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Searched refs:numM10GammaCats (Results 1 – 5 of 5) sorted by relevance

/dports/biology/mrbayes/MrBayes-3.2.7/src/
H A Dmodel.c3380 modelParams[i].numM10GammaCats = tempInt; in DoLsetParm()
11031 …ble (&subValue[mp->numM10BetaCats + mp->numM10GammaCats + 2], &subValue[mp->numM10BetaCats + mp->n… in FillNormalParams()
11044 … subValue[i] = subValue[mp->numM10BetaCats + mp->numM10GammaCats + 1] / mp->numM10GammaCats; in FillNormalParams()
11070 …reaks (subValue[mp->numM10BetaCats + mp->numM10GammaCats + 4], subValue[mp->numM10BetaCats + mp->n… in FillNormalParams()
11072 … subValue[mp->numM10BetaCats + mp->numM10GammaCats + 7], mp->numM10GammaCats, 0) == ERROR) in FillNormalParams()
11074 for (i=0; i<mp->numM10GammaCats; i++) in FillNormalParams()
18001 m->numOmegaCats = mp->numM10BetaCats + mp->numM10GammaCats; in SetModelInfo()
18517 p->nValues = mp->numM10BetaCats + mp->numM10GammaCats; in SetModelParams()
18518 p->nSubValues = mp->numM10BetaCats + mp->numM10GammaCats + 8; in SetModelParams()
24196 value += (mp->numM10BetaCats + mp->numM10GammaCats); in ShowParameters()
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H A Dbayes.c731 defaultModel.numM10GammaCats = 4; in InitializeMrBayes()
H A Dbayes.h995 int numM10GammaCats; /* number of cats for gamma approx (M10 model) */ member
H A Dproposal.c8590 oldVal = subVals[mp->numM10BetaCats + mp->numM10GammaCats + 4 + whichParam]; in Move_OmegaBeta_M()
8619 subVals[mp->numM10BetaCats + mp->numM10GammaCats + 4 + whichParam] = newVal; in Move_OmegaBeta_M()
8622 …Breaks (subVals[mp->numM10BetaCats + mp->numM10GammaCats + 4], subVals[mp->numM10BetaCats + mp->nu… in Move_OmegaBeta_M()
8672 oldVal = subVals[mp->numM10BetaCats + mp->numM10GammaCats + 6 + whichParam]; in Move_OmegaGamma_M()
8711 subVals[mp->numM10BetaCats + mp->numM10GammaCats + 6 + whichParam] = newVal; in Move_OmegaGamma_M()
8714 …if (DiscreteGamma (&vals[mp->numM10BetaCats], subVals[mp->numM10BetaCats + mp->numM10GammaCats + 6… in Move_OmegaGamma_M()
8715 … subVals[mp->numM10BetaCats + mp->numM10GammaCats + 7], mp->numM10GammaCats, 0) == ERROR) in Move_OmegaGamma_M()
8717 for (i=0; i<mp->numM10GammaCats; i++) in Move_OmegaGamma_M()
8751 numBetaAndGammaCats = mp->numM10BetaCats + mp->numM10GammaCats; in Move_OmegaCat()
8795 for (i=mp->numM10BetaCats; i<mp->numM10BetaCats+mp->numM10GammaCats; i++) in Move_OmegaCat()
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H A Dmcmc.c13004 …&tempStr, &tempStrSize, "\t%s", MbPrintNum(sst[mp->numM10BetaCats + mp->numM10GammaCats + 4 + j])); in PrintStates()
13009 …tf (&tempStr, &tempStrSize, "\t%s", MbPrintNum(sst[mp->numM10BetaCats + mp->numM10GammaCats + j])); in PrintStates()