Searched refs:numCompressedChars (Results 1 – 6 of 6) sorted by relevance
4207 for (i=0; i<numCompressedChars; i++) in FillNumSitesOfPat()4211 numSitesOfPat[j * numCompressedChars + i] = numSitesOfPat[i]; in FillNumSitesOfPat()4231 for (i=0; i<numCompressedChars; i++) in FillNumSitesOfPat()4232 n += (int)numSitesOfPat[0 * numCompressedChars + i]; in FillNumSitesOfPat()4248 decreased = increased + numCompressedChars; in FillNumSitesOfPat()4253 for (i=0; i<numCompressedChars; i++) in FillNumSitesOfPat()4274 if (numSitesOfPat[j * numCompressedChars + whichToChange] < 0) in FillNumSitesOfPat()4299 if (numSitesOfPat[j * numCompressedChars + whichToChange] < 0) in FillNumSitesOfPat()4314 for (i=0; i<numCompressedChars; i++) in FillNumSitesOfPat()12486 for (i=0; i<numCompressedChars; i++) in PrintStates()[all …]
6758 nSitesOfPat = (CLFlt *) SafeCalloc (numCompressedChars, sizeof(CLFlt));6766 for (i=0; i<numCompressedChars; i++)9716 nSitesOfPat = (CLFlt *) SafeCalloc (numCompressedChars, sizeof(CLFlt)); in Move_ParsFossilSPRClock()9722 for (i=0; i<numCompressedChars; i++) in Move_ParsFossilSPRClock()10226 nSitesOfPat = (CLFlt *) SafeCalloc (numCompressedChars, sizeof(CLFlt)); in Move_ParsSPR()10232 for (i=0; i<numCompressedChars; i++) in Move_ParsSPR()10745 for (i=0; i<numCompressedChars; i++) in Move_ParsSPR1()11410 for (i=0; i<numCompressedChars; i++) in Move_ParsSPR2()12098 for (i=0; i<numCompressedChars; i++) in Move_ParsSPRClock()12618 for (i=0; i<numCompressedChars; i++) in Move_ParsTBR1()[all …]
5777 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_Gen()5986 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_Gen_SSE()6142 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_Gen_GibbsGamma()6269 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_NUC4()6383 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_NUC4_GibbsGamma()6653 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_NUC4_FMA()6817 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_NUC4_AVX()6989 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_NUC4_SSE()7139 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_NY98()7214 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in Likelihood_NY98_SSE()[all …]
1657 extern int numCompressedChars; /* number of compressed characters …
1220 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in TreeLikelihood_Beagle()2902 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in TreeLikelihood_BeagleMultiPartition()
242 numCompressedChars += numDummyChars; in AddDummyChars()246 tempSitesOfPat = (CLFlt *) SafeCalloc (numCompressedChars, sizeof(CLFlt)); in AddDummyChars()425 numCompressedChars -= numDeleted; in AddDummyChars()2410 numCompressedChars = 0; in CompressData()2423 m->compCharStart = numCompressedChars; in CompressData()2530 tempSitesOfPat[numCompressedChars] = 1; in CompressData()2534 compCharPos[col[k]] = numCompressedChars; in CompressData()2539 numCompressedChars++; in CompressData()2594 numSitesOfPat = (CLFlt *) SafeCalloc (numCompressedChars, sizeof(CLFlt)); in CompressData()2611 …MrBayesPrint ("%s Problem allocating origChar (%d)\n", spacer, numCompressedChars * sizeof(int)); in CompressData()[all …]