/dports/biology/gemma/GEMMA-0.98.3/src/ |
H A D | varcov.cpp | 188 n_nb = 0; in CalcNB() 205 n_nb++; in CalcNB() 213 snpInfo_sort[t].n_nb = n_nb; in CalcNB() 279 int n_nb = 0; in AnalyzeBimbam() local 290 n_nb = snpInfo[t].n_nb + 1; in AnalyzeBimbam() 292 n_nb = snpInfo[t].n_nb - n_nb + 1; in AnalyzeBimbam() 318 n_nb = snpInfo[t].n_nb; in AnalyzeBimbam() 379 int n_nb = 0; in AnalyzePlink() local 390 n_nb = snpInfo[t].n_nb + 1; in AnalyzePlink() 392 n_nb = snpInfo[t].n_nb - n_nb + 1; in AnalyzePlink() [all …]
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H A D | vc.cpp | 1024 size_t n_nb, nsamp1, nsamp2, n12, bin_size = 10, bin; in ReadFile_cor() local 1139 n_nb = 0; in ReadFile_cor() 1145 rs2 = vec_rs[ns_total + n_nb + 1]; in ReadFile_cor() 1146 d_pos2 = vec_bp[ns_total + n_nb + 1]; in ReadFile_cor() 1147 d_cm2 = vec_cm[ns_total + n_nb + 1]; in ReadFile_cor() 1156 1.0 / (double)min(vec_n[ns_total], vec_n[ns_total + n_nb + 1]); in ReadFile_cor() 1159 n12 = min(vec_n[ns_total], vec_n[ns_total + n_nb + 1]); in ReadFile_cor() 1170 bin = min((int)floor(((double)n_nb + 1) / window_ns * bin_size), in ReadFile_cor() 1208 n_nb++; in ReadFile_cor()
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H A D | param.h | 49 size_t n_nb; // Number of neighbours on the right hand side. variable
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/dports/science/nwchem-data/nwchem-7.0.2-release/src/NWints/ecp/ |
H A D | ecp_local1.F | 121 n_nb = (l_b+1)*(l_b+2)/2 124 & n_na,n_all_a,l_sa,n_nsa,n_ta,n_nb 274 i_ang_a = i_ang+max(n_ang_a*n_nb,n_ang_t) 276 i_free = i_ang_a+max(n_ang_t,n_na*n_nb) 316 n_ang_t = n_ang_a*n_nb 347 call dgemm ('N','T',n_nb,n_na,n_l,fac, 349 & tmp(i_z),n_nb) 356 call dgemm ('N','T',n_na,n_nb,n_l,fac, 360 & 1,n_nb,1,n_na,1,n_nb,'Completed angular ints', 365 i_ang_a = i_ang_a+n_l*n_nb [all …]
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H A D | ecp_int1.F | 141 n_nb = (l_b+1)*(l_b+2)/2 144 & n_na,n_all_a,l_sa,n_nsa,n_ta,n_nb 330 i_ang_a = i_ang+max(n_ang_a*n_nb*n_x,n_ang_t) 332 i_free = i_ang_a+max(n_ang_t*n_x,n_na*n_nb) 386 n_ang_t = n_ang_a*n_nb 390 call ecp_matpr (tmp(i),1,n_nb,1,n_ang_a, 426 call dgemm ('N','T',n_nb,n_na,n_l,fac, 428 & tmp(i_z),n_nb) 439 & 1,n_nb,1,n_na,1,n_nb,'Completed angular ints', 444 i_ang_a = i_ang_a+n_l*n_nb [all …]
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H A D | ecp_local2.F | 121 n_nb = (l_b+1)*(l_b+2)/2 122 n_all_b = n_nb*(l_b+3)/3 125 & n_na,n_all_a,n_nb,n_all_b 129 n_bas_b = n_nb*n_cont_b 131 n_pbas_b = n_nb*n_prim_b 132 n_abp = n_bas_a*n_nb 172 i_Qp = i_intp+n_pbas_a*n_nb 382 j = j+n_nb 387 & 1,n_pbas_a,1,n_nb,1,n_na,1,n_nb, 396 & 1,n_pbas_a,1,n_nb,1,n_na,1,n_nb, [all …]
