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Searched refs:omdp (Results 1 – 25 of 104) sorted by relevance

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/dports/biology/ncbi-toolkit/ncbi/api/
H A Dobjmgr.c238 if (omdp != NULL && omdp->parentptr == NULL && omdp->EntityID == entityID) { in ObjMgrFindByEntityID()
489 ObjMgrRecordOmdpByEntityID (omdp->EntityID, omdp); in ObjMgrAddEntityID()
1010 for (omdp = omp->ncbidata; omdp != NULL; omdp = omdp->next) in ObjMgrExtend()
1581 omdp->freeextra ((Pointer) omdp); in ObjMgrDelete()
1642 if (omdp != NULL && omdp->bulkIndexFree) { in ObjMgrDeleteAllInRecord()
1792 ObjMgrDelete(omdp->datatype, omdp->dataptr); in ObjMgrFreeClipBoardFunc()
2336 omdp = ObjMgrFindTop(omp, omdp); in ObjMgrGetEntityIDForPointer()
2928 (int)omdp->EntityID, (int)(omdp->datatype), in ObjMgrDump()
2930 (long)(omdp->parentptr), (long)(omdp->choice), (int)(omdp->lockcnt), in ObjMgrDump()
2964 for (omdp = omp->ncbiproc; omdp != NULL; omdp = omdp->next) in ObjMgrProcExtend()
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H A Dseqmgr.c802 omdp = sipp[num]->omdp; in BioseqFindFunc()
833 omdp = sipp[num]->omdp; in BioseqFindFunc()
868 omdp = ObjMgrFindTop(omp, omdp); in BioseqFindFunc()
3408 if (sipp[i]->omdp == omdp) in SeqMgrDeleteFromBioseqIndex()
3532 omdp = sipp [i]->omdp; in SeqMgrDeleteIndexesInRecord()
3726 bsp->omdp = (Pointer) omdp; in SeqMgrGetOmdpForBioseq()
4371 context->omdp = omdp; in SeqMgrGetBioseqContext()
5031 context->omdp = omdp; in SeqMgrGetDesiredDescriptor()
5086 context->omdp = omdp; in SeqMgrGetDesiredAnnotDesc()
5160 bspextra->omdp = omdp; in CreateBioseqExtraBlock()
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H A Dgather.c1245 if (omdp == NULL || omdp->datatype != OBJ_BIOSEQ) return NULL; in SeqMgrGetNextFeatureByID()
1247 context->omdp = (Pointer) omdp; in SeqMgrGetNextFeatureByID()
1251 omdp = (ObjMgrDataPtr) context->omdp; in SeqMgrGetNextFeatureByID()
1290 context->omdp = (Pointer) omdp; in SeqMgrGetNextFeatureByID()
3958 ObjMgrLock(omdp->datatype, omdp->dataptr, FALSE); in IGCCBuild()
3966 ip->omdp = omdp; in IGCCBuild()
4282 omdp = ObjMgrFindTop(omp, omdp); in FocusSeqEntry()
4334 omdp = igcc.omdp; /* could have been reloaded */ in GatherEntity()
4492 omdp = igcc.omdp; /* could have been reloaded */ in GatherItemFunc()
5337 ObjMgrDelete(omdp->datatype, omdp->dataptr); in AttachDataProc()
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H A Dfindrepl.c1945 ObjMgrDataPtr omdp; in StringActionInEntity() local
1951 omdp = ObjMgrGetData (entityID); in StringActionInEntity()
1952 if (omdp != NULL) { in StringActionInEntity()
1953 switch (omdp->datatype) { in StringActionInEntity()
2129 ObjMgrDataPtr omdp; in FindReplaceInEntity() local
2137 omdp = ObjMgrGetData (entityID); in FindReplaceInEntity()
2138 if (omdp != NULL) { in FindReplaceInEntity()
2139 switch (omdp->datatype) { in FindReplaceInEntity()
2272 ObjMgrDataPtr omdp; in FindStringsInEntity() local
2279 if (omdp != NULL) { in FindStringsInEntity()
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H A Dexplore.h80 Pointer omdp; member
