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Searched refs:n_nb (Results 1 – 25 of 37) sorted by relevance

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/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dvarcov.cpp188 n_nb = 0; in CalcNB()
205 n_nb++; in CalcNB()
213 snpInfo_sort[t].n_nb = n_nb; in CalcNB()
279 int n_nb = 0; in AnalyzeBimbam() local
290 n_nb = snpInfo[t].n_nb + 1; in AnalyzeBimbam()
292 n_nb = snpInfo[t].n_nb - n_nb + 1; in AnalyzeBimbam()
318 n_nb = snpInfo[t].n_nb; in AnalyzeBimbam()
379 int n_nb = 0; in AnalyzePlink() local
390 n_nb = snpInfo[t].n_nb + 1; in AnalyzePlink()
392 n_nb = snpInfo[t].n_nb - n_nb + 1; in AnalyzePlink()
[all …]
H A Dvc.cpp1024 size_t n_nb, nsamp1, nsamp2, n12, bin_size = 10, bin; in ReadFile_cor() local
1139 n_nb = 0; in ReadFile_cor()
1145 rs2 = vec_rs[ns_total + n_nb + 1]; in ReadFile_cor()
1146 d_pos2 = vec_bp[ns_total + n_nb + 1]; in ReadFile_cor()
1147 d_cm2 = vec_cm[ns_total + n_nb + 1]; in ReadFile_cor()
1156 1.0 / (double)min(vec_n[ns_total], vec_n[ns_total + n_nb + 1]); in ReadFile_cor()
1159 n12 = min(vec_n[ns_total], vec_n[ns_total + n_nb + 1]); in ReadFile_cor()
1170 bin = min((int)floor(((double)n_nb + 1) / window_ns * bin_size), in ReadFile_cor()
1208 n_nb++; in ReadFile_cor()
H A Dparam.h49 size_t n_nb; // Number of neighbours on the right hand side. variable
/dports/science/nwchem-data/nwchem-7.0.2-release/src/NWints/ecp/
H A Decp_local1.F121 n_nb = (l_b+1)*(l_b+2)/2
124 & n_na,n_all_a,l_sa,n_nsa,n_ta,n_nb
274 i_ang_a = i_ang+max(n_ang_a*n_nb,n_ang_t)
276 i_free = i_ang_a+max(n_ang_t,n_na*n_nb)
316 n_ang_t = n_ang_a*n_nb
347 call dgemm ('N','T',n_nb,n_na,n_l,fac,
349 & tmp(i_z),n_nb)
356 call dgemm ('N','T',n_na,n_nb,n_l,fac,
360 & 1,n_nb,1,n_na,1,n_nb,'Completed angular ints',
365 i_ang_a = i_ang_a+n_l*n_nb
[all …]
H A Decp_int1.F141 n_nb = (l_b+1)*(l_b+2)/2
144 & n_na,n_all_a,l_sa,n_nsa,n_ta,n_nb
330 i_ang_a = i_ang+max(n_ang_a*n_nb*n_x,n_ang_t)
332 i_free = i_ang_a+max(n_ang_t*n_x,n_na*n_nb)
386 n_ang_t = n_ang_a*n_nb
390 call ecp_matpr (tmp(i),1,n_nb,1,n_ang_a,
426 call dgemm ('N','T',n_nb,n_na,n_l,fac,
428 & tmp(i_z),n_nb)
439 & 1,n_nb,1,n_na,1,n_nb,'Completed angular ints',
444 i_ang_a = i_ang_a+n_l*n_nb
[all …]
H A Decp_local2.F121 n_nb = (l_b+1)*(l_b+2)/2
122 n_all_b = n_nb*(l_b+3)/3
125 & n_na,n_all_a,n_nb,n_all_b
129 n_bas_b = n_nb*n_cont_b
131 n_pbas_b = n_nb*n_prim_b
132 n_abp = n_bas_a*n_nb
172 i_Qp = i_intp+n_pbas_a*n_nb
382 j = j+n_nb
387 & 1,n_pbas_a,1,n_nb,1,n_na,1,n_nb,
396 & 1,n_pbas_a,1,n_nb,1,n_na,1,n_nb,
