/dports/science/gromacs/gromacs-2021.4/src/gromacs/gmxpreprocess/ |
H A D | nm2type.cpp | 207 int nresolved, nb, maxbond, nqual[2][ematchNR]; in nm2type() local 263 nqual[prev][k] = 0; in nm2type() 276 nqual[cur][j] = 0; in nm2type() 305 nqual[cur][j]++; in nm2type() 310 … if ((nqual[cur][ematchExact] + nqual[cur][ematchElem] + nqual[cur][ematchWild]) == nb) in nm2type() 312 if ((nqual[cur][ematchExact] > nqual[prev][ematchExact]) || in nm2type() 314 ((nqual[cur][ematchExact] == nqual[prev][ematchExact]) in nm2type() 315 && (nqual[cur][ematchElem] > nqual[prev][ematchElem])) in nm2type() 318 ((nqual[cur][ematchExact] == nqual[prev][ematchExact]) in nm2type() 319 && (nqual[cur][ematchElem] == nqual[prev][ematchElem]) in nm2type() [all …]
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/dports/comms/wsjtz/wsjtx/lib/ |
H A D | avecho.f90 | 83 nqual=0 84 if(nsum.ge.2 .and. nsum.lt.4) nqual=(snr-4)/5 85 if(nsum.ge.4 .and. nsum.lt.8) nqual=(snr-3)/4 86 if(nsum.ge.8 .and. nsum.lt.12) nqual=(snr-3)/3 87 if(nsum.ge.12) nqual=(snr-2.5)/2.5 88 if(nqual.lt.0) nqual=0 89 if(nqual.gt.10) nqual=10
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/dports/biology/bcftools/bcftools-1.14/ |
H A D | bam2bcf.c | 63 bca->nqual = 60; in bcf_call_init() 88 bca->nqual = 0; in bcf_call_destroy() 150 memset(bca->ref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 151 memset(bca->alt_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 152 memset(bca->iref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 153 memset(bca->ialt_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 154 memset(bca->ref_bq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 155 memset(bca->alt_bq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 156 memset(bca->fwd_mqs,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 157 memset(bca->rev_mqs,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() [all …]
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/dports/biology/bio-mocha/bcftools-1.14/ |
H A D | bam2bcf.c | 63 bca->nqual = 60; in bcf_call_init() 88 bca->nqual = 0; in bcf_call_destroy() 150 memset(bca->ref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 151 memset(bca->alt_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 152 memset(bca->iref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 153 memset(bca->ialt_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 154 memset(bca->ref_bq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 155 memset(bca->alt_bq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 156 memset(bca->fwd_mqs,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 157 memset(bca->rev_mqs,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() [all …]
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/dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
H A D | bam2bcf.c | 63 bca->nqual = 60; in bcf_call_init() 88 bca->nqual = 0; in bcf_call_destroy() 150 memset(bca->ref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 151 memset(bca->alt_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 152 memset(bca->iref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 153 memset(bca->ialt_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 154 memset(bca->ref_bq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 155 memset(bca->alt_bq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 156 memset(bca->fwd_mqs,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 157 memset(bca->rev_mqs,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() [all …]
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H A D | bam2bcf.c.pysam.c | 65 bca->nqual = 60; in bcf_call_init() 90 bca->nqual = 0; in bcf_call_destroy() 152 memset(bca->ref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 153 memset(bca->alt_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 154 memset(bca->iref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 155 memset(bca->ialt_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 156 memset(bca->ref_bq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 157 memset(bca->alt_bq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 158 memset(bca->fwd_mqs,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 159 memset(bca->rev_mqs,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() [all …]
