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Searched refs:nqual (Results 1 – 25 of 75) sorted by relevance

123

/dports/science/gromacs/gromacs-2021.4/src/gromacs/gmxpreprocess/
H A Dnm2type.cpp207 int nresolved, nb, maxbond, nqual[2][ematchNR]; in nm2type() local
263 nqual[prev][k] = 0; in nm2type()
276 nqual[cur][j] = 0; in nm2type()
305 nqual[cur][j]++; in nm2type()
310 … if ((nqual[cur][ematchExact] + nqual[cur][ematchElem] + nqual[cur][ematchWild]) == nb) in nm2type()
312 if ((nqual[cur][ematchExact] > nqual[prev][ematchExact]) || in nm2type()
314 ((nqual[cur][ematchExact] == nqual[prev][ematchExact]) in nm2type()
315 && (nqual[cur][ematchElem] > nqual[prev][ematchElem])) in nm2type()
318 ((nqual[cur][ematchExact] == nqual[prev][ematchExact]) in nm2type()
319 && (nqual[cur][ematchElem] == nqual[prev][ematchElem]) in nm2type()
[all …]
/dports/comms/wsjtz/wsjtx/lib/
H A Davecho.f9083 nqual=0
84 if(nsum.ge.2 .and. nsum.lt.4) nqual=(snr-4)/5
85 if(nsum.ge.4 .and. nsum.lt.8) nqual=(snr-3)/4
86 if(nsum.ge.8 .and. nsum.lt.12) nqual=(snr-3)/3
87 if(nsum.ge.12) nqual=(snr-2.5)/2.5
88 if(nqual.lt.0) nqual=0
89 if(nqual.gt.10) nqual=10
/dports/biology/bcftools/bcftools-1.14/
H A Dbam2bcf.c63 bca->nqual = 60; in bcf_call_init()
88 bca->nqual = 0; in bcf_call_destroy()
150 memset(bca->ref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
151 memset(bca->alt_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
152 memset(bca->iref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
153 memset(bca->ialt_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
154 memset(bca->ref_bq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
155 memset(bca->alt_bq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
156 memset(bca->fwd_mqs,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
157 memset(bca->rev_mqs,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
[all …]
/dports/biology/bio-mocha/bcftools-1.14/
H A Dbam2bcf.c63 bca->nqual = 60; in bcf_call_init()
88 bca->nqual = 0; in bcf_call_destroy()
150 memset(bca->ref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
151 memset(bca->alt_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
152 memset(bca->iref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
153 memset(bca->ialt_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
154 memset(bca->ref_bq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
155 memset(bca->alt_bq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
156 memset(bca->fwd_mqs,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
157 memset(bca->rev_mqs,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
[all …]
/dports/biology/py-pysam/pysam-0.18.0/bcftools/
H A Dbam2bcf.c63 bca->nqual = 60; in bcf_call_init()
88 bca->nqual = 0; in bcf_call_destroy()
150 memset(bca->ref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
151 memset(bca->alt_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
152 memset(bca->iref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
153 memset(bca->ialt_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
154 memset(bca->ref_bq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
155 memset(bca->alt_bq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
156 memset(bca->fwd_mqs,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
157 memset(bca->rev_mqs,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
[all …]
H A Dbam2bcf.c.pysam.c65 bca->nqual = 60; in bcf_call_init()
90 bca->nqual = 0; in bcf_call_destroy()
152 memset(bca->ref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
153 memset(bca->alt_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
