Home
last modified time | relevance | path

Searched refs:pamh1 (Results 1 – 14 of 14) sorted by relevance

/dports/biology/fasta3/fasta-36.3.8/src/
H A Dupam.h718 int pamh1[MAXSQ+1]; /* used for kfact replacement */ variable
866 extern int pamh1[MAXSQ+1];
H A Ddropnfa.h47 int *pamh1; /* pam based array */ member
H A Dtatstats.h76 int *pamh1; /* pam based array */ member
H A Ddropfs2.c196 if ((f_str->pamh1 = (int *) calloc (ppst->nsq+1, sizeof (int))) == NULL) { in init_work()
457 f_str->pamh1[i0] = ppst->pam2[0][i0][i0]; in init_work()
549 free(f_str->pamh1); in close_work()
658 if (dptr->score + f_str->pamh1[aa0[tpos]] == f_str->aa0s[tpos]) { in do_fasts()
665 else if (dptr->score + f_str->pamh1[aa0[tpos]] > f_str->aa0s[tpos]) { in do_fasts()
714 dptr->score += f_str->pamh1[aa0[tpos]]; in do_fasts()
H A Ddropff2.c167 if ((f_str->pamh1 = (int *) calloc (nsq+1, sizeof (int))) == NULL) { in init_work()
274 f_str->pamh1[i0] = ppst->pam2[0][i0][i0]; in init_work()
381 free(f_str->pamh1); in close_work()
484 dptr->score += f_str->pamh1[aa0[tpos]]; in do_fastf()
H A Ddropnfa.c230 if ((f_str->pamh1 = (int *) calloc (nsq+1, sizeof (int))) == NULL) { in init_work()
291 f_str->pamh1[i0] = ppst->pam2[ip][i0][i0] * ktup; in init_work()
296 f_str->pamh1[i0] = fact; in init_work()
523 free(f_str->pamh1); in close_work()
724 dptr->score += f_str->pamh1[aa0[tpos]]; in do_fasta()
H A Ddropfx2.c144 int *pamh1; /* pam based array */ member
302 if ((f_str->pamh1 = (int *) calloc (ppst->nsq+1, sizeof (int))) == NULL) { in init_work()
428 f_str->pamh1[i0] = ppst->pam2[ip][i0][i0] * ktup; in init_work()
431 f_str->pamh1[i0] = fact; in init_work()
592 free(f_str->pamh1); in close_work()
791 dptr->score += f_str->pamh1[aa0[tpos]];
H A Ddropfz3.c136 int *pamh1; /* pam based array */ member
544 if ((f_str->pamh1 = (int *) calloc (ppst->nsq+1, sizeof (int))) == NULL) { in init_work()
605 f_str->pamh1[i0] = ppst->pam2[ip][i0][i0] * ktup; in init_work()
608 f_str->pamh1[i0] = fact; in init_work()
777 free(f_str->pamh1); in close_work()
948 dptr->score += f_str->pamh1[aa0[tpos]];
H A Ddropfx.c142 int *pamh1; /* pam based array */ member
300 if ((f_str->pamh1 = (int *) calloc (ppst->nsq+1, sizeof (int))) == NULL) { in init_work()
426 f_str->pamh1[i0] = ppst->pam2[ip][i0][i0] * ktup; in init_work()
429 f_str->pamh1[i0] = fact; in init_work()
590 free(f_str->pamh1); in close_work()
789 dptr->score += f_str->pamh1[aa0[tpos]];
H A Ddropfz2.c136 int *pamh1; /* pam based array */ member
544 if ((f_str->pamh1 = (int *) calloc (ppst->nsq+1, sizeof (int))) == NULL) { in init_work()
605 f_str->pamh1[i0] = ppst->pam2[ip][i0][i0] * ktup; in init_work()
608 f_str->pamh1[i0] = fact; in init_work()
777 free(f_str->pamh1); in close_work()
948 dptr->score += f_str->pamh1[aa0[tpos]];
/dports/biology/fasta/fasta/
H A Dupam.gbl300 int pamh1[MAXSQ]; /* used for kfact replacement */
330 extern int pamh1[];
H A Dprdf.c590 for (i0=0; i0<nsq; i0++) pamh1[i0]=pam2[i0][i0]*ktup;
592 for (i0=0; i0<nsq; i0++) pamh1[i0]=fact;
725 dptr->score += pamh1[aa0[tpos]];
H A Dfffasta.c1345 for (i0=0; i0<nsq; i0++) pamh1[i0]=pam2[i0][i0]*ktup;
1347 for (i0=0; i0<nsq; i0++) pamh1[i0]=fact;
1613 dptr->score += pamh1[aa0[tpos]];
/dports/biology/emboss/EMBOSS-6.6.0/emboss/
H A Dgarnier.c342 ajint pamh1[MAXSQ]; /* used for kfact replacement */ variable