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H A D | ecp_local0.F | 6 & l_b,n_prim_b,n_cont_b,coef_b,zeta_b,n_nb, 61 integer l_a,n_prim_a,n_cont_a,n_na,l_b,n_prim_b,n_cont_b,n_nb, 73 & tmp(l_tmp),ecp_ints(n_na,n_cont_a,n_nb,n_cont_b), 92 n_all_b = n_cont_b*n_nb 153 i_free = i_scr+max(n_na*n_nb,n_ang) 176 call ecp_cstrans (l_b,n_nb,n_na,l_c,l_c,l_cmp,tmp(i_scr), 179 & 1,n_nb,1,n_na,1,n_nb,'Angular integrals','F',78,4) 180 call ecp_angrad (n_na,n_cont_a,n_nb,n_cont_b,
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H A D | ecp_int2.F | 84 & n_na,n_all_a,n_nsa,n_ta,n_nb,n_all_b,n_nsb,n_tb, 121 n_nb = (l_b+1)*(l_b+2)/2 122 n_all_b = n_nb*(l_b+3)/3 140 i_Ga = i_cb+n_nb*n_all_b 144 & 3*l_b+n_nb**2)+3 149 & n_nb,n_all_b,l_sb,n_nsb,n_tb 479 i_wb = i_wa+n_nb*n_ang_a 480 i_free = i_wb+n_na*n_nb 514 & 1,n_ang_a,1,n_nb,1,n_ang_a,1,n_nb, 549 & 1,n_na,1,n_nb, [all …]
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H A D | ecp_int0.F | 6 & l_b,n_prim_b,n_cont_b,coef_b,zeta_b,n_nb, argument 71 integer l_a,n_prim_a,n_cont_a,n_na,l_b,n_prim_b,n_cont_b,n_nb, local 86 & tmp(l_tmp),ecp_ints(n_na,n_cont_a,n_nb,n_cont_b,n_blk), 105 n_all_b = n_cont_b*n_nb 192 i_free = i_scr+max(n_na*n_nb,n_ang) 264 call ecp_cstrans (l_b,n_nb,n_na,l_c,l_c,l_cmp,tmp(i_scr), 267 & 1,n_nb,1,n_na,1,n_nb,'Angular integrals','F',78,4) 271 call ecp_angrad (n_na,n_cont_a,n_nb,n_cont_b,
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/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/NWints/ecp/ |
H A D | ecp_local1.F | 121 n_nb = (l_b+1)*(l_b+2)/2 124 & n_na,n_all_a,l_sa,n_nsa,n_ta,n_nb 274 i_ang_a = i_ang+max(n_ang_a*n_nb,n_ang_t) 276 i_free = i_ang_a+max(n_ang_t,n_na*n_nb) 316 n_ang_t = n_ang_a*n_nb 347 call dgemm ('N','T',n_nb,n_na,n_l,fac, 349 & tmp(i_z),n_nb) 356 call dgemm ('N','T',n_na,n_nb,n_l,fac, 360 & 1,n_nb,1,n_na,1,n_nb,'Completed angular ints', 365 i_ang_a = i_ang_a+n_l*n_nb [all …]
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H A D | ecp_int1.F | 141 n_nb = (l_b+1)*(l_b+2)/2 144 & n_na,n_all_a,l_sa,n_nsa,n_ta,n_nb 330 i_ang_a = i_ang+max(n_ang_a*n_nb*n_x,n_ang_t) 332 i_free = i_ang_a+max(n_ang_t*n_x,n_na*n_nb) 386 n_ang_t = n_ang_a*n_nb 390 call ecp_matpr (tmp(i),1,n_nb,1,n_ang_a, 426 call dgemm ('N','T',n_nb,n_na,n_l,fac, 428 & tmp(i_z),n_nb) 439 & 1,n_nb,1,n_na,1,n_nb,'Completed angular ints', 444 i_ang_a = i_ang_a+n_l*n_nb [all …]
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H A D | ecp_local2.F | 121 n_nb = (l_b+1)*(l_b+2)/2 122 n_all_b = n_nb*(l_b+3)/3 125 & n_na,n_all_a,n_nb,n_all_b 129 n_bas_b = n_nb*n_cont_b 131 n_pbas_b = n_nb*n_prim_b 132 n_abp = n_bas_a*n_nb 172 i_Qp = i_intp+n_pbas_a*n_nb 382 j = j+n_nb 387 & 1,n_pbas_a,1,n_nb,1,n_na,1,n_nb, 396 & 1,n_pbas_a,1,n_nb,1,n_na,1,n_nb, [all …]
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H A D | ecp_local0.F | 6 & l_b,n_prim_b,n_cont_b,coef_b,zeta_b,n_nb, argument 61 integer l_a,n_prim_a,n_cont_a,n_na,l_b,n_prim_b,n_cont_b,n_nb, local 73 & tmp(l_tmp),ecp_ints(n_na,n_cont_a,n_nb,n_cont_b), 92 n_all_b = n_cont_b*n_nb 153 i_free = i_scr+max(n_na*n_nb,n_ang) 176 call ecp_cstrans (l_b,n_nb,n_na,l_c,l_c,l_cmp,tmp(i_scr), 179 & 1,n_nb,1,n_na,1,n_nb,'Angular integrals','F',78,4) 180 call ecp_angrad (n_na,n_cont_a,n_nb,n_cont_b,
