| /dports/biology/infernal/infernal-1.1.3/hmmer/src/ |
| H A D | generic_fwdback_banded.c | 180 p7_ProfileConfig(hmm, bg, gm, L, p7_GLOCAL); in main()
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| H A D | hmmemit.c | 237 else if (esl_opt_GetBoolean(go, "--glocal")) mode = p7_GLOCAL; in emit_sequences()
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| H A D | generic_fwdback_rescaled.c | 94 …_GetBoolean(go, "--ls")) status = p7_profile_ConfigInOdds (hmm, bg, gm, sq->n, p7_GLOCAL); in main()
103 …e if (esl_opt_GetBoolean(go, "--ls")) status = p7_ProfileConfig(hmm, bg, gmref, sq->n, p7_GLOCAL); in main()
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| H A D | generic_decoding.c | 419 else if (esl_opt_GetBoolean(go, "--ls")) p7_ProfileConfig(hmm, bg, gm, sq->n, p7_GLOCAL); in main()
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| H A D | p7_profile.c | 349 if (gm->mode == p7_LOCAL || gm->mode == p7_GLOCAL) return TRUE; in p7_profile_IsMultihit()
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| H A D | hmmer.h | 61 #define p7_GLOCAL 2 /* multihit glocal: "ls" mode */ macro
66 #define p7_IsMulti(mode) (mode == p7_LOCAL || mode == p7_GLOCAL)
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| H A D | generic_fwdback.c | 767 else if (esl_opt_GetBoolean(go, "--ls")) p7_ProfileConfig(hmm, bg, gm, sq->n, p7_GLOCAL); in main()
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| H A D | hmmsim.c | 664 else if (esl_opt_GetBoolean(go, "--ls")) p7_ProfileConfig(hmm, cfg->bg, gm, L, p7_GLOCAL); in process_workunit()
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| /dports/biology/hmmer/hmmer-3.3/src/ |
| H A D | generic_fwdback_banded.c | 180 p7_ProfileConfig(hmm, bg, gm, L, p7_GLOCAL); in main()
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| H A D | hmmemit.c | 237 else if (esl_opt_GetBoolean(go, "--glocal")) mode = p7_GLOCAL; in emit_sequences()
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| H A D | generic_fwdback_rescaled.c | 94 …_GetBoolean(go, "--ls")) status = p7_profile_ConfigInOdds (hmm, bg, gm, sq->n, p7_GLOCAL); in main()
103 …e if (esl_opt_GetBoolean(go, "--ls")) status = p7_ProfileConfig(hmm, bg, gmref, sq->n, p7_GLOCAL); in main()
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| H A D | generic_decoding.c | 419 else if (esl_opt_GetBoolean(go, "--ls")) p7_ProfileConfig(hmm, bg, gm, sq->n, p7_GLOCAL); in main()
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| H A D | p7_profile.c | 349 if (gm->mode == p7_LOCAL || gm->mode == p7_GLOCAL) return TRUE; in p7_profile_IsMultihit()
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| H A D | hmmer.h | 61 #define p7_GLOCAL 2 /* multihit glocal: "ls" mode */ macro
66 #define p7_IsMulti(mode) (mode == p7_LOCAL || mode == p7_GLOCAL)
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| H A D | generic_fwdback.c | 767 else if (esl_opt_GetBoolean(go, "--ls")) p7_ProfileConfig(hmm, bg, gm, sq->n, p7_GLOCAL); in main()
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| H A D | hmmsim.c | 664 else if (esl_opt_GetBoolean(go, "--ls")) p7_ProfileConfig(hmm, cfg->bg, gm, L, p7_GLOCAL); in process_workunit()
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| /dports/biology/infernal/infernal-1.1.3/src/ |
| H A D | cm_p7_modelmaker.c | 295 if ((status = p7_ProfileConfig(hmm, bg, gm, EgfL, p7_GLOCAL)) != eslOK) goto ERROR; in cm_p7_Calibrate()
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| H A D | cmsearch.c | 2456 p7_ProfileConfig(info->cm->fp7, info->bg, info->gm, 100, p7_GLOCAL); in setup_hmm_filter()
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| H A D | cm_pipeline.c | 2982 p7_ProfileConfig(*opt_hmm, bg, *opt_gm, 100, p7_GLOCAL); in pli_p7_env_def()
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| /dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_sse/ |
| H A D | fwdback.c | 1107 else if (esl_opt_GetBoolean(go, "--ls")) p7_ProfileConfig(hmm, bg, gm, sq->n, p7_GLOCAL); in main()
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| /dports/biology/hmmer/hmmer-3.3/src/impl_sse/ |
| H A D | fwdback.c | 1107 else if (esl_opt_GetBoolean(go, "--ls")) p7_ProfileConfig(hmm, bg, gm, sq->n, p7_GLOCAL); in main()
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