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/dports/biology/py-pysam/pysam-0.18.0/samtools/ |
H A D | bam2bcf.c | 60 bca->nqual = 60; in bcf_call_init() 61 bca->ref_mq = malloc(bca->nqual*sizeof(int)); in bcf_call_init() 62 bca->alt_mq = malloc(bca->nqual*sizeof(int)); in bcf_call_init() 63 bca->ref_bq = malloc(bca->nqual*sizeof(int)); in bcf_call_init() 64 bca->alt_bq = malloc(bca->nqual*sizeof(int)); in bcf_call_init() 65 bca->fwd_mqs = malloc(bca->nqual*sizeof(int)); in bcf_call_init() 66 bca->rev_mqs = malloc(bca->nqual*sizeof(int)); in bcf_call_init() 77 bca->nqual = 0; in bcf_call_destroy() 122 memset(bca->ref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 223 int ibq = baseQ/60. * bca->nqual; in bcf_call_glfgen() [all …]
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H A D | bam2bcf.c.pysam.c | 62 bca->nqual = 60; in bcf_call_init() 63 bca->ref_mq = malloc(bca->nqual*sizeof(int)); in bcf_call_init() 64 bca->alt_mq = malloc(bca->nqual*sizeof(int)); in bcf_call_init() 65 bca->ref_bq = malloc(bca->nqual*sizeof(int)); in bcf_call_init() 66 bca->alt_bq = malloc(bca->nqual*sizeof(int)); in bcf_call_init() 67 bca->fwd_mqs = malloc(bca->nqual*sizeof(int)); in bcf_call_init() 68 bca->rev_mqs = malloc(bca->nqual*sizeof(int)); in bcf_call_init() 79 bca->nqual = 0; in bcf_call_destroy() 124 memset(bca->ref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 225 int ibq = baseQ/60. * bca->nqual; in bcf_call_glfgen() [all …]
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/dports/biology/samtools/samtools-1.14/ |
H A D | bam2bcf.c | 60 bca->nqual = 60; in bcf_call_init() 61 bca->ref_mq = malloc(bca->nqual*sizeof(int)); in bcf_call_init() 62 bca->alt_mq = malloc(bca->nqual*sizeof(int)); in bcf_call_init() 63 bca->ref_bq = malloc(bca->nqual*sizeof(int)); in bcf_call_init() 64 bca->alt_bq = malloc(bca->nqual*sizeof(int)); in bcf_call_init() 65 bca->fwd_mqs = malloc(bca->nqual*sizeof(int)); in bcf_call_init() 66 bca->rev_mqs = malloc(bca->nqual*sizeof(int)); in bcf_call_init() 77 bca->nqual = 0; in bcf_call_destroy() 122 memset(bca->ref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean() 223 int ibq = baseQ/60. * bca->nqual; in bcf_call_glfgen() [all …]
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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/ |
H A D | mismatch-restore-qual.c | 51 unsigned const nqual = ( unsigned const )argv[ 0 ].u.data.elem_count; in mismatch_restore_qual_impl() local 71 assert( j == nqual ); in mismatch_restore_qual_impl() 97 unsigned const nqual = ( unsigned const )argv[ 0 ].u.data.elem_count; in decompress_quality_impl() local 117 assert( j == nqual ); in decompress_quality_impl()
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/axf/ |
H A D | mismatch-restore-qual.c | 51 unsigned const nqual = ( unsigned const )argv[ 0 ].u.data.elem_count; in mismatch_restore_qual_impl() local 71 assert( j == nqual ); in mismatch_restore_qual_impl() 97 unsigned const nqual = ( unsigned const )argv[ 0 ].u.data.elem_count; in decompress_quality_impl() local 117 assert( j == nqual ); in decompress_quality_impl()
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/dports/security/libressl-static/libressl-3.3.5/crypto/x509/ |
H A D | x509_cpols.c | 476 POLICYQUALINFO *nqual = NULL; in policy_section() local 492 if ((nqual = POLICYQUALINFO_new()) == NULL) in policy_section() 494 nqual->pqualid = OBJ_nid2obj(NID_id_qt_cps); in policy_section() 495 nqual->d.cpsuri = ASN1_IA5STRING_new(); in policy_section() 496 if (nqual->d.cpsuri == NULL) in policy_section() 498 if (ASN1_STRING_set(nqual->d.cpsuri, cnf->value, in policy_section() 507 if (sk_POLICYQUALINFO_push(pol->qualifiers, nqual) == 0) in policy_section() 509 nqual = NULL; in policy_section() 554 POLICYQUALINFO_free(nqual); in policy_section()