154 memset(bca->iref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
155 memset(bca->ialt_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
156 memset(bca->ref_bq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
157 memset(bca->alt_bq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
158 memset(bca->fwd_mqs,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
159 memset(bca->rev_mqs,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
[all …]
/dports/biology/py-pysam/pysam-0.18.0/samtools/
H A Dbam2bcf.c60 bca->nqual = 60; in bcf_call_init()
61 bca->ref_mq = malloc(bca->nqual*sizeof(int)); in bcf_call_init()
62 bca->alt_mq = malloc(bca->nqual*sizeof(int)); in bcf_call_init()
63 bca->ref_bq = malloc(bca->nqual*sizeof(int)); in bcf_call_init()
64 bca->alt_bq = malloc(bca->nqual*sizeof(int)); in bcf_call_init()
65 bca->fwd_mqs = malloc(bca->nqual*sizeof(int)); in bcf_call_init()
66 bca->rev_mqs = malloc(bca->nqual*sizeof(int)); in bcf_call_init()
77 bca->nqual = 0; in bcf_call_destroy()
122 memset(bca->ref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
223 int ibq = baseQ/60. * bca->nqual; in bcf_call_glfgen()
[all …]
H A Dbam2bcf.c.pysam.c62 bca->nqual = 60; in bcf_call_init()
63 bca->ref_mq = malloc(bca->nqual*sizeof(int)); in bcf_call_init()
64 bca->alt_mq = malloc(bca->nqual*sizeof(int)); in bcf_call_init()
65 bca->ref_bq = malloc(bca->nqual*sizeof(int)); in bcf_call_init()
66 bca->alt_bq = malloc(bca->nqual*sizeof(int)); in bcf_call_init()
67 bca->fwd_mqs = malloc(bca->nqual*sizeof(int)); in bcf_call_init()
68 bca->rev_mqs = malloc(bca->nqual*sizeof(int)); in bcf_call_init()
79 bca->nqual = 0; in bcf_call_destroy()
124 memset(bca->ref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
225 int ibq = baseQ/60. * bca->nqual; in bcf_call_glfgen()
[all …]
/dports/biology/samtools/samtools-1.14/
H A Dbam2bcf.c60 bca->nqual = 60; in bcf_call_init()
61 bca->ref_mq = malloc(bca->nqual*sizeof(int)); in bcf_call_init()
62 bca->alt_mq = malloc(bca->nqual*sizeof(int)); in bcf_call_init()
63 bca->ref_bq = malloc(bca->nqual*sizeof(int)); in bcf_call_init()
64 bca->alt_bq = malloc(bca->nqual*sizeof(int)); in bcf_call_init()
65 bca->fwd_mqs = malloc(bca->nqual*sizeof(int)); in bcf_call_init()
66 bca->rev_mqs = malloc(bca->nqual*sizeof(int)); in bcf_call_init()
77 bca->nqual = 0; in bcf_call_destroy()
122 memset(bca->ref_mq,0,sizeof(int)*bca->nqual); in bcf_callaux_clean()
223 int ibq = baseQ/60. * bca->nqual; in bcf_call_glfgen()
[all …]
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/
H A Dmismatch-restore-qual.c51 unsigned const nqual = ( unsigned const )argv[ 0 ].u.data.elem_count; in mismatch_restore_qual_impl() local
71 assert( j == nqual ); in mismatch_restore_qual_impl()
97 unsigned const nqual = ( unsigned const )argv[ 0 ].u.data.elem_count; in decompress_quality_impl() local
117 assert( j == nqual ); in decompress_quality_impl()
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/axf/
H A Dmismatch-restore-qual.c51 unsigned const nqual = ( unsigned const )argv[ 0 ].u.data.elem_count; in mismatch_restore_qual_impl() local
71 assert( j == nqual ); in mismatch_restore_qual_impl()
97 unsigned const nqual = ( unsigned const )argv[ 0 ].u.data.elem_count; in decompress_quality_impl() local
117 assert( j == nqual ); in decompress_quality_impl()
/dports/security/libressl-static/libressl-3.3.5/crypto/x509/
H A Dx509_cpols.c476 POLICYQUALINFO *nqual = NULL; in policy_section() local
492 if ((nqual = POLICYQUALINFO_new()) == NULL) in policy_section()
494 nqual->pqualid = OBJ_nid2obj(NID_id_qt_cps); in policy_section()
495 nqual->d.cpsuri = ASN1_IA5STRING_new(); in policy_section()
