_t *md_p) in vrna_annotate_covar_db() argument 57 md_p, in vrna_annotate_covar_db() 65 vrna_md_t *md_p, in vrna_annotate_covar_db_extended() argument 85 if (md_p) in vrna_annotate_covar_db_extended() 86 vrna_md_copy(&md, md_p); in vrna_annotate_covar_db_extended() 171 vrna_md_t *md_p) in vrna_annotate_covar_pairs() argument 182 if (md_p) in vrna_annotate_covar_pairs() 183 vrna_md_copy(&md, md_p); in vrna_annotate_covar_pairs()
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H A D | structures.h | 48 vrna_md_t *md_p); 75 vrna_md_t *md_p); 84 vrna_md_t *md_p,
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H A D | utils.h | 35 vrna_md_t *md_p); 41 vrna_md_t *md_p,
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H A D | structures.c | 66 vrna_md_t *md_p, 79 vrna_md_t *md_p) in vrna_file_PS_rnaplot() argument 81 return vrna_file_PS_rnaplot_a(string, structure, ssfile, NULL, NULL, md_p); in vrna_file_PS_rnaplot() 91 vrna_md_t *md_p) in vrna_file_PS_rnaplot_a() argument 102 md_p, in vrna_file_PS_rnaplot_a() 117 vrna_md_t *md_p, in vrna_file_PS_rnaplot_layout() argument 146 md_p, in vrna_file_PS_rnaplot_layout() 165 vrna_md_t *md_p, in rnaplot_EPS() argument 177 if (!md_p) { in rnaplot_EPS() 179 md_p = &md; in rnaplot_EPS() [all …]
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/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/utils/ |
H A D | alignments.h | 247 const vrna_md_t *md_p, 260 const vrna_md_t *md_p); 275 const vrna_md_t *md_p);
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H A D | msa_utils.c | 446 if (md_p) in vrna_aln_conservation_struct() 447 vrna_md_copy(&md, md_p); in vrna_aln_conservation_struct() 482 const vrna_md_t *md_p, in vrna_aln_conservation_col() argument 505 if (md_p) in vrna_aln_conservation_col() 506 vrna_md_copy(&md, md_p); in vrna_aln_conservation_col() 549 const vrna_md_t *md_p) in vrna_aln_consensus_sequence() argument 575 if (md_p) in vrna_aln_consensus_sequence() 576 vrna_md_copy(&md, md_p); in vrna_aln_consensus_sequence() 611 const vrna_md_t *md_p) in vrna_aln_consensus_mis() argument 646 if (md_p) in vrna_aln_consensus_mis() [all …]
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/dports/net/mpich/mpich-3.4.3/modules/ucx/src/uct/tcp/ |
H A D | tcp_md.c | 41 const uct_md_config_t *md_config, uct_md_h *md_p) in uct_tcp_md_open() argument 56 *md_p = &md; in uct_tcp_md_open()
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/dports/lang/gnat_util/gcc-6-20180516/gcc/ |
H A D | read-md.c | 820 handle_enum (file_location loc, bool md_p) in handle_enum() argument 834 if (def->md_p != md_p) in handle_enum() 842 def->md_p = md_p; in handle_enum() 865 if (md_p) in handle_enum()
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/dports/lang/gcc48/gcc-4.8.5/gcc/ |
H A D | read-md.c | 798 handle_enum (int lineno, bool md_p) in handle_enum() argument 812 if (def->md_p != md_p) in handle_enum() 820 def->md_p = md_p; in handle_enum() 843 if (md_p) in handle_enum()
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/dports/devel/arm-none-eabi-gcc492/gcc-4.9.2/gcc/ |
H A D | read-md.c | 798 handle_enum (int lineno, bool md_p) in handle_enum() argument 812 if (def->md_p != md_p) in handle_enum() 820 def->md_p = md_p; in handle_enum() 843 if (md_p) in handle_enum()
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/dports/devel/mingw32-gcc/gcc-4.8.1/gcc/ |
H A D | read-md.c | 798 handle_enum (int lineno, bool md_p) in handle_enum() argument 812 if (def->md_p != md_p) in handle_enum() 820 def->md_p = md_p; in handle_enum() 843 if (md_p) in handle_enum()
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/dports/lang/gcc6-aux/gcc-6-20180516/gcc/ |
H A D | read-md.c | 820 handle_enum (file_location loc, bool md_p) in handle_enum() argument 834 if (def->md_p != md_p) in handle_enum() 842 def->md_p = md_p; in handle_enum() 865 if (md_p) in handle_enum()
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/dports/net/mpich/mpich-3.4.3/modules/ucx/src/uct/tcp/sockcm/ |
H A D | sockcm_md.c | 108 const uct_md_config_t *config, uct_md_h *md_p) in uct_sockcm_md_open() argument 121 *md_p = &md->super; in uct_sockcm_md_open()
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/dports/audio/infamous-plugins-lv2/infamousPlugins-0.3.0-7-g778e591/src/octolo/ |
H A D | octolo.c | 120 float *md_p; member 327 gain[MID] = *plug->md_p**plug->enable_p; in run_octolo() 393 gain[MID] = *plug->md_p**plug->enable_p; in run_octolo() 652 gainl[MID] *= *plug->md_p**plug->enable_p; in run_stereoctolo() 653 gainr[MID] *= *plug->md_p**plug->enable_p; in run_stereoctolo() 731 gainl[MID] *= *plug->md_p**plug->enable_p; in run_stereoctolo() 732 gainr[MID] *= *plug->md_p**plug->enable_p; in run_stereoctolo() 871 plug->md_p = (float*)data; in connect_octolo_ports() 920 plug->md_p = (float*)data; in connect_stereoctolo_ports()
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/dports/net/mpich/mpich-3.4.3/modules/ucx/src/uct/rocm/gdr/ |
H A D | rocm_gdr_md.c | 124 const uct_md_config_t *md_config, uct_md_h *md_p) in uct_rocm_gdr_md_open() argument 137 *md_p = (uct_md_h) md; in uct_rocm_gdr_md_open()
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/dports/net/mpich/mpich-3.4.3/modules/ucx/src/uct/sm/mm/base/ |
H A D | mm_md.c | 97 const uct_md_config_t *config, uct_md_h *md_p) in uct_mm_md_open() argument 129 *md_p = &md->super; in uct_mm_md_open()
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/dports/net/mpich/mpich-3.4.3/modules/ucx/src/uct/rocm/copy/ |
H A D | rocm_copy_md.c | 121 const uct_md_config_t *md_config, uct_md_h *md_p) in uct_rocm_copy_md_open() argument 134 *md_p = (uct_md_h) md; in uct_rocm_copy_md_open()
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/dports/audio/ezstream/ezstream-0.5.6/src/ |
H A D | metadata.c | 450 metadata_free(metadata_t **md_p) in metadata_free() argument 454 if (md_p == NULL || (md = *md_p) == NULL) in metadata_free() 462 xfree(*md_p); in metadata_free() 463 *md_p = NULL; in metadata_free()
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/dports/devel/aarch64-none-elf-gcc/gcc-8.4.0/gcc/ |
H A D | read-md.c | 911 md_reader::handle_enum (file_location loc, bool md_p) in handle_enum() argument 925 if (def->md_p != md_p) in handle_enum() 933 def->md_p = md_p; in handle_enum() 954 if (md_p) in handle_enum()
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