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H A D | ecp_int2.F | 84 & n_na,n_all_a,n_nsa,n_ta,n_nb,n_all_b,n_nsb,n_tb, local 121 n_nb = (l_b+1)*(l_b+2)/2 122 n_all_b = n_nb*(l_b+3)/3 140 i_Ga = i_cb+n_nb*n_all_b 144 & 3*l_b+n_nb**2)+3 149 & n_nb,n_all_b,l_sb,n_nsb,n_tb 479 i_wb = i_wa+n_nb*n_ang_a 480 i_free = i_wb+n_na*n_nb 514 & 1,n_ang_a,1,n_nb,1,n_ang_a,1,n_nb, 549 & 1,n_na,1,n_nb, [all …]
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H A D | ecp_int0.F | 6 & l_b,n_prim_b,n_cont_b,coef_b,zeta_b,n_nb, argument 71 integer l_a,n_prim_a,n_cont_a,n_na,l_b,n_prim_b,n_cont_b,n_nb, local 86 & tmp(l_tmp),ecp_ints(n_na,n_cont_a,n_nb,n_cont_b,n_blk), 105 n_all_b = n_cont_b*n_nb 192 i_free = i_scr+max(n_na*n_nb,n_ang) 264 call ecp_cstrans (l_b,n_nb,n_na,l_c,l_c,l_cmp,tmp(i_scr), 267 & 1,n_nb,1,n_na,1,n_nb,'Angular integrals','F',78,4) 271 call ecp_angrad (n_na,n_cont_a,n_nb,n_cont_b,
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/dports/math/libmesh/libmesh-1.6.2/src/mesh/ |
H A D | mesh_subdivision_support.C | 391 unsigned int n_nb = 0; in add_boundary_ghosts() local 398 n_nb++; in add_boundary_ghosts() 413 if (n_nb < 4) in add_boundary_ghosts()
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/dports/math/cgal/CGAL-5.3/include/CGAL/ |
H A D | Periodic_3_triangulation_3.h | 3697 int n_nb; 3698 if(nboff.is_null()) n_nb = n; 3703 n_nb = 9*o_i+3*o_j+o_k-1; 3705 if(n_nb == -1) { 3715 CGAL_triangulation_assertion(n_nb >= 0); 3744 int n_nb = 9*o_i+3*o_j+o_k-1; 3745 CGAL_triangulation_assertion(n_nb >= 0); 3748 CGAL_triangulation_assertion(c_cp_nb->second[n_nb] 3750 CGAL_triangulation_assertion(c_cp_nb->second[n_nb] 3752 CGAL_triangulation_assertion(c_cp_nb->second[n_nb] [all …]
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H A D | Periodic_2_triangulation_2.h | 3364 int n_nb; in convert_to_9_sheeted_covering() local 3366 n_nb = n; in convert_to_9_sheeted_covering() 3371 n_nb = 3 * o_i + o_j - 1; in convert_to_9_sheeted_covering() 3373 if (n_nb == -1) in convert_to_9_sheeted_covering() 3381 CGAL_triangulation_assertion(n_nb >= 0); in convert_to_9_sheeted_covering() 3385 c_cp->second[n]->set_neighbor(i, c_cp_nb->second[n_nb]); in convert_to_9_sheeted_covering() 3407 int n_nb = 3 * o_i + o_j - 1; in convert_to_9_sheeted_covering() local 3408 CGAL_triangulation_assertion(n_nb >= 0); in convert_to_9_sheeted_covering() 3409 … CGAL_triangulation_assertion(static_cast<unsigned int>(n_nb) <= c_cp_nb->second.size()); in convert_to_9_sheeted_covering() 3410 … CGAL_triangulation_assertion(c_cp_nb->second[n_nb]->has_vertex((*fit)->vertex(ccw(i))) ); in convert_to_9_sheeted_covering() [all …]