496 if (nqual->d.cpsuri == NULL) in policy_section()
498 if (ASN1_STRING_set(nqual->d.cpsuri, cnf->value, in policy_section()
507 if (sk_POLICYQUALINFO_push(pol->qualifiers, nqual) == 0) in policy_section()
509 nqual = NULL; in policy_section()
554 POLICYQUALINFO_free(nqual); in policy_section()
/dports/security/libressl/libressl-3.4.3/crypto/x509/
H A Dx509_cpols.c476 POLICYQUALINFO *nqual = NULL; in policy_section() local
492 if ((nqual = POLICYQUALINFO_new()) == NULL) in policy_section()
494 nqual->pqualid = OBJ_nid2obj(NID_id_qt_cps); in policy_section()
495 nqual->d.cpsuri = ASN1_IA5STRING_new(); in policy_section()
496 if (nqual->d.cpsuri == NULL) in policy_section()
498 if (ASN1_STRING_set(nqual->d.cpsuri, cnf->value, in policy_section()
507 if (sk_POLICYQUALINFO_push(pol->qualifiers, nqual) == 0) in policy_section()
509 nqual = NULL; in policy_section()
554 POLICYQUALINFO_free(nqual); in policy_section()
/dports/emulators/citra/citra-ac98458e0/externals/libressl/crypto/x509/
H A Dx509_cpols.c476 POLICYQUALINFO *nqual = NULL; in policy_section() local
492 if ((nqual = POLICYQUALINFO_new()) == NULL) in policy_section()
494 nqual->pqualid = OBJ_nid2obj(NID_id_qt_cps); in policy_section()
495 nqual->d.cpsuri = ASN1_IA5STRING_new(); in policy_section()
496 if (nqual->d.cpsuri == NULL) in policy_section()
498 if (ASN1_STRING_set(nqual->d.cpsuri, cnf->value, in policy_section()
507 if (sk_POLICYQUALINFO_push(pol->qualifiers, nqual) == 0) in policy_section()
509 nqual = NULL; in policy_section()
554 POLICYQUALINFO_free(nqual); in policy_section()
/dports/emulators/citra-qt5/citra-ac98458e0/externals/libressl/crypto/x509/
H A Dx509_cpols.c476 POLICYQUALINFO *nqual = NULL; in policy_section() local
492 if ((nqual = POLICYQUALINFO_new()) == NULL) in policy_section()
494 nqual->pqualid = OBJ_nid2obj(NID_id_qt_cps); in policy_section()
495 nqual->d.cpsuri = ASN1_IA5STRING_new(); in policy_section()
496 if (nqual->d.cpsuri == NULL) in policy_section()
498 if (ASN1_STRING_set(nqual->d.cpsuri, cnf->value, in policy_section()
507 if (sk_POLICYQUALINFO_push(pol->qualifiers, nqual) == 0) in policy_section()
509 nqual = NULL; in policy_section()
554 POLICYQUALINFO_free(nqual); in policy_section()
/dports/www/obhttpd/libressl-3.4.1/crypto/x509/
H A Dx509_cpols.c476 POLICYQUALINFO *nqual = NULL; in policy_section() local
492 if ((nqual = POLICYQUALINFO_new()) == NULL) in policy_section()
494 nqual->pqualid = OBJ_nid2obj(NID_id_qt_cps); in policy_section()
495 nqual->d.cpsuri = ASN1_IA5STRING_new(); in policy_section()
496 if (nqual->d.cpsuri == NULL) in policy_section()
498 if (ASN1_STRING_set(nqual->d.cpsuri, cnf->value, in policy_section()
507 if (sk_POLICYQUALINFO_push(pol->qualifiers, nqual) == 0) in policy_section()
509 nqual = NULL; in policy_section()
554 POLICYQUALINFO_free(nqual); in policy_section()
/dports/biology/bowtie/bowtie-1.3.1/
H A Dpat.cpp497 int nqual = 0; in parse() local
504 if(++nqual > this->trim5_) { in parse()
510 if(nchar > nqual) { in parse()
513 } else if(nqual > nchar) { in parse()
917 int nqual = 0; in parse() local
930 if(++nqual > this->trim5_) { in parse()
937 if(nqual++ >= r.trimmed5) { in parse()
950 if(nqual++ >= r.trimmed5) { in parse()
1080 int nqual = 0; in parse() local
1110 if(nchar > nqual) { in parse()
[all …]
/dports/biology/bowtie2/bowtie2-2.4.4/
H A Dread_qseq.cpp173 int nqual = 0; in parse() local
185 if(++nqual > pp_.trim5) { in parse()
201 if(++nqual > r.trimmed5) { in parse()
H A Dpat.cpp705 int nqual = 0; in parse() local
712 if(++nqual > pp_.trim5) { in parse()
718 if(nchar > nqual) { in parse()
721 } else if(nqual > nchar) { in parse()
1138 int nqual = 0; in parse() local