[all …]
H A Decp_local0.F6 & l_b,n_prim_b,n_cont_b,coef_b,zeta_b,n_nb,
61 integer l_a,n_prim_a,n_cont_a,n_na,l_b,n_prim_b,n_cont_b,n_nb,
73 & tmp(l_tmp),ecp_ints(n_na,n_cont_a,n_nb,n_cont_b),
92 n_all_b = n_cont_b*n_nb
153 i_free = i_scr+max(n_na*n_nb,n_ang)
176 call ecp_cstrans (l_b,n_nb,n_na,l_c,l_c,l_cmp,tmp(i_scr),
179 & 1,n_nb,1,n_na,1,n_nb,'Angular integrals','F',78,4)
180 call ecp_angrad (n_na,n_cont_a,n_nb,n_cont_b,
H A Decp_int2.F84 & n_na,n_all_a,n_nsa,n_ta,n_nb,n_all_b,n_nsb,n_tb,
121 n_nb = (l_b+1)*(l_b+2)/2
122 n_all_b = n_nb*(l_b+3)/3
140 i_Ga = i_cb+n_nb*n_all_b
144 & 3*l_b+n_nb**2)+3
149 & n_nb,n_all_b,l_sb,n_nsb,n_tb
479 i_wb = i_wa+n_nb*n_ang_a
480 i_free = i_wb+n_na*n_nb
514 & 1,n_ang_a,1,n_nb,1,n_ang_a,1,n_nb,
549 & 1,n_na,1,n_nb,
[all …]
H A Decp_int0.F6 & l_b,n_prim_b,n_cont_b,coef_b,zeta_b,n_nb, argument
71 integer l_a,n_prim_a,n_cont_a,n_na,l_b,n_prim_b,n_cont_b,n_nb, local
86 & tmp(l_tmp),ecp_ints(n_na,n_cont_a,n_nb,n_cont_b,n_blk),
105 n_all_b = n_cont_b*n_nb
192 i_free = i_scr+max(n_na*n_nb,n_ang)
264 call ecp_cstrans (l_b,n_nb,n_na,l_c,l_c,l_cmp,tmp(i_scr),
267 & 1,n_nb,1,n_na,1,n_nb,'Angular integrals','F',78,4)
271 call ecp_angrad (n_na,n_cont_a,n_nb,n_cont_b,
/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/NWints/ecp/
H A Decp_local1.F121 n_nb = (l_b+1)*(l_b+2)/2
124 & n_na,n_all_a,l_sa,n_nsa,n_ta,n_nb
274 i_ang_a = i_ang+max(n_ang_a*n_nb,n_ang_t)
276 i_free = i_ang_a+max(n_ang_t,n_na*n_nb)
316 n_ang_t = n_ang_a*n_nb
347 call dgemm ('N','T',n_nb,n_na,n_l,fac,
349 & tmp(i_z),n_nb)
356 call dgemm ('N','T',n_na,n_nb,n_l,fac,
360 & 1,n_nb,1,n_na,1,n_nb,'Completed angular ints',
365 i_ang_a = i_ang_a+n_l*n_nb
[all …]
H A Decp_int1.F141 n_nb = (l_b+1)*(l_b+2)/2
144 & n_na,n_all_a,l_sa,n_nsa,n_ta,n_nb
330 i_ang_a = i_ang+max(n_ang_a*n_nb*n_x,n_ang_t)
332 i_free = i_ang_a+max(n_ang_t*n_x,n_na*n_nb)
386 n_ang_t = n_ang_a*n_nb
390 call ecp_matpr (tmp(i),1,n_nb,1,n_ang_a,
426 call dgemm ('N','T',n_nb,n_na,n_l,fac,
428 & tmp(i_z),n_nb)
439 & 1,n_nb,1,n_na,1,n_nb,'Completed angular ints',
444 i_ang_a = i_ang_a+n_l*n_nb
[all …]
H A Decp_local2.F121 n_nb = (l_b+1)*(l_b+2)/2
122 n_all_b = n_nb*(l_b+3)/3
125 & n_na,n_all_a,n_nb,n_all_b
129 n_bas_b = n_nb*n_cont_b
131 n_pbas_b = n_nb*n_prim_b
132 n_abp = n_bas_a*n_nb
172 i_Qp = i_intp+n_pbas_a*n_nb
382 j = j+n_nb
387 & 1,n_pbas_a,1,n_nb,1,n_na,1,n_nb,
396 & 1,n_pbas_a,1,n_nb,1,n_na,1,n_nb,
[all …]
H A Decp_local0.F6 & l_b,n_prim_b,n_cont_b,coef_b,zeta_b,n_nb, argument
61 integer l_a,n_prim_a,n_cont_a,n_na,l_b,n_prim_b,n_cont_b,n_nb, local
