Searched refs:pamh1 (Results 1 – 14 of 14) sorted by relevance
718 int pamh1[MAXSQ+1]; /* used for kfact replacement */ variable866 extern int pamh1[MAXSQ+1];
47 int *pamh1; /* pam based array */ member
76 int *pamh1; /* pam based array */ member
196 if ((f_str->pamh1 = (int *) calloc (ppst->nsq+1, sizeof (int))) == NULL) { in init_work()457 f_str->pamh1[i0] = ppst->pam2[0][i0][i0]; in init_work()549 free(f_str->pamh1); in close_work()658 if (dptr->score + f_str->pamh1[aa0[tpos]] == f_str->aa0s[tpos]) { in do_fasts()665 else if (dptr->score + f_str->pamh1[aa0[tpos]] > f_str->aa0s[tpos]) { in do_fasts()714 dptr->score += f_str->pamh1[aa0[tpos]]; in do_fasts()
167 if ((f_str->pamh1 = (int *) calloc (nsq+1, sizeof (int))) == NULL) { in init_work()274 f_str->pamh1[i0] = ppst->pam2[0][i0][i0]; in init_work()381 free(f_str->pamh1); in close_work()484 dptr->score += f_str->pamh1[aa0[tpos]]; in do_fastf()
230 if ((f_str->pamh1 = (int *) calloc (nsq+1, sizeof (int))) == NULL) { in init_work()291 f_str->pamh1[i0] = ppst->pam2[ip][i0][i0] * ktup; in init_work()296 f_str->pamh1[i0] = fact; in init_work()523 free(f_str->pamh1); in close_work()724 dptr->score += f_str->pamh1[aa0[tpos]]; in do_fasta()
144 int *pamh1; /* pam based array */ member302 if ((f_str->pamh1 = (int *) calloc (ppst->nsq+1, sizeof (int))) == NULL) { in init_work()428 f_str->pamh1[i0] = ppst->pam2[ip][i0][i0] * ktup; in init_work()431 f_str->pamh1[i0] = fact; in init_work()592 free(f_str->pamh1); in close_work()791 dptr->score += f_str->pamh1[aa0[tpos]];
136 int *pamh1; /* pam based array */ member544 if ((f_str->pamh1 = (int *) calloc (ppst->nsq+1, sizeof (int))) == NULL) { in init_work()605 f_str->pamh1[i0] = ppst->pam2[ip][i0][i0] * ktup; in init_work()608 f_str->pamh1[i0] = fact; in init_work()777 free(f_str->pamh1); in close_work()948 dptr->score += f_str->pamh1[aa0[tpos]];
142 int *pamh1; /* pam based array */ member300 if ((f_str->pamh1 = (int *) calloc (ppst->nsq+1, sizeof (int))) == NULL) { in init_work()426 f_str->pamh1[i0] = ppst->pam2[ip][i0][i0] * ktup; in init_work()429 f_str->pamh1[i0] = fact; in init_work()590 free(f_str->pamh1); in close_work()789 dptr->score += f_str->pamh1[aa0[tpos]];
300 int pamh1[MAXSQ]; /* used for kfact replacement */330 extern int pamh1[];
590 for (i0=0; i0<nsq; i0++) pamh1[i0]=pam2[i0][i0]*ktup;592 for (i0=0; i0<nsq; i0++) pamh1[i0]=fact;725 dptr->score += pamh1[aa0[tpos]];
1345 for (i0=0; i0<nsq; i0++) pamh1[i0]=pam2[i0][i0]*ktup;1347 for (i0=0; i0<nsq; i0++) pamh1[i0]=fact;1613 dptr->score += pamh1[aa0[tpos]];
342 ajint pamh1[MAXSQ]; /* used for kfact replacement */ variable