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/dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/
H A Dmodel_details.i24 int noGU; member
65 const int noGU = vrna_md_defaults_noGU_get(),
91 md->noGU = noGU;
149 out << ", noGU: " << $self->noGU ; in __str__()
210 extern int noGU;
H A Dmodel_details.dox32 | noGU | vrna_md_defaults_noGU_get() | vrna_md_defaults_noGU() |
/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/
H A Dmodel.c54 int noGU = VRNA_MODEL_DEFAULT_NO_GU; variable
226 if (md->noGU) in vrna_md_option_string()
317 defaults.noGU = VRNA_MODEL_DEFAULT_NO_GU; in vrna_md_defaults_reset()
351 vrna_md_defaults_noGU(md_p->noGU); in vrna_md_defaults_reset()
384 noGU = defaults.noGU; in vrna_md_defaults_reset()
514 defaults.noGU = flag ? 1 : 0; in vrna_md_defaults_noGU()
516 noGU = defaults.noGU; in vrna_md_defaults_noGU()
526 return defaults.noGU; in vrna_md_defaults_noGU_get()
947 if (md->noGU) in prepare_default_pairs()
975 md->noGU = noGU; in set_model_details()
H A Dmodel.h210 int noGU; /**< @brief Do not allow GU pairs */ member
817 extern int noGU;
H A Dpair_mat.h94 if (noGU) in make_pair_matrix()
/dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Python3/
H A Dglobals-md.i71 %typemap(varin) int noGU {
75 %typemap(varout) int noGU {
/dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Python/
H A Dglobals-md.i71 %typemap(varin) int noGU {
75 %typemap(varout) int noGU {
/dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Perl/
H A Dglobals-md.i70 %typemap(varin) int noGU {
74 %typemap(varout) int noGU {
/dports/biology/viennarna/ViennaRNA-2.4.18/src/bin/
H A Dgengetopt_helper.h31 noGU = (int)dest; \
177 ggo_get_noGU(ggostruct, md.noGU); \
H A DRNAPKplex.c106 md.noGU = noGU = 1; in main()
H A DRNApdist.c309 md->noGU = noGU = 1; in command_line()
H A DRNALfold.c154 md.noGU = noGU = 1; in main()
H A DRNA2Dfold.c130 md.noGU = noGU = 1; in main()
H A DRNAaliduplex.c80 noGU = 1; in main()
H A DRNAduplex.c80 noGU = 1; in main()
H A DRNApvmin.c158 md.noGU = 1; in main()
H A DRNAinverse.c86 noGU = 1; in main()
H A DRNAplfold.c218 md.noGU = noGU = 1; in main()
H A DRNApaln.c304 noGU = 1; in command_line()
H A DRNA2Dfold.ggo109 option "noGU" -
H A DRNAPKplex.ggo41 option "noGU" -
H A DRNApdist.ggo81 option "noGU" -
H A DRNAaliduplex.ggo74 option "noGU" -
H A DRNAduplex.ggo80 option "noGU" -
/dports/biology/viennarna/ViennaRNA-2.4.18/src/Utils/
H A DRNAdesign.pl50 "noGU" => \$RNA::noGU,

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