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/dports/science/checkmol/checkmol-0.5_11/ |
H A D | checkmol | 11371 n_nb, n_hc : integer; 12222 n_nb : integer; 12250 n_nb : integer; 12513 for j := 1 to n_nb do 12599 for k := 1 to n_nb do 12727 n_nb : integer; 13327 n_nb : smallint; 13366 if (n_nb > 0) then 13368 for j := 1 to n_nb do 13573 n_nb : smallint; [all …]
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/dports/math/suitesparse-klu/SuiteSparse-5.10.1/UMFPACK/Tcov/ |
H A D | ut.c | 2461 i_tol, i_nb, i_init, n_tol, n_nb, n_init, n_scale, i_scale, scale, in do_matrix() local 2616 n_nb = Ncontrols [UMFPACK_BLOCK_SIZE] ; in do_matrix() 2622 2 + (cs * rs * n_tol * n_nb * n_init )) ; in do_matrix() 2696 for (i_nb = 0 ; i_nb < n_nb ; i_nb++) in do_matrix()
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/dports/math/suitesparse-graphblas/SuiteSparse-5.10.1/UMFPACK/Tcov/ |
H A D | ut.c | 2461 i_tol, i_nb, i_init, n_tol, n_nb, n_init, n_scale, i_scale, scale, in do_matrix() local 2616 n_nb = Ncontrols [UMFPACK_BLOCK_SIZE] ; in do_matrix() 2622 2 + (cs * rs * n_tol * n_nb * n_init )) ; in do_matrix() 2696 for (i_nb = 0 ; i_nb < n_nb ; i_nb++) in do_matrix()
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/dports/math/suitesparse-config/SuiteSparse-5.10.1/UMFPACK/Tcov/ |
H A D | ut.c | 2461 i_tol, i_nb, i_init, n_tol, n_nb, n_init, n_scale, i_scale, scale, in do_matrix() local 2616 n_nb = Ncontrols [UMFPACK_BLOCK_SIZE] ; in do_matrix() 2622 2 + (cs * rs * n_tol * n_nb * n_init )) ; in do_matrix() 2696 for (i_nb = 0 ; i_nb < n_nb ; i_nb++) in do_matrix()
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/dports/math/suitesparse-amd/SuiteSparse-5.10.1/UMFPACK/Tcov/ |
H A D | ut.c | 2461 i_tol, i_nb, i_init, n_tol, n_nb, n_init, n_scale, i_scale, scale, in do_matrix() local 2616 n_nb = Ncontrols [UMFPACK_BLOCK_SIZE] ; in do_matrix() 2622 2 + (cs * rs * n_tol * n_nb * n_init )) ; in do_matrix() 2696 for (i_nb = 0 ; i_nb < n_nb ; i_nb++) in do_matrix()
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/dports/math/suitesparse-ldl/SuiteSparse-5.10.1/UMFPACK/Tcov/ |
H A D | ut.c | 2461 i_tol, i_nb, i_init, n_tol, n_nb, n_init, n_scale, i_scale, scale, in do_matrix() local 2616 n_nb = Ncontrols [UMFPACK_BLOCK_SIZE] ; in do_matrix() 2622 2 + (cs * rs * n_tol * n_nb * n_init )) ; in do_matrix() 2696 for (i_nb = 0 ; i_nb < n_nb ; i_nb++) in do_matrix()
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/dports/math/suitesparse-rbio/SuiteSparse-5.10.1/UMFPACK/Tcov/ |
H A D | ut.c | 2461 i_tol, i_nb, i_init, n_tol, n_nb, n_init, n_scale, i_scale, scale, in do_matrix() local 2616 n_nb = Ncontrols [UMFPACK_BLOCK_SIZE] ; in do_matrix() 2622 2 + (cs * rs * n_tol * n_nb * n_init )) ; in do_matrix() 2696 for (i_nb = 0 ; i_nb < n_nb ; i_nb++) in do_matrix()
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