1603 int nqual = 0; in parse() local
1633 if(nchar > nqual) { in parse()
1636 } else if(nqual > nchar) { in parse()
1871 int nqual = 0; in parse() local
1901 if(nchar > nqual) { in parse()
[all …]
/dports/net/openmpi3/openmpi-3.1.6/opal/mca/pmix/pmix2x/pmix/src/mca/bfrops/base/
H A Dbfrop_base_copy.c766 if (NULL != sq[n].qualifiers && 0 < sq[n].nqual) { in pmix_bfrops_base_copy_darray()
767 PMIX_INFO_CREATE(pq[n].qualifiers, sq[n].nqual); in pmix_bfrops_base_copy_darray()
769 PMIX_INFO_FREE(pq[n].qualifiers, sq[n].nqual); in pmix_bfrops_base_copy_darray()
773 for (m=0; m < sq[n].nqual; m++) { in pmix_bfrops_base_copy_darray()
776 pq[n].nqual = sq[n].nqual; in pmix_bfrops_base_copy_darray()
779 pq[n].nqual = 0; in pmix_bfrops_base_copy_darray()
802 (*dest)->nqual = src->nqual; in pmix_bfrops_base_copy_query()
/dports/net/openmpi/openmpi-4.1.1/opal/mca/pmix/pmix3x/pmix/src/mca/bfrops/base/
H A Dbfrop_base_copy.c806 if (NULL != sq[n].qualifiers && 0 < sq[n].nqual) { in pmix_bfrops_base_copy_darray()
807 PMIX_INFO_CREATE(pq[n].qualifiers, sq[n].nqual); in pmix_bfrops_base_copy_darray()
809 PMIX_INFO_FREE(pq[n].qualifiers, sq[n].nqual); in pmix_bfrops_base_copy_darray()
813 for (m=0; m < sq[n].nqual; m++) { in pmix_bfrops_base_copy_darray()
816 pq[n].nqual = sq[n].nqual; in pmix_bfrops_base_copy_darray()
819 pq[n].nqual = 0; in pmix_bfrops_base_copy_darray()
863 (*dest)->nqual = src->nqual; in pmix_bfrops_base_copy_query()
/dports/comms/wsjtz/wsjtx/map65/libm65/
H A Dmap65a.f90306 nqual=sig(k,10)
338 cm,decoded,nkv,nqual,ntxpol,cp
343 cm,decoded,nkv,nqual,30*iloop
345 dt,sync2,nkv,nqual,cm,decoded
458 nqual=min(sig(i,10),10.0)
/dports/net/openmpi/openmpi-4.1.1/opal/mca/pmix/pmix3x/pmix/src/mca/bfrops/v20/
H A Dcopy.c845 if (NULL != sq[n].qualifiers && 0 < sq[n].nqual) { in pmix20_bfrop_value_xfer()
851 for (m=0; m < sq[n].nqual; m++) { in pmix20_bfrop_value_xfer()
854 pq[n].nqual = sq[n].nqual; in pmix20_bfrop_value_xfer()
857 pq[n].nqual = 0; in pmix20_bfrop_value_xfer()
1463 if (NULL != sq[n].qualifiers && 0 < sq[n].nqual) { in pmix20_bfrop_copy_darray()
1464 PMIX_INFO_CREATE(pq[n].qualifiers, sq[n].nqual); in pmix20_bfrop_copy_darray()
1466 PMIX_INFO_FREE(pq[n].qualifiers, sq[n].nqual); in pmix20_bfrop_copy_darray()
1470 for (m=0; m < sq[n].nqual; m++) { in pmix20_bfrop_copy_darray()
1473 pq[n].nqual = sq[n].nqual; in pmix20_bfrop_copy_darray()
1476 pq[n].nqual = 0; in pmix20_bfrop_copy_darray()
[all …]
/dports/net/openmpi3/openmpi-3.1.6/opal/mca/pmix/pmix2x/pmix/src/mca/bfrops/v20/
H A Dcopy.c845 if (NULL != sq[n].qualifiers && 0 < sq[n].nqual) { in pmix20_bfrop_value_xfer()
851 for (m=0; m < sq[n].nqual; m++) { in pmix20_bfrop_value_xfer()
854 pq[n].nqual = sq[n].nqual; in pmix20_bfrop_value_xfer()
857 pq[n].nqual = 0; in pmix20_bfrop_value_xfer()
1463 if (NULL != sq[n].qualifiers && 0 < sq[n].nqual) { in pmix20_bfrop_copy_darray()
1464 PMIX_INFO_CREATE(pq[n].qualifiers, sq[n].nqual); in pmix20_bfrop_copy_darray()
1466 PMIX_INFO_FREE(pq[n].qualifiers, sq[n].nqual); in pmix20_bfrop_copy_darray()
1470 for (m=0; m < sq[n].nqual; m++) { in pmix20_bfrop_copy_darray()
1473 pq[n].nqual = sq[n].nqual; in pmix20_bfrop_copy_darray()
1476 pq[n].nqual = 0; in pmix20_bfrop_copy_darray()
[all …]
/dports/net/openmpi/openmpi-4.1.1/opal/mca/pmix/pmix3x/pmix/src/common/
H A Dpmix_query.c219 for (p=0; p < queries[n].nqual; p++) { in localquery()
348 if (NULL != queries[n].qualifiers && 0 == queries[n].nqual) { in PMIx_Query_info_nb()
358 queries[n].nqual = p; in PMIx_Query_info_nb()
370 for (p=0; p < queries[n].nqual; p++) { in PMIx_Query_info_nb()

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