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Searched refs:p7P_DD (Results 1 – 25 of 26) sorted by relevance

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/dports/biology/infernal/infernal-1.1.3/hmmer/src/
H A Dgeneric_fwdback_rescaled.c218 + DMX(i,k-1) * TSC(p7P_DD,k-1); in p7_GForwardOdds()
234 + DMX(i,M-1) * TSC(p7P_DD,M-1); in p7_GForwardOdds()
364 p7P_TSC(gm, 1, p7P_DD) = 0.0f; in p7_profile_ConfigInOdds()
429 tp[p7P_DD] = hmm->t[k][p7H_DD]; in p7_profile_ConfigInOdds()
494 p7P_TSC(gm, 1, p7P_DD) = 0.0f; in p7_profile_ConfigInOdds_DDScaled()
529 tp[p7P_DD] = 1.0; in p7_profile_ConfigInOdds_DDScaled()
H A Dgeneric_viterbi.c111 DMX(i,k-1) + TSC(p7P_DD,k-1)); in p7_GViterbi()
126 DMX(i,M-1) + TSC(p7P_DD,M-1)); in p7_GViterbi()
255 DMX(i,k-1) + TSC(p7P_DD,k-1)); in p7_GViterbi_longtarget()
270 DMX(i,M-1) + TSC(p7P_DD,M-1)); in p7_GViterbi_longtarget()
H A Dgeneric_fwdback.c95 DMX(i,k-1) + TSC(p7P_DD,k-1)); in p7_GForward()
112 DMX(i,M-1) + TSC(p7P_DD,M-1)); in p7_GForward()
190 DMX(L, k+1) + TSC(p7P_DD,k)); in p7_GBackward()
228 p7_FLogsum( DMX(i, k+1) + TSC(p7P_DD,k), in p7_GBackward()
H A Dgeneric_optacc.c109 TSCDELTA(p7P_DD, k-1) * DMX(i,k-1)); in p7_GOptimalAccuracy()
119 TSCDELTA(p7P_DD, M-1) * DMX(i,M-1)); in p7_GOptimalAccuracy()
279 path[1] = TSCDELTA(p7P_DD, k-1) * DMX(i, k-1); in select_d()
H A Dp7_profile.c87 p7P_TSC(gm, 1, p7P_DD) = -eslINFINITY; in p7_profile_Create()
435 case p7T_D: tsc = p7P_TSC(gm, k1, p7P_DD); break; in p7_profile_GetT()
H A Dgeneric_fwdback_chk.c75 dc + *(tsc+p7P_DD)); /* D(i,k) * t_D(k)->D(k+1) */ in forward_row()
213 DMR(dpc,k) = p7_FLogsum( p7_FLogsum( DMR(dpc, k+1) + TSC(p7P_DD,k), in backward_row()
272 DMR(bck, k+1) + TSC(p7P_DD, k)); in p7_GBackwardCheckpointed()
H A Dgeneric_fwdback_banded.c94 dc = p7_FLogsum( sc + TSC(p7P_MD, k), dc + TSC(p7P_DD, k)); in p7_GForwardBanded()
H A Dgeneric_vtrace.c115 else if (esl_FCompare(DMX(i,k), DMX(i, k-1) + TSC(p7P_DD, k-1), tol) == eslOK) scur = p7T_D; in p7_GTrace()
H A Dgeneric_stotrace.c125 sc[1] = DMX(i, k-1) + TSC(p7P_DD, k-1); in p7_GStochasticTrace()
H A Dmodelconfig.c134 tp[p7P_DD] = log(hmm->t[k][p7H_DD]); in p7_ProfileConfig()
H A Dhmmer.h227 p7P_DD = 5, enumerator
/dports/biology/hmmer/hmmer-3.3/src/
H A Dgeneric_fwdback_rescaled.c218 + DMX(i,k-1) * TSC(p7P_DD,k-1); in p7_GForwardOdds()
234 + DMX(i,M-1) * TSC(p7P_DD,M-1); in p7_GForwardOdds()
364 p7P_TSC(gm, 1, p7P_DD) = 0.0f; in p7_profile_ConfigInOdds()
429 tp[p7P_DD] = hmm->t[k][p7H_DD]; in p7_profile_ConfigInOdds()
494 p7P_TSC(gm, 1, p7P_DD) = 0.0f; in p7_profile_ConfigInOdds_DDScaled()
529 tp[p7P_DD] = 1.0; in p7_profile_ConfigInOdds_DDScaled()
H A Dgeneric_viterbi.c111 DMX(i,k-1) + TSC(p7P_DD,k-1)); in p7_GViterbi()
126 DMX(i,M-1) + TSC(p7P_DD,M-1)); in p7_GViterbi()
255 DMX(i,k-1) + TSC(p7P_DD,k-1)); in p7_GViterbi_longtarget()
270 DMX(i,M-1) + TSC(p7P_DD,M-1)); in p7_GViterbi_longtarget()