95 Pointer omdp; member
108 Pointer omdp; member
136 Pointer omdp; member
147 Pointer omdp; member
H A Dedutil.c5143 omdp = (ObjMgrDataPtr) bsp->omdp; in SeqEdGetNextFeature()
5149 bsp->omdp = (Pointer) omdp; in SeqEdGetNextFeature()
5153 context->omdp = (Pointer) omdp; in SeqEdGetNextFeature()
5157 omdp = (ObjMgrDataPtr) context->omdp; in SeqEdGetNextFeature()
5205 context->omdp = (Pointer) omdp; in SeqEdGetNextFeature()
6844 omdp = (ObjMgrDataPtr) bsp->omdp; in SeqEdReindexAffectedFeatures()
6850 bsp->omdp = (Pointer) omdp; in SeqEdReindexAffectedFeatures()
6874 omdp = (ObjMgrDataPtr) bsp->omdp; in SeqEdReindexFeature()
6880 bsp->omdp = (Pointer) omdp; in SeqEdReindexFeature()
7195 omdp = (ObjMgrDataPtr) bsp->omdp; in SeqEdFixFeatureIndexForFeatureLocAdjust()
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H A Dseqmgr.h102 ObjMgrDataPtr omdp; /* the omdp containing the Bioseq */ member
305 NLM_EXTERN ObjMgrDataPtr LIBCALL BioseqReload PROTO((ObjMgrDataPtr omdp, Boolean lockit));
750 ObjMgrDataPtr omdp; member
985 NLM_EXTERN Pointer SeqMgrGetExtraDataForOmdp (ObjMgrDataPtr omdp);
H A Dlsqfetch.c372 OMUserDataPtr omdp; in FastaLibBioseqFetchFunc() local
389 omdp = ObjMgrGetUserData(ompcp->input_entityID, ompp->procid, OMPROC_FETCH, 0); in FastaLibBioseqFetchFunc()
390 if(omdp != NULL) in FastaLibBioseqFetchFunc()
391 seq_name = omdp->userdata.ptrvalue; in FastaLibBioseqFetchFunc()
425 omdp->userdata.ptrvalue = StringSave(seq_name); in FastaLibBioseqFetchFunc()
426 omdp->freefunc = FreeSeqName; in FastaLibBioseqFetchFunc()
691 OMUserDataPtr omdp; in FileBioseqFetchFunc() local
708 if(omdp != NULL) in FileBioseqFetchFunc()
709 file_name = omdp->userdata.ptrvalue; in FileBioseqFetchFunc()
768 omdp->userdata.ptrvalue = StringSave(file_name); in FileBioseqFetchFunc()
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H A Dobjmgr.h854 NLM_EXTERN Uint2 LIBCALL ObjMgrAddEntityID PROTO((ObjMgrPtr omp, ObjMgrDataPtr omdp));
864 NLM_EXTERN Boolean LIBCALL ObjMgrWholeEntity PROTO((ObjMgrDataPtr omdp, Uint4 itemID, Uint2 itemtyp…
1172 …ERN void LIBCALL ObjMgrAddIndexOnEntityID PROTO((ObjMgrPtr omp,Uint2 entityID,ObjMgrDataPtr omdp));
H A Dgather.h306 ObjMgrDataPtr omdp; /* top level omdp in entity */ member
H A Dasn2ff3.c3515 ObjMgrDataPtr omdp; in GetProtRefComment() local
3655 omdp = dcontext.omdp; in GetProtRefComment()
3656 if (omdp != NULL) { in GetProtRefComment()
3657 gc.parenttype = omdp->datatype; in GetProtRefComment()
3658 gc.parentitem = omdp->dataptr; in GetProtRefComment()
3674 omdp = ObjMgrGetData (ajp->entityID); in GetProtRefComment()
3675 if (omdp != NULL && omdp->datatype == OBJ_SEQSUB) { in GetProtRefComment()
3676 ssp = (SeqSubmitPtr) omdp->dataptr; in GetProtRefComment()
H A Dasn2gnb5.c3526 ObjMgrDataPtr omdp; in FormatReferenceBlock() local
3631 omdp = ObjMgrGetData (rbp->entityID); in FormatReferenceBlock()
3632 if (omdp != NULL && omdp->datatype == OBJ_SEQSUB) { in FormatReferenceBlock()
3633 ssp = (SeqSubmitPtr) omdp->dataptr; in FormatReferenceBlock()
