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Searched refs:min_frac (Results 1 – 25 of 45) sorted by relevance

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/dports/net/ipsumdump/ipsumdump-1.86/libclick-2.1/libsrc/
H A Drouterthread.cc210 RouterThread::set_cpu_share(unsigned min_frac, unsigned max_frac) in set_cpu_share() argument
212 if (min_frac == 0) in set_cpu_share()
213 min_frac = 1; in set_cpu_share()
214 if (min_frac > Task::MAX_UTILIZATION - 1) in set_cpu_share()
215 min_frac = Task::MAX_UTILIZATION - 1; in set_cpu_share()
218 if (max_frac < min_frac) in set_cpu_share()
219 max_frac = min_frac; in set_cpu_share()
220 _min_click_share = min_frac; in set_cpu_share()
/dports/misc/vxl/vxl-3.3.2/contrib/rpl/rrel/
H A Drrel_muset_obj.h100 void set_min_inlier_fraction( double min_frac=0.25 )
101 { min_frac_ = min_frac; }
/dports/science/afni/afni-AFNI_21.3.16/src/python_scripts/scripts/
H A Dtiming_tool.py1502 self.min_frac = 0.3 # applies to timing_to_1D
1953 self.min_frac = val
1954 if self.min_frac < 0.0 or self.min_frac > 1.0:
1955 print('** invalid -min_frac = %g' % self.min_frac)
2744 if self.min_frac <= 0.0 or self.min_frac > 1.0:
2753 self.min_frac, self.per_run)
2893 if self.min_frac <= 0.0 or self.min_frac > 1.0:
2898 self.min_frac, self.per_run,
2983 if self.min_frac >= 0 and self.min_frac < 1: frac = self.min_frac
/dports/math/adept/adept-2.0.8/adept/
H A Dminimize_levenberg_marquardt.cpp350 Vector min_frac = -(x(ifree(new_min_bounds)) - min_x(ifree(new_min_bounds))) in minimize_levenberg_marquardt_bounded() local
352 mmin_frac = minval(min_frac); in minimize_levenberg_marquardt_bounded()
353 imin = new_min_bounds(minloc(min_frac)); in minimize_levenberg_marquardt_bounded()
/dports/biology/bfc/bfc-69ab176e/
H A Dbfc.h21 float min_frac; member
H A Dbfc.c28 opt->min_frac = .9; in bfc_opt_init()
/dports/biology/stringtie/stringtie-2.1.1/samtools-0.1.18/
H A Dbam_plcmd.c85 double min_frac; // for indels member
274 bca->min_frac = conf->min_frac; in mpileup()
446 mplp.min_frac = 0.002; mplp.min_support = 1; in bam_mpileup()
479 case 'F': mplp.min_frac = atof(optarg); break; in bam_mpileup()
524 …derr, " -F FLOAT minimum fraction of gapped reads for candidates [%g]\n", mplp.min_frac); in bam_mpileup()
/dports/biology/ugene/ugene-40.1/src/libs_3rdparty/samtools/src/samtools/
H A Dbam2bcf.h15 double min_frac; // for collecting indel candidates member
H A Dbam_plcmd.c86 double min_frac; // for indels member
300 bca->min_frac = conf->min_frac; in mpileup()
476 mplp.min_frac = 0.002; mplp.min_support = 1; in bam_mpileup()
579 …derr, " -F FLOAT minimum fraction of gapped reads for candidates [%g]\n", mplp.min_frac); in bam_mpileup()
/dports/math/gismo/gismo-21.12.0/src/gsCore/
H A DgsMath.h402 T min_frac = frexp(a, &min_exp);
406 std::swap(min_frac, max_frac);
412 const T scaled_min_frac = math::ldexp(min_frac, min_exp-max_exp);
/dports/science/afni/afni-AFNI_21.3.16/doc/misc_scripts/AFNI_data6/FT_analysis/PPI/
H A Dcmd.ppi.2.make.regs110 -min_frac 0.3 \
/dports/biology/py-pysam/pysam-0.18.0/samtools/
H A Dbam2bcf.h65 double min_frac; // for collecting indel candidates member
H A Dbam_plcmd.c205 double min_frac; // for indels member
704 bca->min_frac = conf->min_frac; in mpileup()
1263 mplp.min_frac = 0.002; mplp.min_support = 1; in bam_mpileup()
1427 case 'F': mplp.min_frac = atof(optarg); deprecated(c); break; in bam_mpileup()
