Searched refs:numGammaCats (Results 1 – 6 of 6) sorted by relevance
/dports/biology/mrbayes/MrBayes-3.2.7/src/ |
H A D | mbbeagle.h | 20 int createBeagleInstance(ModelInfo *m, int nCijkParts, int numGammaCats, int numModelStates, int…
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H A D | bayes.c | 677 …defaultModel.numGammaCats = 4; /* number of categories for gamma approximatio… in InitializeMrBayes()
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H A D | bayes.h | 988 int numGammaCats; /* number of categories for gamma approximation */ member
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H A D | model.c | 3206 modelParams[i].numGammaCats = tempInt; in DoLsetParm() 3208 … MrBayesPrint ("%s Setting Ngammacat to %d\n", spacer, modelParams[i].numGammaCats); in DoLsetParm() 3210 …rint ("%s Setting Ngammacat to %d for partition %d\n", spacer, modelParams[i].numGammaCats, i+1); in DoLsetParm() 11219 if (DiscreteLogNormal (subValue, value[0], mp->numGammaCats, 1) == ERROR) in FillNormalParams() 11224 if (DiscreteGamma (subValue, value[0], value[0], mp->numGammaCats, 0) == ERROR) in FillNormalParams() 11247 AutodGamma (subValue, value[0], mp->numGammaCats); in FillNormalParams() 13758 else if (modelParams[part1].numGammaCats != modelParams[part2].numGammaCats) in IsModelSame() 17979 m->numRateCats = mp->numGammaCats; in SetModelInfo() 18912 p->nSubValues = mp->numGammaCats; in SetModelParams() 18977 p->nSubValues = mp->numGammaCats * mp->numGammaCats; in SetModelParams() [all …]
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H A D | proposal.c | 376 AutodGamma (markovTiValues, newP, mp->numGammaCats); in Move_Adgamma() 14034 if (DiscreteLogNormal (rates, newA, mp->numGammaCats, 1) == ERROR) in Move_RateShape_M() 14039 if (DiscreteGamma (rates, newA, newA, mp->numGammaCats, 0) == ERROR) in Move_RateShape_M()
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H A D | command.c | 10581 …ammacat <number> %d \n", mp->numGammaCats); in GetUserHelp()
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