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Searched refs:p7T_X (Results 1 – 10 of 10) sorted by relevance

/dports/biology/infernal/infernal-1.1.3/hmmer/src/
H A Dp7_trace.c558 prv = (tr->st[z-1] == p7T_X)? tr->st[z-2] : tr->st[z-1]; in p7_trace_Validate()
565 case p7T_X: in p7_trace_Validate()
1023 case p7T_X: in p7_trace_Append()
1074 case p7T_X: in p7_trace_AppendWithPP()
1308 if (tr[idx]->st[tr[idx]->N-1] != p7T_X) in p7_trace_FauxFromMSA()
1321 if (tr[idx]->st[tr[idx]->N-1] != p7T_X) in p7_trace_FauxFromMSA()
1322 status = p7_trace_Append(tr[idx], p7T_X, k, 0); in p7_trace_FauxFromMSA()
1484 if (tr->st[0] == p7T_B && tr->st[1] == p7T_X) in p7_trace_Count()
1487 if (tr->st[tr->N-1] == p7T_E && tr->st[tr->N-2] == p7T_X) in p7_trace_Count()
1493 if (tr->st[z] == p7T_X) continue; /* skip missing data */ in p7_trace_Count()
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H A Dp7_profile.c395 if (st1 == p7T_X || st2 == p7T_X) return eslOK; in p7_profile_GetT()
H A Dp7_hmm.c350 else if (strcasecmp(typestring, "X") == 0) return p7T_X; in p7_hmm_EncodeStatetype()
378 case p7T_X: return "X"; in p7_hmm_DecodeStatetype()
H A Dtracealign.c654 case p7T_X: in make_digital_msa()
757 case p7T_X: in make_text_msa()
H A Dhmmer.h369 p7T_X = 11, /* missing data: used esp. for local entry/exits */ enumerator
/dports/biology/hmmer/hmmer-3.3/src/
H A Dp7_trace.c558 prv = (tr->st[z-1] == p7T_X)? tr->st[z-2] : tr->st[z-1]; in p7_trace_Validate()
565 case p7T_X: in p7_trace_Validate()
1023 case p7T_X: in p7_trace_Append()
1074 case p7T_X: in p7_trace_AppendWithPP()
1308 if (tr[idx]->st[tr[idx]->N-1] != p7T_X) in p7_trace_FauxFromMSA()
1321 if (tr[idx]->st[tr[idx]->N-1] != p7T_X) in p7_trace_FauxFromMSA()
1322 status = p7_trace_Append(tr[idx], p7T_X, k, 0); in p7_trace_FauxFromMSA()
1484 if (tr->st[0] == p7T_B && tr->st[1] == p7T_X) in p7_trace_Count()
1487 if (tr->st[tr->N-1] == p7T_E && tr->st[tr->N-2] == p7T_X) in p7_trace_Count()
1493 if (tr->st[z] == p7T_X) continue; /* skip missing data */ in p7_trace_Count()
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H A Dp7_profile.c395 if (st1 == p7T_X || st2 == p7T_X) return eslOK; in p7_profile_GetT()
H A Dp7_hmm.c350 else if (strcasecmp(typestring, "X") == 0) return p7T_X; in p7_hmm_EncodeStatetype()
378 case p7T_X: return "X"; in p7_hmm_DecodeStatetype()
H A Dtracealign.c654 case p7T_X: in make_digital_msa()
757 case p7T_X: in make_text_msa()
H A Dhmmer.h369 p7T_X = 11, /* missing data: used esp. for local entry/exits */ enumerator