H A Dsamutil.c178 ObjMgrData *omdp; in SAM_MakeViewerFree() local
185 omdp = ObjMgrFindByData(omp, data); in SAM_MakeViewerFree()
186 if(omdp == NULL) ThrowError; in SAM_MakeViewerFree()
188 entityID = omdp->EntityID; in SAM_MakeViewerFree()
H A Dvalid.c3460 ObjMgrDataPtr omdp; in ValidateFeatIDs() local
3465 if (omdp == NULL) return; in ValidateFeatIDs()
4800 ObjMgrDataPtr omdp; in ValidateSeqEntry() local
4862 if (omdp != NULL && omdp->datatype == OBJ_SEQSUB) { in ValidateSeqEntry()
5043 if (omdp == NULL || omdp->datatype != OBJ_SEQSUB) { in ValidateSeqEntry()
18193 if (omdp == NULL) { in MarkMrnasFromCDSXrefs()
18264 context.omdp = (Pointer) omdp; in MarkMrnasFromCDSXrefs()
20757 if (omdp != NULL && omdp->datatype == OBJ_SEQSUB) { in ValidateBioseqContextIndexed()
21670 ObjMgrDataPtr omdp; in ValidateBioseqContext() local
22094 omdp = NULL; in ValidateBioseqContext()
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H A Dtofasta.c4237 ObjMgrDataPtr omdp; in SimpleSegSeqTitle() local
4253 omdp = (ObjMgrDataPtr) bsp->omdp; in SimpleSegSeqTitle()
4254 if (omdp == NULL) return NULL; in SimpleSegSeqTitle()
4256 omdp = ObjMgrFindTop (omp, omdp); in SimpleSegSeqTitle()
4258 if (omdp == NULL) return NULL; in SimpleSegSeqTitle()
/dports/biology/ncbi-toolkit/ncbi/desktop/
H A Dvsm.c854 ObjMgrDataPtr omdp; in VSeqMgrPasteProc() local
862 if (omdp == NULL) in VSeqMgrPasteProc()
934 ObjMgrDataPtr omdp; in VSeqMgrMoveProc() local
942 if (omdp == NULL) in VSeqMgrMoveProc()
1773 omdp = *omdpp; in VSeqMgrPopulateMain()
1774 if ((omdp->parentptr == NULL) && (omdp->EntityID != 0)) in VSeqMgrPopulateMain()
1886 omdp = *omdpp; in VSMWinDelete()
2818 ObjMgrDataPtr omdp; in VSMAddPictureToEntity() local
2851 vnp = omdp->choice; in VSMAddPictureToEntity()
2852 ptr = omdp->dataptr; in VSMAddPictureToEntity()
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H A Dvsmfile.c1204 ObjMgrDataPtr omdp; in SaveSeqLocEntity() local
1212 omdp = ObjMgrGetDataStruct (ssp->omp, entityID); in SaveSeqLocEntity()
1213 if (omdp == NULL) return; in SaveSeqLocEntity()
1214 if (omdp->choicetype == OBJ_SEQENTRY || omdp->datatype != OBJ_SEQLOC) in SaveSeqLocEntity()
1226 (*(omtp->asnwrite))(omdp->dataptr, ssp->aip, NULL); in SaveSeqLocEntity()
H A Dseqsub.c2311 ObjMgrDataPtr omdp; in SubmitBlockGenFunc() local
2329 omdp = ObjMgrGetData (ompcp->input_entityID); in SubmitBlockGenFunc()
2330 if (omdp != NULL && omdp->datatype == OBJ_SEQSUB) { in SubmitBlockGenFunc()
2331 ssp = (SeqSubmitPtr) omdp->dataptr; in SubmitBlockGenFunc()
3250 ObjMgrDataPtr omdp; in SeqSubmitFromTemplateEditor() local
3320 omdp = ObjMgrGetData (entityID); in SeqSubmitFromTemplateEditor()
H A Dgphview.c57 extern SegmenT VSMEntityDraw PROTO((ObjMgrDataPtr omdp, VSMPictPtr vsmpp, VSeqMgrPtr vsmp));
1913 ObjMgrDataPtr omdp; in PopulateDesktop() local
1942 omdp = ObjMgrGetData (entityID); in PopulateDesktop()
1958 seg = VSMEntityDraw (omdp, vsmpp, vsmp); in PopulateDesktop()
/dports/biology/ncbi-toolkit/ncbi/network/id1arch/
H A Daccid1.c254 OMUserDataPtr omdp; in s_ID1BioseqFetchFunc() local