73 & tmp(l_tmp),ecp_ints(n_na,n_cont_a,n_nb,n_cont_b),
92 n_all_b = n_cont_b*n_nb
153 i_free = i_scr+max(n_na*n_nb,n_ang)
176 call ecp_cstrans (l_b,n_nb,n_na,l_c,l_c,l_cmp,tmp(i_scr),
179 & 1,n_nb,1,n_na,1,n_nb,'Angular integrals','F',78,4)
180 call ecp_angrad (n_na,n_cont_a,n_nb,n_cont_b,
H A Decp_int2.F84 & n_na,n_all_a,n_nsa,n_ta,n_nb,n_all_b,n_nsb,n_tb, local
121 n_nb = (l_b+1)*(l_b+2)/2
122 n_all_b = n_nb*(l_b+3)/3
140 i_Ga = i_cb+n_nb*n_all_b
144 & 3*l_b+n_nb**2)+3
149 & n_nb,n_all_b,l_sb,n_nsb,n_tb
479 i_wb = i_wa+n_nb*n_ang_a
480 i_free = i_wb+n_na*n_nb
514 & 1,n_ang_a,1,n_nb,1,n_ang_a,1,n_nb,
549 & 1,n_na,1,n_nb,
[all …]
H A Decp_int0.F6 & l_b,n_prim_b,n_cont_b,coef_b,zeta_b,n_nb, argument
71 integer l_a,n_prim_a,n_cont_a,n_na,l_b,n_prim_b,n_cont_b,n_nb, local
86 & tmp(l_tmp),ecp_ints(n_na,n_cont_a,n_nb,n_cont_b,n_blk),
105 n_all_b = n_cont_b*n_nb
192 i_free = i_scr+max(n_na*n_nb,n_ang)
264 call ecp_cstrans (l_b,n_nb,n_na,l_c,l_c,l_cmp,tmp(i_scr),
267 & 1,n_nb,1,n_na,1,n_nb,'Angular integrals','F',78,4)
271 call ecp_angrad (n_na,n_cont_a,n_nb,n_cont_b,
/dports/math/libmesh/libmesh-1.6.2/src/mesh/
H A Dmesh_subdivision_support.C391 unsigned int n_nb = 0; in add_boundary_ghosts() local
398 n_nb++; in add_boundary_ghosts()
413 if (n_nb < 4) in add_boundary_ghosts()
/dports/math/cgal/CGAL-5.3/include/CGAL/
H A DPeriodic_3_triangulation_3.h3697 int n_nb;
3698 if(nboff.is_null()) n_nb = n;
3703 n_nb = 9*o_i+3*o_j+o_k-1;
3705 if(n_nb == -1) {
3715 CGAL_triangulation_assertion(n_nb >= 0);
3744 int n_nb = 9*o_i+3*o_j+o_k-1;
3745 CGAL_triangulation_assertion(n_nb >= 0);
3748 CGAL_triangulation_assertion(c_cp_nb->second[n_nb]
3750 CGAL_triangulation_assertion(c_cp_nb->second[n_nb]
3752 CGAL_triangulation_assertion(c_cp_nb->second[n_nb]
[all …]
H A DPeriodic_2_triangulation_2.h3364 int n_nb; in convert_to_9_sheeted_covering() local
3366 n_nb = n; in convert_to_9_sheeted_covering()
3371 n_nb = 3 * o_i + o_j - 1; in convert_to_9_sheeted_covering()
3373 if (n_nb == -1) in convert_to_9_sheeted_covering()
3381 CGAL_triangulation_assertion(n_nb >= 0); in convert_to_9_sheeted_covering()
3385 c_cp->second[n]->set_neighbor(i, c_cp_nb->second[n_nb]); in convert_to_9_sheeted_covering()
3407 int n_nb = 3 * o_i + o_j - 1; in convert_to_9_sheeted_covering() local
3408 CGAL_triangulation_assertion(n_nb >= 0); in convert_to_9_sheeted_covering()
3409 … CGAL_triangulation_assertion(static_cast<unsigned int>(n_nb) <= c_cp_nb->second.size()); in convert_to_9_sheeted_covering()
