Searched refs:ngapA (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/infernal/infernal-1.1.3/easel/miniapps/ |
| H A D | esl-alimerge.c | 508 free(ngapA); in main()
1101 if(ngapA != NULL) free(ngapA); in validate_and_copy_msa_annotation()
1110 if(ngapA != NULL) free(ngapA); in validate_and_copy_msa_annotation()
1359 if(ngapA != NULL) free(ngapA); in add_msa()
1365 if(ngapA != NULL) free(ngapA); in add_msa()
1406 if(ngapA) for(i = 0; i < ngapA[0]; i++) dst_str[dst_apos++] = gapchar; in inflate_string_with_gaps_and_missing()
1500 if(ngapA) for(i = 0; i < ngapA[0]; i++) dst_str[dst_apos++] = char2add; in inflate_seq_with_gaps()
1586 int *ngapA = NULL; in determine_gap_columns_to_add() local
1658 if(ngapA != NULL) free(ngapA); in determine_gap_columns_to_add()
1681 *ret_ngapA = ngapA; in determine_gap_columns_to_add()
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| /dports/biology/hmmer/hmmer-3.3/easel/miniapps/ |
| H A D | esl-alimerge.c | 508 free(ngapA); in main()
1101 if(ngapA != NULL) free(ngapA); in validate_and_copy_msa_annotation()
1110 if(ngapA != NULL) free(ngapA); in validate_and_copy_msa_annotation()
1359 if(ngapA != NULL) free(ngapA); in add_msa()
1365 if(ngapA != NULL) free(ngapA); in add_msa()
1406 if(ngapA) for(i = 0; i < ngapA[0]; i++) dst_str[dst_apos++] = gapchar; in inflate_string_with_gaps_and_missing()
1500 if(ngapA) for(i = 0; i < ngapA[0]; i++) dst_str[dst_apos++] = char2add; in inflate_seq_with_gaps()
1586 int *ngapA = NULL; in determine_gap_columns_to_add() local
1658 if(ngapA != NULL) free(ngapA); in determine_gap_columns_to_add()
1681 *ret_ngapA = ngapA; in determine_gap_columns_to_add()
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| /dports/biology/infernal/infernal-1.1.3/easel/ |
| H A D | esl_msafile2.c | 272 static int gapize_string(char *src_str, int64_t src_len, int64_t dst_len, int *ngapA, char gapchar…
1092 gapize_string(char *src_str, int64_t src_len, int64_t dst_len, int *ngapA, char gapchar, char **ret… in gapize_string() argument
1104 for(i = 0; i < ngapA[0]; i++) dst_str[dst_apos++] = gapchar; in gapize_string()
1109 for(i = 0; i < ngapA[(src_apos+1)]; i++) dst_str[dst_apos++] = gapchar; in gapize_string()
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| /dports/biology/hmmer/hmmer-3.3/easel/ |
| H A D | esl_msafile2.c | 272 static int gapize_string(char *src_str, int64_t src_len, int64_t dst_len, int *ngapA, char gapchar…
1092 gapize_string(char *src_str, int64_t src_len, int64_t dst_len, int *ngapA, char gapchar, char **ret… in gapize_string() argument
1104 for(i = 0; i < ngapA[0]; i++) dst_str[dst_apos++] = gapchar; in gapize_string()
1109 for(i = 0; i < ngapA[(src_apos+1)]; i++) dst_str[dst_apos++] = gapchar; in gapize_string()
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