Searched refs:nTaxa (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/cd_utils/ |
| H A D | cuPrefTaxNodes.cpp | 183 unsigned int nAdded = 0, nTaxa = taxids.size(); in TaxIdsToCddOrgRefSet() local
188 for (unsigned int i = 0; i < nTaxa; ++i) { in TaxIdsToCddOrgRefSet()
|
| /dports/biology/mrbayes/MrBayes-3.2.7/src/ |
| H A D | utils.c | 2189 for (i=0; i<nTaxa; i++) in AreTopologiesSame()
2252 for (i=0; i<nTaxa; i++) in AreTreesSame()
4935 int i, nTaxa; in LabelTree() local
4938 nTaxa = t->nNodes - t->nIntNodes; in LabelTree()
4940 nTaxa--; in LabelTree()
5512 int i, j, nTaxa; in PrintTranslateBlock() local
5521 for (i=0; i<nTaxa; i++) in PrintTranslateBlock()
5526 if (i == nTaxa-1) in PrintTranslateBlock()
6106 stopNode = 2*nTaxa - 2; in RandResolve()
6108 stopNode = 2*nTaxa - 1; in RandResolve()
[all …]
|
| H A D | mcmc.c | 564 int i, j, nTaxa; in AddTreeToPartitionCounters() local
568 nTaxa = tree->nNodes - tree->nIntNodes - 1; in AddTreeToPartitionCounters()
570 nTaxa = tree->nNodes - tree->nIntNodes; in AddTreeToPartitionCounters()
572 for (i=0; i<nTaxa; i++) in AddTreeToPartitionCounters()
2133 int i, j, n, nTaxa, nLongsNeeded; in CopyTrees() local
2148 nTaxa = from->nNodes - from->nIntNodes; in CopyTrees()
2150 nTaxa = from->nNodes - from->nIntNodes - 1; in CopyTrees()
15228 int i, j, nTaxa; in RemoveTreeFromPartitionCounters() local
15232 nTaxa = tree->nNodes - tree->nIntNodes - 1; in RemoveTreeFromPartitionCounters()
15234 nTaxa = tree->nNodes - tree->nIntNodes; in RemoveTreeFromPartitionCounters()
[all …]
|
| H A D | model.c | 12083 int i, k, chn, nTaxa, tmp; in FillTreeParams() local
12103 nTaxa = tree->nNodes - tree->nIntNodes - 1; in FillTreeParams()
12105 nTaxa = tree->nNodes - tree->nIntNodes; in FillTreeParams()
12151 constraintTreeRef = AllocatePolyTree (nTaxa); in FillTreeParams()
12162 constraintTree = AllocatePolyTree (nTaxa); in FillTreeParams()
12911 int i, st, isCalibrated, isClock, nTaxa, in InitializeChainTrees() local
12919 nTaxa = numSpecies; in InitializeChainTrees()
12921 nTaxa = numLocalTaxa; in InitializeChainTrees()
12959 if ((*treeHandle = AllocateTree (nTaxa)) == NULL) in InitializeChainTrees()
12971 if ((*treeHandle = AllocateTree (nTaxa)) == NULL) in InitializeChainTrees()
|
| /dports/biology/iqtree/IQ-TREE-2.0.6/pll/ |
| H A D | utils.c | 1106 swapSite (unsigned char ** buf, int s1, int s2, int nTaxa) in swapSite() argument
1111 for (i = 1; i <= nTaxa; ++ i) in swapSite()
1326 copySite (unsigned char ** dst, unsigned char ** src, int to, int from, int nTaxa) in copySite() argument
1330 for (i = 1; i <= nTaxa; ++ i) in copySite()
|