| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/ |
| H A D | grammar.i | 17 double motif_en,
22 vrna_ud_add_motif($self, motif.c_str(), motif_en, NULL, options);
24 vrna_ud_add_motif($self, motif.c_str(), motif_en, name.c_str(), options);
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| H A D | grammar.dox | 3 @fn void vrna_ud_add_motif(vrna_fold_compound_t *vc, const char *motif, double motif_en, unsigned …
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| /dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/ |
| H A D | unstructured_domains.h | 241 …double *motif_en; /**< @brief Ligand binding free energy contribu… member
370 double motif_en,
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| H A D | unstructured_domains.c | 187 double motif_en,
650 double motif_en, in vrna_ud_add_motif() argument
663 add_ligand_motif(vc, motif, motif_en, motif_name, loop_type); in vrna_ud_add_motif()
996 free(vc->domains_up->motif_en); in remove_ligands_up()
1018 vc->domains_up->motif_en = NULL; in init_ligands_up()
1240 if (ee == (int)roundf(domains_up->motif_en[k] * 100.)) in backtrack_MFE_matrix()
1587 double motif_en, in add_ligand_motif() argument
1629 ud->motif_en = (double *)vrna_realloc(ud->motif_en, in add_ligand_motif()
1632 ud->motif_en[ud->motif_count] = motif_en; in add_ligand_motif()
2088 data->dG[i] = (int)roundf(domains_up->motif_en[i] * 100.); in prepare_default_data()
[all …]
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| H A D | commands.c | 153 float motif_en; member
358 vrna_ud_add_motif(vc, d->motif, d->motif_en, d->motif_name, d->loop_type); in apply_ud()
543 data->motif_en = e; in parse_ud_command()
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| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Perl/ |
| H A D | RNA_wrap.cpp | 7888 …d_add_motif__SWIG_0(vrna_fold_compound_t *self,std::string motif,double motif_en,std::string name=… in vrna_fold_compound_t_ud_add_motif__SWIG_0() argument
7890 vrna_ud_add_motif(self, motif.c_str(), motif_en, NULL, options); in vrna_fold_compound_t_ud_add_motif__SWIG_0()
7892 vrna_ud_add_motif(self, motif.c_str(), motif_en, name.c_str(), options); in vrna_fold_compound_t_ud_add_motif__SWIG_0()
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| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Python/ |
| H A D | RNA_wrap.cpp | 12365 …ound_t_ud_add_motif(vrna_fold_compound_t *self,std::string motif,double motif_en,std::string name=… in vrna_fold_compound_t_ud_add_motif() argument
12367 vrna_ud_add_motif(self, motif.c_str(), motif_en, NULL, options); in vrna_fold_compound_t_ud_add_motif()
12369 vrna_ud_add_motif(self, motif.c_str(), motif_en, name.c_str(), options); in vrna_fold_compound_t_ud_add_motif()
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| /dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Python3/ |
| H A D | RNA_wrap.cpp | 12502 …ound_t_ud_add_motif(vrna_fold_compound_t *self,std::string motif,double motif_en,std::string name=… in vrna_fold_compound_t_ud_add_motif() argument
12504 vrna_ud_add_motif(self, motif.c_str(), motif_en, NULL, options); in vrna_fold_compound_t_ud_add_motif()
12506 vrna_ud_add_motif(self, motif.c_str(), motif_en, name.c_str(), options); in vrna_fold_compound_t_ud_add_motif()
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