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/dports/security/libressl/libressl-3.4.3/crypto/x509/ |
H A D | x509_cpols.c | 476 POLICYQUALINFO *nqual = NULL; in policy_section() local 492 if ((nqual = POLICYQUALINFO_new()) == NULL) in policy_section() 494 nqual->pqualid = OBJ_nid2obj(NID_id_qt_cps); in policy_section() 495 nqual->d.cpsuri = ASN1_IA5STRING_new(); in policy_section() 496 if (nqual->d.cpsuri == NULL) in policy_section() 498 if (ASN1_STRING_set(nqual->d.cpsuri, cnf->value, in policy_section() 507 if (sk_POLICYQUALINFO_push(pol->qualifiers, nqual) == 0) in policy_section() 509 nqual = NULL; in policy_section() 554 POLICYQUALINFO_free(nqual); in policy_section()
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/dports/emulators/citra/citra-ac98458e0/externals/libressl/crypto/x509/ |
H A D | x509_cpols.c | 476 POLICYQUALINFO *nqual = NULL; in policy_section() local 492 if ((nqual = POLICYQUALINFO_new()) == NULL) in policy_section() 494 nqual->pqualid = OBJ_nid2obj(NID_id_qt_cps); in policy_section() 495 nqual->d.cpsuri = ASN1_IA5STRING_new(); in policy_section() 496 if (nqual->d.cpsuri == NULL) in policy_section() 498 if (ASN1_STRING_set(nqual->d.cpsuri, cnf->value, in policy_section() 507 if (sk_POLICYQUALINFO_push(pol->qualifiers, nqual) == 0) in policy_section() 509 nqual = NULL; in policy_section() 554 POLICYQUALINFO_free(nqual); in policy_section()
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/dports/emulators/citra-qt5/citra-ac98458e0/externals/libressl/crypto/x509/ |
H A D | x509_cpols.c | 476 POLICYQUALINFO *nqual = NULL; in policy_section() local 492 if ((nqual = POLICYQUALINFO_new()) == NULL) in policy_section() 494 nqual->pqualid = OBJ_nid2obj(NID_id_qt_cps); in policy_section() 495 nqual->d.cpsuri = ASN1_IA5STRING_new(); in policy_section() 496 if (nqual->d.cpsuri == NULL) in policy_section() 498 if (ASN1_STRING_set(nqual->d.cpsuri, cnf->value, in policy_section() 507 if (sk_POLICYQUALINFO_push(pol->qualifiers, nqual) == 0) in policy_section() 509 nqual = NULL; in policy_section() 554 POLICYQUALINFO_free(nqual); in policy_section()
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/dports/www/obhttpd/libressl-3.4.1/crypto/x509/ |
H A D | x509_cpols.c | 476 POLICYQUALINFO *nqual = NULL; in policy_section() local 492 if ((nqual = POLICYQUALINFO_new()) == NULL) in policy_section() 494 nqual->pqualid = OBJ_nid2obj(NID_id_qt_cps); in policy_section() 495 nqual->d.cpsuri = ASN1_IA5STRING_new(); in policy_section() 496 if (nqual->d.cpsuri == NULL) in policy_section() 498 if (ASN1_STRING_set(nqual->d.cpsuri, cnf->value, in policy_section() 507 if (sk_POLICYQUALINFO_push(pol->qualifiers, nqual) == 0) in policy_section() 509 nqual = NULL; in policy_section() 554 POLICYQUALINFO_free(nqual); in policy_section()
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/dports/biology/bowtie/bowtie-1.3.1/ |
H A D | pat.cpp | 497 int nqual = 0; in parse() local 504 if(++nqual > this->trim5_) { in parse() 510 if(nchar > nqual) { in parse() 513 } else if(nqual > nchar) { in parse() 917 int nqual = 0; in parse() local 930 if(++nqual > this->trim5_) { in parse() 937 if(nqual++ >= r.trimmed5) { in parse() 950 if(nqual++ >= r.trimmed5) { in parse() 1080 int nqual = 0; in parse() local 1110 if(nchar > nqual) { in parse() [all …]
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/dports/biology/bowtie2/bowtie2-2.4.4/ |
H A D | read_qseq.cpp | 173 int nqual = 0; in parse() local 185 if(++nqual > pp_.trim5) { in parse() 201 if(++nqual > r.trimmed5) { in parse()
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H A D | pat.cpp | 705 int nqual = 0; in parse() local 712 if(++nqual > pp_.trim5) { in parse() 718 if(nchar > nqual) { in parse() 721 } else if(nqual > nchar) { in parse() 1138 int nqual = 0; in parse() local 1603 int nqual = 0; in parse() local 1633 if(nchar > nqual) { in parse() 1636 } else if(nqual > nchar) { in parse() 1871 int nqual = 0; in parse() local 1901 if(nchar > nqual) { in parse() [all …]