281 omdp = ObjMgrGetUserData(ompcp->input_entityID,ompp->procid, OMPROC_FETCH, 0); in s_ID1BioseqFetchFunc()
282 if (omdp != NULL) { in s_ID1BioseqFetchFunc()
283 gi = omdp->userdata.intvalue; in s_ID1BioseqFetchFunc()
317 omdp = ObjMgrAddUserData(ompcp->output_entityID, ompp->procid, OMPROC_FETCH, 0); in s_ID1BioseqFetchFunc()
318 omdp->userdata.intvalue = gi; in s_ID1BioseqFetchFunc()
/dports/biology/ncbi-toolkit/ncbi/access/
H A Dpmfapi.c2273 OMUserDataPtr omdp = NULL; in PubSeqBioseqFetchFunc() local
2321 if (omdp != NULL) { in PubSeqBioseqFetchFunc()
2322 uid = omdp->userdata.intvalue; in PubSeqBioseqFetchFunc()
2391 if (omdp != NULL) { in PubSeqBioseqFetchFunc()
2405 OMUserDataPtr omdp = NULL; in TraceBioseqFetchFunc() local
2421 if (omdp != NULL) { in TraceBioseqFetchFunc()
2446 if (omdp != NULL) { in TraceBioseqFetchFunc()
2468 OMUserDataPtr omdp = NULL; in SRABioseqFetchFunc() local
2483 if (omdp != NULL) { in SRABioseqFetchFunc()
2508 if (omdp != NULL) { in SRABioseqFetchFunc()
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/dports/biology/ncbi-toolkit/ncbi/cdromlib/
H A Daccentr.c3092 OMUserDataPtr omdp; local
3123 omdp = ObjMgrGetUserData(ompcp->input_entityID,ompp->procid, OMPROC_FETCH, 0);
3124 if (omdp != NULL)
3126 efudp = (EntrezFetchUserDataPtr)(omdp->userdata.ptrvalue);
3172 omdp = ObjMgrAddUserData(ompcp->output_entityID, ompp->procid, OMPROC_FETCH, 0);
3174 omdp->userdata.ptrvalue = efudp;
3177 omdp->freefunc = EntrezFetchFreeFunc;
/dports/biology/ncbi-toolkit/ncbi/sequin/
H A Dsequin4.c6897 ObjMgrDataPtr omdp; in OrfViewerMsgFunc() local
6908 if (omdp != NULL) { in OrfViewerMsgFunc()
7508 } else if (omdp->parentptr == NULL) { in ReportOnEntity()
7515 if (omdp->datatype < OBJ_MAX) { in ReportOnEntity()
7518 bsp = (BioseqPtr) omdp->dataptr; in ReportOnEntity()
7534 if (omdp->tempload < 3) { in ReportOnEntity()
7573 ObjMgrDataPtr omdp; in DesktopReportFunc() local
7599 omdp = *omdpp; in DesktopReportFunc()
7600 if (omdp->parentptr == NULL) { in DesktopReportFunc()
7605 omdp = *omdpp; in DesktopReportFunc()
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H A Dsequin1.c636 ObjMgrDataPtr omdp; in WriteTheEntityID() local
938 ObjMgrDataPtr omdp; in SubtoolModeTimerProc() local
987 ObjMgrDataPtr omdp; in BackupModeTimerProc() local
1088 ObjMgrDataPtr omdp; in ReturnSubmissionEmailAddress() local
1097 if (omdp != NULL && omdp->datatype == OBJ_SEQSUB) { in ReturnSubmissionEmailAddress()
1764 ObjMgrFree(omdp->datatype, omdp->dataptr); in SmartnetDoneFuncEx()
1874 ObjMgrFree(omdp->datatype, omdp->dataptr); in SmartnetDoneFuncEx()
5712 if (omdp != NULL && omdp->datatype == OBJ_SEQSUB) { in EnableEditSeqAlignAndSubItems()
8411 if (omdp != NULL && omdp->datatype != OBJ_SEQSUB) { in BioseqViewFormMenus()
10787 if (omdp != NULL && omdp->datatype == OBJ_BIOSEQ) { in ObjMgrReport()
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/dports/biology/ncbi-toolkit/ncbi/object/
H A Dobjseq.h438 Pointer omdp; /* internal objmgrdataptr to speed up indexed functions */ member

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