H A Dbam_plcmd.c.pysam.c207 double min_frac; // for indels member
706 bca->min_frac = conf->min_frac; in mpileup()
1265 mplp.min_frac = 0.002; mplp.min_support = 1; in bam_mpileup()
1429 case 'F': mplp.min_frac = atof(optarg); deprecated(c); break; in bam_mpileup()
H A Dbam2bcf_indel.c206 if ( !indel_support_ok && na >= bca->min_support && frac >= bca->min_frac ) in bcf_call_gap_prep()
223 … indel_support_ok = ( (double)n_alt / n_tot < bca->min_frac || n_alt < bca->min_support ) ? 0 : 1; in bcf_call_gap_prep()
/dports/biology/samtools/samtools-1.14/
H A Dbam2bcf.h65 double min_frac; // for collecting indel candidates member
H A Dbam_plcmd.c205 double min_frac; // for indels member
704 bca->min_frac = conf->min_frac; in mpileup()
1263 mplp.min_frac = 0.002; mplp.min_support = 1; in bam_mpileup()
1427 case 'F': mplp.min_frac = atof(optarg); deprecated(c); break; in bam_mpileup()
/dports/biology/bcftools/bcftools-1.14/
H A Dbam2bcf.h85 double min_frac; // for collecting indel candidates member
H A Dmpileup.c74 double min_frac; // for indels member
844 conf->bca->min_frac = conf->min_frac; in mpileup()
1152 " -F, --gap-frac FLOAT Minimum fraction of gapped reads [%g]\n", mplp->min_frac); in print_usage()
1205 mplp.min_frac = 0.05; mplp.indel_bias = 1.0; mplp.min_support = 2; in main_mpileup()
1399 case 'F': mplp.min_frac = atof(optarg); break; in main_mpileup()
1414 mplp.min_frac = 0.1; in main_mpileup()
1431 mplp.min_frac = 0.002; in main_mpileup()
/dports/biology/bio-mocha/bcftools-1.14/
H A Dbam2bcf.h85 double min_frac; // for collecting indel candidates member
H A Dmpileup.c74 double min_frac; // for indels member
844 conf->bca->min_frac = conf->min_frac; in mpileup()
1152 " -F, --gap-frac FLOAT Minimum fraction of gapped reads [%g]\n", mplp->min_frac); in print_usage()
1205 mplp.min_frac = 0.05; mplp.indel_bias = 1.0; mplp.min_support = 2; in main_mpileup()
1399 case 'F': mplp.min_frac = atof(optarg); break; in main_mpileup()
1414 mplp.min_frac = 0.1; in main_mpileup()
1431 mplp.min_frac = 0.002; in main_mpileup()
/dports/biology/py-pysam/pysam-0.18.0/bcftools/
H A Dbam2bcf.h85 double min_frac; // for collecting indel candidates member
H A Dmpileup.c74 double min_frac; // for indels member
844 conf->bca->min_frac = conf->min_frac; in mpileup()
1152 " -F, --gap-frac FLOAT Minimum fraction of gapped reads [%g]\n", mplp->min_frac); in print_usage()
1205 mplp.min_frac = 0.05; mplp.indel_bias = 1.0; mplp.min_support = 2; in main_mpileup()
1399 case 'F': mplp.min_frac = atof(optarg); break; in main_mpileup()
1414 mplp.min_frac = 0.1; in main_mpileup()
1431 mplp.min_frac = 0.002; in main_mpileup()
H A Dmpileup.c.pysam.c76 double min_frac; // for indels member
846 conf->bca->min_frac = conf->min_frac; in mpileup()
1154 " -F, --gap-frac FLOAT Minimum fraction of gapped reads [%g]\n", mplp->min_frac); in print_usage()
1207 mplp.min_frac = 0.05; mplp.indel_bias = 1.0; mplp.min_support = 2; in main_mpileup()
1401 case 'F': mplp.min_frac = atof(optarg); break; in main_mpileup()
1416 mplp.min_frac = 0.1; in main_mpileup()
1433 mplp.min_frac = 0.002; in main_mpileup()
/dports/science/afni/afni-AFNI_21.3.16/src/python_scripts/afnipy/
H A Dlib_timing.py501 def timing_to_1D(self, run_len, tr, min_frac, per_run=0, allow_warns=0, argument
534 thr_res = self.get_threshold_list(row, min_frac)
542 new_res = self.get_threshold_list(result, min_frac)

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