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/dports/net/openmpi3/openmpi-3.1.6/opal/mca/pmix/pmix2x/pmix/src/mca/bfrops/base/ |
H A D | bfrop_base_copy.c | 766 if (NULL != sq[n].qualifiers && 0 < sq[n].nqual) { in pmix_bfrops_base_copy_darray() 767 PMIX_INFO_CREATE(pq[n].qualifiers, sq[n].nqual); in pmix_bfrops_base_copy_darray() 769 PMIX_INFO_FREE(pq[n].qualifiers, sq[n].nqual); in pmix_bfrops_base_copy_darray() 773 for (m=0; m < sq[n].nqual; m++) { in pmix_bfrops_base_copy_darray() 776 pq[n].nqual = sq[n].nqual; in pmix_bfrops_base_copy_darray() 779 pq[n].nqual = 0; in pmix_bfrops_base_copy_darray() 802 (*dest)->nqual = src->nqual; in pmix_bfrops_base_copy_query()
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/dports/net/openmpi/openmpi-4.1.1/opal/mca/pmix/pmix3x/pmix/src/mca/bfrops/base/ |
H A D | bfrop_base_copy.c | 806 if (NULL != sq[n].qualifiers && 0 < sq[n].nqual) { in pmix_bfrops_base_copy_darray() 807 PMIX_INFO_CREATE(pq[n].qualifiers, sq[n].nqual); in pmix_bfrops_base_copy_darray() 809 PMIX_INFO_FREE(pq[n].qualifiers, sq[n].nqual); in pmix_bfrops_base_copy_darray() 813 for (m=0; m < sq[n].nqual; m++) { in pmix_bfrops_base_copy_darray() 816 pq[n].nqual = sq[n].nqual; in pmix_bfrops_base_copy_darray() 819 pq[n].nqual = 0; in pmix_bfrops_base_copy_darray() 863 (*dest)->nqual = src->nqual; in pmix_bfrops_base_copy_query()
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/dports/comms/wsjtz/wsjtx/map65/libm65/ |
H A D | map65a.f90 | 306 nqual=sig(k,10) 338 cm,decoded,nkv,nqual,ntxpol,cp 343 cm,decoded,nkv,nqual,30*iloop 345 dt,sync2,nkv,nqual,cm,decoded 458 nqual=min(sig(i,10),10.0)
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/dports/net/openmpi/openmpi-4.1.1/opal/mca/pmix/pmix3x/pmix/src/mca/bfrops/v20/ |
H A D | copy.c | 845 if (NULL != sq[n].qualifiers && 0 < sq[n].nqual) { in pmix20_bfrop_value_xfer() 851 for (m=0; m < sq[n].nqual; m++) { in pmix20_bfrop_value_xfer() 854 pq[n].nqual = sq[n].nqual; in pmix20_bfrop_value_xfer() 857 pq[n].nqual = 0; in pmix20_bfrop_value_xfer() 1463 if (NULL != sq[n].qualifiers && 0 < sq[n].nqual) { in pmix20_bfrop_copy_darray() 1464 PMIX_INFO_CREATE(pq[n].qualifiers, sq[n].nqual); in pmix20_bfrop_copy_darray() 1466 PMIX_INFO_FREE(pq[n].qualifiers, sq[n].nqual); in pmix20_bfrop_copy_darray() 1470 for (m=0; m < sq[n].nqual; m++) { in pmix20_bfrop_copy_darray() 1473 pq[n].nqual = sq[n].nqual; in pmix20_bfrop_copy_darray() 1476 pq[n].nqual = 0; in pmix20_bfrop_copy_darray() [all …]
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/dports/net/openmpi3/openmpi-3.1.6/opal/mca/pmix/pmix2x/pmix/src/mca/bfrops/v20/ |
H A D | copy.c | 845 if (NULL != sq[n].qualifiers && 0 < sq[n].nqual) { in pmix20_bfrop_value_xfer() 851 for (m=0; m < sq[n].nqual; m++) { in pmix20_bfrop_value_xfer() 854 pq[n].nqual = sq[n].nqual; in pmix20_bfrop_value_xfer() 857 pq[n].nqual = 0; in pmix20_bfrop_value_xfer() 1463 if (NULL != sq[n].qualifiers && 0 < sq[n].nqual) { in pmix20_bfrop_copy_darray() 1464 PMIX_INFO_CREATE(pq[n].qualifiers, sq[n].nqual); in pmix20_bfrop_copy_darray() 1466 PMIX_INFO_FREE(pq[n].qualifiers, sq[n].nqual); in pmix20_bfrop_copy_darray() 1470 for (m=0; m < sq[n].nqual; m++) { in pmix20_bfrop_copy_darray() 1473 pq[n].nqual = sq[n].nqual; in pmix20_bfrop_copy_darray() 1476 pq[n].nqual = 0; in pmix20_bfrop_copy_darray() [all …]
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/dports/net/openmpi/openmpi-4.1.1/opal/mca/pmix/pmix3x/pmix/src/common/ |
H A D | pmix_query.c | 219 for (p=0; p < queries[n].nqual; p++) { in localquery() 348 if (NULL != queries[n].qualifiers && 0 == queries[n].nqual) { in PMIx_Query_info_nb() 358 queries[n].nqual = p; in PMIx_Query_info_nb() 370 for (p=0; p < queries[n].nqual; p++) { in PMIx_Query_info_nb()
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