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Searched refs:numGammaCats (Results 1 – 6 of 6) sorted by relevance

/dports/biology/mrbayes/MrBayes-3.2.7/src/
H A Dmbbeagle.h20 int createBeagleInstance(ModelInfo *m, int nCijkParts, int numGammaCats, int numModelStates, int…
H A Dbayes.c677 …defaultModel.numGammaCats = 4; /* number of categories for gamma approximatio… in InitializeMrBayes()
H A Dbayes.h988 int numGammaCats; /* number of categories for gamma approximation */ member
H A Dmodel.c3206 modelParams[i].numGammaCats = tempInt; in DoLsetParm()
3208 … MrBayesPrint ("%s Setting Ngammacat to %d\n", spacer, modelParams[i].numGammaCats); in DoLsetParm()
3210 …rint ("%s Setting Ngammacat to %d for partition %d\n", spacer, modelParams[i].numGammaCats, i+1); in DoLsetParm()
11219 if (DiscreteLogNormal (subValue, value[0], mp->numGammaCats, 1) == ERROR) in FillNormalParams()
11224 if (DiscreteGamma (subValue, value[0], value[0], mp->numGammaCats, 0) == ERROR) in FillNormalParams()
11247 AutodGamma (subValue, value[0], mp->numGammaCats); in FillNormalParams()
13758 else if (modelParams[part1].numGammaCats != modelParams[part2].numGammaCats) in IsModelSame()
17979 m->numRateCats = mp->numGammaCats; in SetModelInfo()
18912 p->nSubValues = mp->numGammaCats; in SetModelParams()
18977 p->nSubValues = mp->numGammaCats * mp->numGammaCats; in SetModelParams()
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H A Dproposal.c376 AutodGamma (markovTiValues, newP, mp->numGammaCats); in Move_Adgamma()
14034 if (DiscreteLogNormal (rates, newA, mp->numGammaCats, 1) == ERROR) in Move_RateShape_M()
14039 if (DiscreteGamma (rates, newA, newA, mp->numGammaCats, 0) == ERROR) in Move_RateShape_M()
H A Dcommand.c10581 …ammacat <number> %d \n", mp->numGammaCats); in GetUserHelp()