Searched refs:numM10GammaCats (Results 1 – 5 of 5) sorted by relevance
/dports/biology/mrbayes/MrBayes-3.2.7/src/ |
H A D | model.c | 3380 modelParams[i].numM10GammaCats = tempInt; in DoLsetParm() 11031 …ble (&subValue[mp->numM10BetaCats + mp->numM10GammaCats + 2], &subValue[mp->numM10BetaCats + mp->n… in FillNormalParams() 11044 … subValue[i] = subValue[mp->numM10BetaCats + mp->numM10GammaCats + 1] / mp->numM10GammaCats; in FillNormalParams() 11070 …reaks (subValue[mp->numM10BetaCats + mp->numM10GammaCats + 4], subValue[mp->numM10BetaCats + mp->n… in FillNormalParams() 11072 … subValue[mp->numM10BetaCats + mp->numM10GammaCats + 7], mp->numM10GammaCats, 0) == ERROR) in FillNormalParams() 11074 for (i=0; i<mp->numM10GammaCats; i++) in FillNormalParams() 18001 m->numOmegaCats = mp->numM10BetaCats + mp->numM10GammaCats; in SetModelInfo() 18517 p->nValues = mp->numM10BetaCats + mp->numM10GammaCats; in SetModelParams() 18518 p->nSubValues = mp->numM10BetaCats + mp->numM10GammaCats + 8; in SetModelParams() 24196 value += (mp->numM10BetaCats + mp->numM10GammaCats); in ShowParameters() [all …]
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H A D | bayes.c | 731 defaultModel.numM10GammaCats = 4; in InitializeMrBayes()
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H A D | bayes.h | 995 int numM10GammaCats; /* number of cats for gamma approx (M10 model) */ member
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H A D | proposal.c | 8590 oldVal = subVals[mp->numM10BetaCats + mp->numM10GammaCats + 4 + whichParam]; in Move_OmegaBeta_M() 8619 subVals[mp->numM10BetaCats + mp->numM10GammaCats + 4 + whichParam] = newVal; in Move_OmegaBeta_M() 8622 …Breaks (subVals[mp->numM10BetaCats + mp->numM10GammaCats + 4], subVals[mp->numM10BetaCats + mp->nu… in Move_OmegaBeta_M() 8672 oldVal = subVals[mp->numM10BetaCats + mp->numM10GammaCats + 6 + whichParam]; in Move_OmegaGamma_M() 8711 subVals[mp->numM10BetaCats + mp->numM10GammaCats + 6 + whichParam] = newVal; in Move_OmegaGamma_M() 8714 …if (DiscreteGamma (&vals[mp->numM10BetaCats], subVals[mp->numM10BetaCats + mp->numM10GammaCats + 6… in Move_OmegaGamma_M() 8715 … subVals[mp->numM10BetaCats + mp->numM10GammaCats + 7], mp->numM10GammaCats, 0) == ERROR) in Move_OmegaGamma_M() 8717 for (i=0; i<mp->numM10GammaCats; i++) in Move_OmegaGamma_M() 8751 numBetaAndGammaCats = mp->numM10BetaCats + mp->numM10GammaCats; in Move_OmegaCat() 8795 for (i=mp->numM10BetaCats; i<mp->numM10BetaCats+mp->numM10GammaCats; i++) in Move_OmegaCat() [all …]
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H A D | mcmc.c | 13004 …&tempStr, &tempStrSize, "\t%s", MbPrintNum(sst[mp->numM10BetaCats + mp->numM10GammaCats + 4 + j])); in PrintStates() 13009 …tf (&tempStr, &tempStrSize, "\t%s", MbPrintNum(sst[mp->numM10BetaCats + mp->numM10GammaCats + j])); in PrintStates()
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