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Searched refs:opt_fmtd (Results 1 – 6 of 6) sorted by relevance

/dports/biology/infernal/infernal-1.1.3/easel/
H A Desl_msafile_phylip.c33 static int phylip_interleaved_Write(FILE *fp, const ESL_MSA *msa, ESL_MSAFILE_FMTDATA *opt_fmtd);
36 static int phylip_sequential_Write(FILE *fp, const ESL_MSA *msa, ESL_MSAFILE_FMTDATA *opt_fmtd);
326 esl_msafile_phylip_Write(FILE *fp, const ESL_MSA *msa, int format, ESL_MSAFILE_FMTDATA *opt_fmtd) in esl_msafile_phylip_Write() argument
328 if (format == eslMSAFILE_PHYLIP) return phylip_interleaved_Write(fp, msa, opt_fmtd); in esl_msafile_phylip_Write()
329 else if (format == eslMSAFILE_PHYLIPS) return phylip_sequential_Write (fp, msa, opt_fmtd); in esl_msafile_phylip_Write()
493 phylip_interleaved_Write(FILE *fp, const ESL_MSA *msa, ESL_MSAFILE_FMTDATA *opt_fmtd) in phylip_interleaved_Write() argument
495 int rpl = ( (opt_fmtd && opt_fmtd->rpl) ? opt_fmtd->rpl : 60); in phylip_interleaved_Write()
496 int namewidth = ( (opt_fmtd && opt_fmtd->namewidth) ? opt_fmtd->namewidth : 10); in phylip_interleaved_Write()
609 phylip_sequential_Write(FILE *fp, const ESL_MSA *msa, ESL_MSAFILE_FMTDATA *opt_fmtd) in phylip_sequential_Write() argument
611 int rpl = ( (opt_fmtd && opt_fmtd->rpl) ? opt_fmtd->rpl : 60); in phylip_sequential_Write()
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H A Desl_msafile_phylip.h13 …file_phylip_Write (FILE *fp, const ESL_MSA *msa, int format, ESL_MSAFILE_FMTDATA *opt_fmtd);
H A Desl_msafile.c543 esl_msafile_GuessFileFormat(ESL_BUFFER *bf, int *ret_fmtcode, ESL_MSAFILE_FMTDATA *opt_fmtd, char *… in esl_msafile_GuessFileFormat() argument
553 if (opt_fmtd) esl_msafile_fmtdata_Init(opt_fmtd); in esl_msafile_GuessFileFormat()
650 if (opt_fmtd) opt_fmtd->namewidth = namewidth; in esl_msafile_GuessFileFormat()
/dports/biology/hmmer/hmmer-3.3/easel/
H A Desl_msafile_phylip.c33 static int phylip_interleaved_Write(FILE *fp, const ESL_MSA *msa, ESL_MSAFILE_FMTDATA *opt_fmtd);
36 static int phylip_sequential_Write(FILE *fp, const ESL_MSA *msa, ESL_MSAFILE_FMTDATA *opt_fmtd);
326 esl_msafile_phylip_Write(FILE *fp, const ESL_MSA *msa, int format, ESL_MSAFILE_FMTDATA *opt_fmtd) in esl_msafile_phylip_Write() argument
328 if (format == eslMSAFILE_PHYLIP) return phylip_interleaved_Write(fp, msa, opt_fmtd); in esl_msafile_phylip_Write()
329 else if (format == eslMSAFILE_PHYLIPS) return phylip_sequential_Write (fp, msa, opt_fmtd); in esl_msafile_phylip_Write()
493 phylip_interleaved_Write(FILE *fp, const ESL_MSA *msa, ESL_MSAFILE_FMTDATA *opt_fmtd) in phylip_interleaved_Write() argument
495 int rpl = ( (opt_fmtd && opt_fmtd->rpl) ? opt_fmtd->rpl : 60); in phylip_interleaved_Write()
496 int namewidth = ( (opt_fmtd && opt_fmtd->namewidth) ? opt_fmtd->namewidth : 10); in phylip_interleaved_Write()
609 phylip_sequential_Write(FILE *fp, const ESL_MSA *msa, ESL_MSAFILE_FMTDATA *opt_fmtd) in phylip_sequential_Write() argument
611 int rpl = ( (opt_fmtd && opt_fmtd->rpl) ? opt_fmtd->rpl : 60); in phylip_sequential_Write()
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H A Desl_msafile_phylip.h13 …file_phylip_Write (FILE *fp, const ESL_MSA *msa, int format, ESL_MSAFILE_FMTDATA *opt_fmtd);
H A Desl_msafile.c543 esl_msafile_GuessFileFormat(ESL_BUFFER *bf, int *ret_fmtcode, ESL_MSAFILE_FMTDATA *opt_fmtd, char *… in esl_msafile_GuessFileFormat() argument
553 if (opt_fmtd) esl_msafile_fmtdata_Init(opt_fmtd); in esl_msafile_GuessFileFormat()
650 if (opt_fmtd) opt_fmtd->namewidth = namewidth; in esl_msafile_GuessFileFormat()