Searched refs:p7T_X (Results 1 – 10 of 10) sorted by relevance
/dports/biology/infernal/infernal-1.1.3/hmmer/src/ |
H A D | p7_trace.c | 558 prv = (tr->st[z-1] == p7T_X)? tr->st[z-2] : tr->st[z-1]; in p7_trace_Validate() 565 case p7T_X: in p7_trace_Validate() 1023 case p7T_X: in p7_trace_Append() 1074 case p7T_X: in p7_trace_AppendWithPP() 1308 if (tr[idx]->st[tr[idx]->N-1] != p7T_X) in p7_trace_FauxFromMSA() 1321 if (tr[idx]->st[tr[idx]->N-1] != p7T_X) in p7_trace_FauxFromMSA() 1322 status = p7_trace_Append(tr[idx], p7T_X, k, 0); in p7_trace_FauxFromMSA() 1484 if (tr->st[0] == p7T_B && tr->st[1] == p7T_X) in p7_trace_Count() 1487 if (tr->st[tr->N-1] == p7T_E && tr->st[tr->N-2] == p7T_X) in p7_trace_Count() 1493 if (tr->st[z] == p7T_X) continue; /* skip missing data */ in p7_trace_Count() [all …]
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H A D | p7_profile.c | 395 if (st1 == p7T_X || st2 == p7T_X) return eslOK; in p7_profile_GetT()
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H A D | p7_hmm.c | 350 else if (strcasecmp(typestring, "X") == 0) return p7T_X; in p7_hmm_EncodeStatetype() 378 case p7T_X: return "X"; in p7_hmm_DecodeStatetype()
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H A D | tracealign.c | 654 case p7T_X: in make_digital_msa() 757 case p7T_X: in make_text_msa()
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H A D | hmmer.h | 369 p7T_X = 11, /* missing data: used esp. for local entry/exits */ enumerator
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/dports/biology/hmmer/hmmer-3.3/src/ |
H A D | p7_trace.c | 558 prv = (tr->st[z-1] == p7T_X)? tr->st[z-2] : tr->st[z-1]; in p7_trace_Validate() 565 case p7T_X: in p7_trace_Validate() 1023 case p7T_X: in p7_trace_Append() 1074 case p7T_X: in p7_trace_AppendWithPP() 1308 if (tr[idx]->st[tr[idx]->N-1] != p7T_X) in p7_trace_FauxFromMSA() 1321 if (tr[idx]->st[tr[idx]->N-1] != p7T_X) in p7_trace_FauxFromMSA() 1322 status = p7_trace_Append(tr[idx], p7T_X, k, 0); in p7_trace_FauxFromMSA() 1484 if (tr->st[0] == p7T_B && tr->st[1] == p7T_X) in p7_trace_Count() 1487 if (tr->st[tr->N-1] == p7T_E && tr->st[tr->N-2] == p7T_X) in p7_trace_Count() 1493 if (tr->st[z] == p7T_X) continue; /* skip missing data */ in p7_trace_Count() [all …]
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H A D | p7_profile.c | 395 if (st1 == p7T_X || st2 == p7T_X) return eslOK; in p7_profile_GetT()
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H A D | p7_hmm.c | 350 else if (strcasecmp(typestring, "X") == 0) return p7T_X; in p7_hmm_EncodeStatetype() 378 case p7T_X: return "X"; in p7_hmm_DecodeStatetype()
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H A D | tracealign.c | 654 case p7T_X: in make_digital_msa() 757 case p7T_X: in make_text_msa()
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H A D | hmmer.h | 369 p7T_X = 11, /* missing data: used esp. for local entry/exits */ enumerator
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