3410 … CGAL_triangulation_assertion(c_cp_nb->second[n_nb]->has_vertex((*fit)->vertex(ccw(i))) ); in convert_to_9_sheeted_covering()
[all …]
/dports/science/checkmol/checkmol-0.5_11/
H A Dcheckmol11371 n_nb, n_hc : integer;
12222 n_nb : integer;
12250 n_nb : integer;
12513 for j := 1 to n_nb do
12599 for k := 1 to n_nb do
12727 n_nb : integer;
13327 n_nb : smallint;
13366 if (n_nb > 0) then
13368 for j := 1 to n_nb do
13573 n_nb : smallint;
[all …]
/dports/math/suitesparse-klu/SuiteSparse-5.10.1/UMFPACK/Tcov/
H A Dut.c2461 i_tol, i_nb, i_init, n_tol, n_nb, n_init, n_scale, i_scale, scale, in do_matrix() local
2616 n_nb = Ncontrols [UMFPACK_BLOCK_SIZE] ; in do_matrix()
2622 2 + (cs * rs * n_tol * n_nb * n_init )) ; in do_matrix()
2696 for (i_nb = 0 ; i_nb < n_nb ; i_nb++) in do_matrix()
/dports/math/suitesparse-graphblas/SuiteSparse-5.10.1/UMFPACK/Tcov/
H A Dut.c2461 i_tol, i_nb, i_init, n_tol, n_nb, n_init, n_scale, i_scale, scale, in do_matrix() local
2616 n_nb = Ncontrols [UMFPACK_BLOCK_SIZE] ; in do_matrix()
2622 2 + (cs * rs * n_tol * n_nb * n_init )) ; in do_matrix()
2696 for (i_nb = 0 ; i_nb < n_nb ; i_nb++) in do_matrix()
/dports/math/suitesparse-config/SuiteSparse-5.10.1/UMFPACK/Tcov/
H A Dut.c2461 i_tol, i_nb, i_init, n_tol, n_nb, n_init, n_scale, i_scale, scale, in do_matrix() local
2616 n_nb = Ncontrols [UMFPACK_BLOCK_SIZE] ; in do_matrix()
2622 2 + (cs * rs * n_tol * n_nb * n_init )) ; in do_matrix()
2696 for (i_nb = 0 ; i_nb < n_nb ; i_nb++) in do_matrix()
/dports/math/suitesparse-amd/SuiteSparse-5.10.1/UMFPACK/Tcov/
H A Dut.c2461 i_tol, i_nb, i_init, n_tol, n_nb, n_init, n_scale, i_scale, scale, in do_matrix() local
2616 n_nb = Ncontrols [UMFPACK_BLOCK_SIZE] ; in do_matrix()
2622 2 + (cs * rs * n_tol * n_nb * n_init )) ; in do_matrix()
2696 for (i_nb = 0 ; i_nb < n_nb ; i_nb++) in do_matrix()
/dports/math/suitesparse-ldl/SuiteSparse-5.10.1/UMFPACK/Tcov/
H A Dut.c2461 i_tol, i_nb, i_init, n_tol, n_nb, n_init, n_scale, i_scale, scale, in do_matrix() local
2616 n_nb = Ncontrols [UMFPACK_BLOCK_SIZE] ; in do_matrix()
2622 2 + (cs * rs * n_tol * n_nb * n_init )) ; in do_matrix()
2696 for (i_nb = 0 ; i_nb < n_nb ; i_nb++) in do_matrix()
/dports/math/suitesparse-rbio/SuiteSparse-5.10.1/UMFPACK/Tcov/
H A Dut.c2461 i_tol, i_nb, i_init, n_tol, n_nb, n_init, n_scale, i_scale, scale, in do_matrix() local
2616 n_nb = Ncontrols [UMFPACK_BLOCK_SIZE] ; in do_matrix()
2622 2 + (cs * rs * n_tol * n_nb * n_init )) ; in do_matrix()
2696 for (i_nb = 0 ; i_nb < n_nb ; i_nb++) in do_matrix()

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