H A Dgeneric_fwdback.c95 DMX(i,k-1) + TSC(p7P_DD,k-1)); in p7_GForward()
112 DMX(i,M-1) + TSC(p7P_DD,M-1)); in p7_GForward()
190 DMX(L, k+1) + TSC(p7P_DD,k)); in p7_GBackward()
228 p7_FLogsum( DMX(i, k+1) + TSC(p7P_DD,k), in p7_GBackward()
H A Dgeneric_optacc.c109 TSCDELTA(p7P_DD, k-1) * DMX(i,k-1)); in p7_GOptimalAccuracy()
119 TSCDELTA(p7P_DD, M-1) * DMX(i,M-1)); in p7_GOptimalAccuracy()
279 path[1] = TSCDELTA(p7P_DD, k-1) * DMX(i, k-1); in select_d()
H A Dp7_profile.c87 p7P_TSC(gm, 1, p7P_DD) = -eslINFINITY; in p7_profile_Create()
435 case p7T_D: tsc = p7P_TSC(gm, k1, p7P_DD); break; in p7_profile_GetT()
H A Dgeneric_fwdback_chk.c75 dc + *(tsc+p7P_DD)); /* D(i,k) * t_D(k)->D(k+1) */ in forward_row()
213 DMR(dpc,k) = p7_FLogsum( p7_FLogsum( DMR(dpc, k+1) + TSC(p7P_DD,k), in backward_row()
272 DMR(bck, k+1) + TSC(p7P_DD, k)); in p7_GBackwardCheckpointed()
H A Dgeneric_fwdback_banded.c94 dc = p7_FLogsum( sc + TSC(p7P_MD, k), dc + TSC(p7P_DD, k)); in p7_GForwardBanded()
H A Dgeneric_vtrace.c115 else if (esl_FCompare(DMX(i,k), DMX(i, k-1) + TSC(p7P_DD, k-1), tol) == eslOK) scur = p7T_D; in p7_GTrace()
H A Dgeneric_stotrace.c125 sc[1] = DMX(i, k-1) + TSC(p7P_DD, k-1); in p7_GStochasticTrace()
H A Dmodelconfig.c134 tp[p7P_DD] = log(hmm->t[k][p7H_DD]); in p7_ProfileConfig()
/dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_sse/
H A Dp7_oprofile.c886 …for (z = 0; z < 8; z++) tmp.i[z] = ((k+ z*nq < M) ? wordify(om, p7P_TSC(gm, k+ z*nq, p7P_DD)) : -3… in vf_conversion()
914 ddtmp = (int) wordify(om, p7P_TSC(gm, k, p7P_DD)); in vf_conversion()
977 for (z = 0; z < 4; z++) tmp.x[z] = (k+z*nq < M) ? p7P_TSC(gm, k+z*nq, p7P_DD) : -eslINFINITY; in fb_conversion()
/dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_vmx/
H A Dp7_oprofile.c807 …for (z = 0; z < 8; z++) tmp.i[z] = ((k+ z*nq < M) ? wordify(om, p7P_TSC(gm, k+ z*nq, p7P_DD)) : -3… in vf_conversion()
835 ddtmp = (int) wordify(om, p7P_TSC(gm, k, p7P_DD)); in vf_conversion()
899 for (z = 0; z < 4; z++) tmp.x[z] = (k+z*nq < M) ? p7P_TSC(gm, k+z*nq, p7P_DD) : -eslINFINITY; in fb_conversion()
/dports/biology/hmmer/hmmer-3.3/src/impl_sse/
H A Dp7_oprofile.c886 …for (z = 0; z < 8; z++) tmp.i[z] = ((k+ z*nq < M) ? wordify(om, p7P_TSC(gm, k+ z*nq, p7P_DD)) : -3… in vf_conversion()
914 ddtmp = (int) wordify(om, p7P_TSC(gm, k, p7P_DD)); in vf_conversion()
977 for (z = 0; z < 4; z++) tmp.x[z] = (k+z*nq < M) ? p7P_TSC(gm, k+z*nq, p7P_DD) : -eslINFINITY; in fb_conversion()
/dports/biology/hmmer/hmmer-3.3/src/impl_vmx/
H A Dp7_oprofile.c807 …for (z = 0; z < 8; z++) tmp.i[z] = ((k+ z*nq < M) ? wordify(om, p7P_TSC(gm, k+ z*nq, p7P_DD)) : -3… in vf_conversion()
835 ddtmp = (int) wordify(om, p7P_TSC(gm, k, p7P_DD)); in vf_conversion()
899 for (z = 0; z < 4; z++) tmp.x[z] = (k+z*nq < M) ? p7P_TSC(gm, k+z*nq, p7P_DD) : -eslINFINITY; in fb_conversion()

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